Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239747216
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747216 PREDICTED: hypothetical protein XP_002346941 [Homo
sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747216 PREDICTED: hypothetical protein XP_002346941 [Homo ... 509 e-144
gi|239741024 PREDICTED: hypothetical protein XP_002342070 [Homo ... 509 e-144
gi|239752679 PREDICTED: hypothetical protein [Homo sapiens] 497 e-141
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 47 2e-05
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 47 2e-05
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 47 2e-05
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 47 2e-05
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 46 3e-05
gi|48762934 alpha 2 type I collagen [Homo sapiens] 44 1e-04
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 44 1e-04
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 44 2e-04
gi|18105032 type X collagen alpha 1 precursor [Homo sapiens] 43 2e-04
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 43 3e-04
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 43 3e-04
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 43 3e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 42 5e-04
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 42 5e-04
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 42 5e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 42 6e-04
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 41 0.001
gi|18641360 collectin sub-family member 12 [Homo sapiens] 41 0.001
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 40 0.001
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 40 0.001
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 40 0.001
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 40 0.001
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 40 0.001
gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens] 40 0.001
gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens] 40 0.001
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 40 0.002
>gi|239747216 PREDICTED: hypothetical protein XP_002346941 [Homo
sapiens]
Length = 245
Score = 509 bits (1310), Expect = e-144
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MAVPEASPRILGGWVTSPLLLGLVEGSVVLTPPGILLRGSKDSVNPLVCSVMGVAVVVVV 60
MAVPEASPRILGGWVTSPLLLGLVEGSVVLTPPGILLRGSKDSVNPLVCSVMGVAVVVVV
Sbjct: 1 MAVPEASPRILGGWVTSPLLLGLVEGSVVLTPPGILLRGSKDSVNPLVCSVMGVAVVVVV 60
Query: 61 VVAATVVFRVCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGR 120
VVAATVVFRVCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGR
Sbjct: 61 VVAATVVFRVCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGR 120
Query: 121 RGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDP 180
RGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDP
Sbjct: 121 RGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDP 180
Query: 181 RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG
Sbjct: 181 RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
Query: 241 HGAES 245
HGAES
Sbjct: 241 HGAES 245
>gi|239741024 PREDICTED: hypothetical protein XP_002342070 [Homo
sapiens]
Length = 245
Score = 509 bits (1310), Expect = e-144
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MAVPEASPRILGGWVTSPLLLGLVEGSVVLTPPGILLRGSKDSVNPLVCSVMGVAVVVVV 60
MAVPEASPRILGGWVTSPLLLGLVEGSVVLTPPGILLRGSKDSVNPLVCSVMGVAVVVVV
Sbjct: 1 MAVPEASPRILGGWVTSPLLLGLVEGSVVLTPPGILLRGSKDSVNPLVCSVMGVAVVVVV 60
Query: 61 VVAATVVFRVCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGR 120
VVAATVVFRVCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGR
Sbjct: 61 VVAATVVFRVCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGR 120
