Guide to the Human Genome
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Name: ACTC1 Sequence: fasta or formatted (377aa) NCBI GI: 4885049
Description:

cardiac muscle alpha actin 1 proprotein

Referenced in:

Actin and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         29           2
 C cysteine            1.6          6           1
 D aspartate           5.8         22           2
 E glutamate           7.4         28           2
 F phenylalanine       3.2         12           1
 G glycine             7.4         28           2
 H histidine           2.4          9           2
 I isoleucine          8.0         30           2
 K lysine              5.0         19           1
 L leucine             7.2         27           2
 M methionine          4.2         16           1
 N asparagine          3.2         12           2
 P proline             5.0         19           2
 Q glutamine           2.9         11           2
 R arginine            4.8         18           1
 S serine              6.4         24           4
 T threonine           6.9         26           2
 V valine              5.6         21           1
 W tryptophan          1.1          4           1
 Y tyrosine            4.2         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   cardiac muscle alpha actin 1 proprotein 
ACTA1                 0.993   actin, alpha 1, skeletal muscle 
ACTA2                 0.988   alpha 2 actin 
ACTA2                 0.988   alpha 2 actin 
ACTG2                 0.981   actin, gamma 2 propeptide 
ACTG1                 0.945   actin, gamma 1 propeptide 
ACTB                  0.943   beta actin 
ACTBL2                0.899   actin, beta-like 2 
POTEE                 0.874   protein expressed in prostate, ovary, testis, and p...
ACTBL3                0.873   PREDICTED: actin, beta-like 3 
ACTBL3                0.873   PREDICTED: kappa-actin 
LOC653269             0.869   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.869   PREDICTED: similar to protein expressed in prostate,...
ACTBL3                0.869   PREDICTED: actin, beta-like 3 
POTEF                 0.866   prostate, ovary, testis expressed protein on chromo...
LOC653781             0.861   PREDICTED: similar to protein expressed in prostate...
ACTR1B                0.551   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.541   ARP1 actin-related protein 1 homolog A, centractin al...
ARPM1                 0.493   actin related protein M1 
LOC100128069          0.478   PREDICTED: similar to alpha actin 
LOC100128069          0.463   PREDICTED: similar to Actin, alpha 1, skeletal musc...
ACTRT1                0.460   actin-related protein T1 
ACTRT2                0.457   actin-related protein M2 
ACTR2                 0.455   actin-related protein 2 isoform b 
ACTR2                 0.449   actin-related protein 2 isoform a 
ACTL7A                0.402   actin-like 7A 
ACTL7B                0.388   actin-like 7B 
ACTL9                 0.369   actin-like 9 
ACTL6B                0.310   actin-like 6B 
ACTL6A                0.304   actin-like 6A isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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