Guide to the Human Genome
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Name: ACTR3 Sequence: fasta or formatted (418aa) NCBI GI: 5031573
Description:

ARP3 actin-related protein 3 homolog

Referenced in:

Actin and Related Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         24           2
 C cysteine            1.9          8           1
 D aspartate           6.0         25           2
 E glutamate           7.7         32           2
 F phenylalanine       5.0         21           2
 G glycine             7.4         31           2
 H histidine           2.2          9           2
 I isoleucine          7.9         33           2
 K lysine              5.5         23           2
 L leucine             6.2         26           2
 M methionine          2.2          9           1
 N asparagine          2.4         10           1
 P proline             6.2         26           2
 Q glutamine           3.8         16           2
 R arginine            6.0         25           2
 S serine              5.0         21           1
 T threonine           5.5         23           1
 V valine              7.9         33           2
 W tryptophan          1.2          5           1
 Y tyrosine            4.3         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ARP3 actin-related protein 3 homolog 
ACTR3B                0.929   actin-related protein 3-beta isoform 1 
ACTR3B                0.694   actin-related protein 3-beta isoform 2 
ARP11                 0.388   PREDICTED: actin-related Arp11 
ARP11                 0.388   PREDICTED: actin-related Arp11 
ARP11                 0.387   PREDICTED: actin-related Arp11 
ACTG1                 0.268   actin, gamma 1 propeptide 
ACTB                  0.268   beta actin 
ACTA1                 0.267   actin, alpha 1, skeletal muscle 
ACTC1                 0.265   cardiac muscle alpha actin 1 proprotein 
ACTBL2                0.265   actin, beta-like 2 
ACTA2                 0.264   alpha 2 actin 
ACTA2                 0.264   alpha 2 actin 
ACTG2                 0.263   actin, gamma 2 propeptide 
ACTR1B                0.253   ARP1 actin-related protein 1 homolog B, centractin b...
ACTR1A                0.252   ARP1 actin-related protein 1 homolog A, centractin al...
ACTBL3                0.238   PREDICTED: actin, beta-like 3 
ACTBL3                0.238   PREDICTED: kappa-actin 
LOC653269             0.238   PREDICTED: similar to protein expressed in prostate...
LOC653269             0.238   PREDICTED: similar to protein expressed in prostate,...
POTEE                 0.236   protein expressed in prostate, ovary, testis, and p...
ACTBL3                0.234   PREDICTED: actin, beta-like 3 
POTEF                 0.234   prostate, ovary, testis expressed protein on chromo...
LOC653781             0.233   PREDICTED: similar to protein expressed in prostate...
ACTR2                 0.215   actin-related protein 2 isoform a 
ACTR2                 0.214   actin-related protein 2 isoform b 
LOC100290215          0.211   PREDICTED: hypothetical protein XP_002346994 
ACTL9                 0.188   actin-like 9 
ACTRT2                0.180   actin-related protein M2 
LOC100128069          0.176   PREDICTED: similar to alpha actin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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