Query: 121 RGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDP 180
RGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDP
Sbjct: 121 RGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDP 180
Query: 181 RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG
Sbjct: 181 RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
Query: 241 HGAES 245
HGAES
Sbjct: 241 HGAES 245
>gi|239752679 PREDICTED: hypothetical protein [Homo sapiens]
Length = 245
Score = 497 bits (1279), Expect = e-141
Identities = 240/245 (97%), Positives = 240/245 (97%)
Query: 1 MAVPEASPRILGGWVTSPLLLGLVEGSVVLTPPGILLRGSKDSVNPLVCSVMGVAVVVVV 60
MAVPEASPRILGGWVTS LLLGLVE SVVLTPPGILLRGSKDSVNPLVCSVMGV VVVVV
Sbjct: 1 MAVPEASPRILGGWVTSLLLLGLVESSVVLTPPGILLRGSKDSVNPLVCSVMGVPVVVVV 60
Query: 61 VVAATVVFRVCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGR 120
VV TVVFRVCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGR
Sbjct: 61 VVPPTVVFRVCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGR 120
Query: 121 RGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDP 180
RGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDP
Sbjct: 121 RGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDP 180
Query: 181 RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG
Sbjct: 181 RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
Query: 241 HGAES 245
HGAES
Sbjct: 241 HGAES 245
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 47.0 bits (110), Expect = 2e-05
Identities = 64/217 (29%), Positives = 79/217 (36%), Gaps = 47/217 (21%)
Query: 70 VCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE-GRAG 127
+CDE C G E P QE + GP G G RG RG G GR G
Sbjct: 74 ICDETKNCPGAEVPEGECCPVCPDGSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDG 133
Query: 128 FGSSWGLG--------------------QSCLGHE----GGRLVPGPVGPSGSRHLHLPV 163
GL Q G++ GG VPGP+GPSG R L P
Sbjct: 134 IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPP 193
Query: 164 ----------DPLHSGRPGA--PHRGRDP-----RWLSTPKTPQPGRPGRRPRQEPELRP 206
P G PGA P R P + + +PGRPG R P+
Sbjct: 194 GAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQ--- 250
Query: 207 RAQGLTGGQVHGELKHGYQYPGM-ASEGAARPADGHG 242
A+GL G +K + G+ ++G A PA G
Sbjct: 251 GARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKG 287
Score = 45.1 bits (105), Expect = 6e-05
Identities = 58/193 (30%), Positives = 67/193 (34%), Gaps = 43/193 (22%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RG-------------RRGE 123
G P + G A+ P V + P GP G G RG RG R G
Sbjct: 437 GAPGSKGDTGAKGEPGPVGVQGPP------GPAGEEGKRGARGEPGPTGLPGPPGERGGP 490
Query: 124 GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWL 183
G GF + G+ G G R PGP GP GS P +GRPG
Sbjct: 491 GSRGFPGADGVAGP-KGPAGERGSPGPAGPKGS--------PGEAGRPGEAGLPGAKGLT 541
Query: 184 STP-------KTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASE---- 232
+P KT PG G+ R P P A+G G K PG A E
Sbjct: 542 GSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVP 601
Query: 233 ---GAARPADGHG 242
GA PA G
Sbjct: 602 GPPGAVGPAGKDG 614
Score = 36.2 bits (82), Expect = 0.027
Identities = 47/164 (28%), Positives = 58/164 (35%), Gaps = 43/164 (26%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE-------GRAGF-- 128
GPA + ET P A P + RGP G +G RG +G GE G GF
Sbjct: 1058 GPAGKSGDRGETGPAGP--AGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSG 1115
Query: 129 --------GSSWGLGQS----------------CLGHEGGRLVPGPVGPSGSR------- 157
GS G S G +G +PGP+GP G R
Sbjct: 1116 LQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAG 1175
Query: 158 HLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQE 201
+ P P G PG P G D +L P + GR R +
Sbjct: 1176 PVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKAHDGGRYYRAD 1219
Score = 33.1 bits (74), Expect = 0.23
Identities = 52/163 (31%), Positives = 59/163 (36%), Gaps = 42/163 (25%)
Query: 108 GPTGHRGGRG-RGRRGE-GRAGFGSSWGL-GQ-------SCLGHEGGRLVPGPVGPSGS- 156
GPTG RG G RG G G AGF G GQ G +G PGP GP+G
Sbjct: 791 GPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPP 850
Query: 157 ---RHLHLP---------VDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRP-----GRRPR 199
++ P P +G PGA R P P P P G+ PR
Sbjct: 851 GPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPR 910
Query: 200 QE--PELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
E P RP G G PG A E + ADG
Sbjct: 911 GETGPAGRPGEVGPPGP------------PGPAGEKGSPGADG 941
Score = 32.0 bits (71), Expect = 0.50
Identities = 36/131 (27%), Positives = 46/131 (35%), Gaps = 13/131 (9%)
Query: 86 EAAETVPLQVPLAPPQEGLLLR-GPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGG 144
+A P P +P + G + GP G G RGR G G + G G G
Sbjct: 279 DAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGR----PGAPGPAGARGND----GATGA 330
Query: 145 RLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPEL 204
PGP GP+G V P P P+ + +PG PG P
Sbjct: 331 AGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV----RGEPGPPGPAGAAGPAG 386
Query: 205 RPRAQGLTGGQ 215
P A G G +
Sbjct: 387 NPGADGQPGAK 397
Score = 32.0 bits (71), Expect = 0.50
Identities = 51/174 (29%), Positives = 60/174 (34%), Gaps = 22/174 (12%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRGR-GRRG-EGRAGFGSSWGLG 135
GP + P P A Q G++ GP G G G+ G RG G G G
Sbjct: 554 GPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKD 613
Query: 136 QSCLGHEGGRLVPGPVGPSGSRHLHLPV-DPLHSGRP---GAPHRGRDPRWLSTP---KT 188
G G + PGP GP+G R P P G P G P P P
Sbjct: 614 ----GEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGA 669
Query: 189 PQP-------GRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGM-ASEGA 234
P P G PG R Q P +G G + K PG S+GA
Sbjct: 670 PGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGA 723
Score = 32.0 bits (71), Expect = 0.50
Identities = 45/169 (26%), Positives = 59/169 (34%), Gaps = 17/169 (10%)
Query: 79 GPAASGVEAAETVPLQVP-LAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS 137
GP+ + E P+ P LA P G G G GR + G + G
Sbjct: 986 GPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPP 1045
Query: 138 CLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRR 197
G G PGPVGP+G P P P R P + P+ P+ G G
Sbjct: 1046 --GAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGP---AGPQGPR-GDKGET 1099
Query: 198 PRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASE----GAARPADGHG 242
Q +G+ G + L+ PG E GA+ PA G
Sbjct: 1100 GEQGD------RGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRG 1142
Score = 30.8 bits (68), Expect = 1.1
Identities = 40/144 (27%), Positives = 50/144 (34%), Gaps = 16/144 (11%)
Query: 108 GPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPV-DPL 166
GPTG G G + G G G +G R PGP GP+G+ P +P
Sbjct: 335 GPTGPAGPPGFPGAVGAKGEAGPQGPRGSE--GPQGVRGEPGPPGPAGAAG---PAGNPG 389
Query: 167 HSGRPGAPHRGRDPRWLSTPKTP----------QPGRPGRRPRQEPELRPRAQGLTGGQV 216
G+PGA P P P G PG + P ++G TG +
Sbjct: 390 ADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKG 449
Query: 217 HGELKHGYQYPGMASEGAARPADG 240
PG A E R A G
Sbjct: 450 EPGPVGVQGPPGPAGEEGKRGARG 473
Score = 30.0 bits (66), Expect = 1.9
Identities = 45/153 (29%), Positives = 57/153 (37%), Gaps = 20/153 (13%)
Query: 73 ELSLCGGPAASGVEAAETVP--------LQVPLAPPQEGLL-LRGPTGHRGGRGR-GRRG 122
E + G P +G A P P AP +G L+G G RG G G +G
Sbjct: 684 ERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKG 743
Query: 123 EGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRW 182
+ R G G G +G R + GP+GP G P D SG P P R
Sbjct: 744 D-RGDAGPKGADGSP--GKDGVRGLTGPIGPPGP--AGAPGDKGESG-PSGPAGPTGARG 797
Query: 183 LSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQ 215
+ +PG PG P P A G G +
Sbjct: 798 APGDR-GEPGPPGPAGFAGP---PGADGQPGAK 826
Score = 28.9 bits (63), Expect = 4.3
Identities = 46/164 (28%), Positives = 52/164 (31%), Gaps = 44/164 (26%)
Query: 78 GGPAASGVEAAETVPLQV-PLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWG--- 133
GG G P +V P PP GP G +G G +G AG + G
Sbjct: 905 GGKGPRGETGPAGRPGEVGPPGPP-------GPAGEKGSPG----ADGPAGAPGTPGPQG 953
Query: 134 -LGQSCL----GHEGGRLVPGPVGPSGSRHLHLPV-------------------DPLHSG 169
GQ + G G R PG GPSG P P SG
Sbjct: 954 IAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESG 1013
Query: 170 RPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTG 213
R GAP P + PG G R P P A G G
Sbjct: 1014 REGAPGAEGSP-----GRDGSPGAKGDRGETGPAGPPGAPGAPG 1052
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 47.0 bits (110), Expect = 2e-05
Identities = 49/124 (39%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGEGRAGFGSSW 132
L G P ASG + A L P E RGPTG RG RG RG G+ A G+S
Sbjct: 727 LGFPGFPGASGEKGARG--LSGKSGPRGE----RGPTGPRGQRGPRGATGKSGAK-GTSG 779
Query: 133 GLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAP-HRGRDPRWLSTPKTPQP 191
G G G G R +PGP GP+G P P G+ G P H G+ KT P
Sbjct: 780 GDGPH--GPPGERGLPGPQGPNGFPGPKGPPGP--PGKDGLPGHPGQRGEVGFQGKTGPP 835
Query: 192 GRPG 195
G PG
Sbjct: 836 GPPG 839
Score = 41.2 bits (95), Expect = 8e-04
Identities = 41/130 (31%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 106 LRGPTGHRGGRG-RGRRG-EGRAGFGSSWGL--GQSCLGHEGGRLVPGPVGPSGSRHLHL 161
L GP G +G +G RG G +G G G+ +G G +PGP GP G++
Sbjct: 1332 LIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATG 1391
Query: 162 PVDPLHS-------GRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPR--AQGLT 212
P P G PG P P + PK + G R QE E P A G
Sbjct: 1392 PGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSP 1451
Query: 213 GG--QVHGEL 220
GG ++ G L
Sbjct: 1452 GGLEEIFGSL 1461
Score = 35.4 bits (80), Expect = 0.045
Identities = 70/236 (29%), Positives = 80/236 (33%), Gaps = 80/236 (33%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-GRRGE-GRAGF-GSSWGLG 135
GP + EA LQ Q L LRGP G G GR G G+ G G G S LG
Sbjct: 378 GPVVAAQEAQAQAILQ------QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 431
Query: 136 -------------------QSCLGHEGGRLVPGPVGPSGSRHLH----LPVDPLH----- 167
+ G +G R +PG G G R LP + H
Sbjct: 432 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTG 491
Query: 168 -SGRPGAP----HRGRD-------------PRWLSTPKTPQ--PGRPGRR---------- 197
G PG P RG D PR L PK P PG PG R
Sbjct: 492 AQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKG 551
Query: 198 ---PRQEP-----ELRPRAQGLTGGQ----VHGELKHGYQYPGMASEGAARPADGH 241
P+ EP + P QGL G Q HGE K PG+ + GH
Sbjct: 552 SLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGE-KGPQGKPGLPGMPGSDGPPGH 606
Score = 32.7 bits (73), Expect = 0.29
Identities = 33/112 (29%), Positives = 40/112 (35%), Gaps = 19/112 (16%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPL 166
RGP GH G +G EG GF G +G +G +PGP G G V P+
Sbjct: 1045 RGPQGHFGAKG----DEGTRGFNGPPG----PIGLQG---LPGPSGEKGETG---DVGPM 1090
Query: 167 HSGRPGAPHRGRDPRWLSTPKTP-----QPGRPGRRPRQEPELRPRAQGLTG 213
P P P P+ P G PG + P QG G
Sbjct: 1091 GPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPG 1142
Score = 32.3 bits (72), Expect = 0.39
Identities = 42/136 (30%), Positives = 50/136 (36%), Gaps = 21/136 (15%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS 137
G P +G E + P P AP ++G P G RG G R G AG G
Sbjct: 869 GLPGTAGKEGTKGDP-GPPGAPGKDG-----PAGLRGFPGE-RGLPGTAG-------GPG 914
Query: 138 CLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRR 197
G+EG PGP G G R P+ G PG P P + G PG +
Sbjct: 915 LKGNEGPSGPPGPAGSPGERGAAGSGGPI--GPPGRPGPQGPP-----GAAGEKGVPGEK 967
Query: 198 PRQEPELRPRAQGLTG 213
P R QG G
Sbjct: 968 GPIGPTGRDGVQGPVG 983
Score = 30.0 bits (66), Expect = 1.9
Identities = 49/169 (28%), Positives = 60/169 (35%), Gaps = 42/169 (24%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-------GRRGE----GRA 126
G SG + P + L PQ GP G G G+ G+RGE G+
Sbjct: 773 GAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKT 832
Query: 127 G-------FGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHL-------HLPVDPLHSGRPG 172
G G G++ G G R PGP GP G + L DP G PG
Sbjct: 833 GPPGPPGVVGPQGAAGET--GPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDP---GPPG 887
Query: 173 APHRGRD--------PRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTG 213
AP G+D P P T G PG + + P P G G
Sbjct: 888 AP--GKDGPAGLRGFPGERGLPGT--AGGPGLKGNEGPSGPPGPAGSPG 932
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 47.0 bits (110), Expect = 2e-05
Identities = 49/124 (39%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGEGRAGFGSSW 132
L G P ASG + A L P E RGPTG RG RG RG G+ A G+S
Sbjct: 706 LGFPGFPGASGEKGARG--LSGKSGPRGE----RGPTGPRGQRGPRGATGKSGAK-GTSG 758
Query: 133 GLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAP-HRGRDPRWLSTPKTPQP 191
G G G G R +PGP GP+G P P G+ G P H G+ KT P
Sbjct: 759 GDGPH--GPPGERGLPGPQGPNGFPGPKGPPGP--PGKDGLPGHPGQRGEVGFQGKTGPP 814
Query: 192 GRPG 195
G PG
Sbjct: 815 GPPG 818
Score = 41.2 bits (95), Expect = 8e-04
Identities = 41/130 (31%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 106 LRGPTGHRGGRG-RGRRG-EGRAGFGSSWGL--GQSCLGHEGGRLVPGPVGPSGSRHLHL 161
L GP G +G +G RG G +G G G+ +G G +PGP GP G++
Sbjct: 1311 LIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATG 1370
Query: 162 PVDPLHS-------GRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPR--AQGLT 212
P P G PG P P + PK + G R QE E P A G
Sbjct: 1371 PGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSP 1430
Query: 213 GG--QVHGEL 220
GG ++ G L
Sbjct: 1431 GGLEEIFGSL 1440
Score = 35.4 bits (80), Expect = 0.045
Identities = 70/236 (29%), Positives = 80/236 (33%), Gaps = 80/236 (33%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-GRRGE-GRAGF-GSSWGLG 135
GP + EA LQ Q L LRGP G G GR G G+ G G G S LG
Sbjct: 357 GPVVAAQEAQAQAILQ------QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 410
Query: 136 -------------------QSCLGHEGGRLVPGPVGPSGSRHLH----LPVDPLH----- 167
+ G +G R +PG G G R LP + H
Sbjct: 411 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTG 470
Query: 168 -SGRPGAP----HRGRD-------------PRWLSTPKTPQ--PGRPGRR---------- 197
G PG P RG D PR L PK P PG PG R
Sbjct: 471 AQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKG 530
Query: 198 ---PRQEP-----ELRPRAQGLTGGQ----VHGELKHGYQYPGMASEGAARPADGH 241
P+ EP + P QGL G Q HGE K PG+ + GH
Sbjct: 531 SLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGE-KGPQGKPGLPGMPGSDGPPGH 585
Score = 32.7 bits (73), Expect = 0.29
Identities = 33/112 (29%), Positives = 40/112 (35%), Gaps = 19/112 (16%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPL 166
RGP GH G +G EG GF G +G +G +PGP G G V P+
Sbjct: 1024 RGPQGHFGAKG----DEGTRGFNGPPG----PIGLQG---LPGPSGEKGETG---DVGPM 1069
Query: 167 HSGRPGAPHRGRDPRWLSTPKTP-----QPGRPGRRPRQEPELRPRAQGLTG 213
P P P P+ P G PG + P QG G
Sbjct: 1070 GPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPG 1121
Score = 32.3 bits (72), Expect = 0.39
Identities = 42/136 (30%), Positives = 50/136 (36%), Gaps = 21/136 (15%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS 137
G P +G E + P P AP ++G P G RG G R G AG G
Sbjct: 848 GLPGTAGKEGTKGDP-GPPGAPGKDG-----PAGLRGFPGE-RGLPGTAG-------GPG 893
Query: 138 CLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRR 197
G+EG PGP G G R P+ G PG P P + G PG +
Sbjct: 894 LKGNEGPSGPPGPAGSPGERGAAGSGGPI--GPPGRPGPQGPP-----GAAGEKGVPGEK 946
Query: 198 PRQEPELRPRAQGLTG 213
P R QG G
Sbjct: 947 GPIGPTGRDGVQGPVG 962
Score = 30.0 bits (66), Expect = 1.9
Identities = 49/169 (28%), Positives = 60/169 (35%), Gaps = 42/169 (24%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-------GRRGE----GRA 126
G SG + P + L PQ GP G G G+ G+RGE G+
Sbjct: 752 GAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKT 811
Query: 127 G-------FGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHL-------HLPVDPLHSGRPG 172
G G G++ G G R PGP GP G + L DP G PG
Sbjct: 812 GPPGPPGVVGPQGAAGET--GPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDP---GPPG 866
Query: 173 APHRGRD--------PRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTG 213
AP G+D P P T G PG + + P P G G
Sbjct: 867 AP--GKDGPAGLRGFPGERGLPGT--AGGPGLKGNEGPSGPPGPAGSPG 911
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 47.0 bits (110), Expect = 2e-05
Identities = 49/124 (39%), Positives = 56/124 (45%), Gaps = 13/124 (10%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGEGRAGFGSSW 132
L G P ASG + A L P E RGPTG RG RG RG G+ A G+S
Sbjct: 813 LGFPGFPGASGEKGARG--LSGKSGPRGE----RGPTGPRGQRGPRGATGKSGAK-GTSG 865
Query: 133 GLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAP-HRGRDPRWLSTPKTPQP 191
G G G G R +PGP GP+G P P G+ G P H G+ KT P
Sbjct: 866 GDGPH--GPPGERGLPGPQGPNGFPGPKGPPGP--PGKDGLPGHPGQRGEVGFQGKTGPP 921
Query: 192 GRPG 195
G PG
Sbjct: 922 GPPG 925
Score = 41.2 bits (95), Expect = 8e-04
Identities = 41/130 (31%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 106 LRGPTGHRGGRG-RGRRG-EGRAGFGSSWGL--GQSCLGHEGGRLVPGPVGPSGSRHLHL 161
L GP G +G +G RG G +G G G+ +G G +PGP GP G++
Sbjct: 1418 LIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGLPGPAGPKGAKGATG 1477
Query: 162 PVDPLHS-------GRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPR--AQGLT 212
P P G PG P P + PK + G R QE E P A G
Sbjct: 1478 PGGPKGEKGVQGPPGHPGPPGEVIQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSP 1537
Query: 213 GG--QVHGEL 220
GG ++ G L
Sbjct: 1538 GGLEEIFGSL 1547
Score = 35.4 bits (80), Expect = 0.045
Identities = 70/236 (29%), Positives = 80/236 (33%), Gaps = 80/236 (33%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-GRRGE-GRAGF-GSSWGLG 135
GP + EA LQ Q L LRGP G G GR G G+ G G G S LG
Sbjct: 464 GPVVAAQEAQAQAILQ------QARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLG 517
Query: 136 -------------------QSCLGHEGGRLVPGPVGPSGSRHLH----LPVDPLH----- 167
+ G +G R +PG G G R LP + H
Sbjct: 518 PQGPRGPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHRGDTG 577
Query: 168 -SGRPGAP----HRGRD-------------PRWLSTPKTPQ--PGRPGRR---------- 197
G PG P RG D PR L PK P PG PG R
Sbjct: 578 AQGLPGPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKG 637
Query: 198 ---PRQEP-----ELRPRAQGLTGGQ----VHGELKHGYQYPGMASEGAARPADGH 241
P+ EP + P QGL G Q HGE K PG+ + GH
Sbjct: 638 SLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGE-KGPQGKPGLPGMPGSDGPPGH 692
Score = 32.7 bits (73), Expect = 0.29
Identities = 33/112 (29%), Positives = 40/112 (35%), Gaps = 19/112 (16%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPL 166
RGP GH G +G EG GF G +G +G +PGP G G V P+
Sbjct: 1131 RGPQGHFGAKG----DEGTRGFNGPPG----PIGLQG---LPGPSGEKGETG---DVGPM 1176
Query: 167 HSGRPGAPHRGRDPRWLSTPKTP-----QPGRPGRRPRQEPELRPRAQGLTG 213
P P P P+ P G PG + P QG G
Sbjct: 1177 GPPGPPGPRGPAGPNGADGPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPG 1228
Score = 32.3 bits (72), Expect = 0.39
Identities = 42/136 (30%), Positives = 50/136 (36%), Gaps = 21/136 (15%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS 137
G P +G E + P P AP ++G P G RG G R G AG G
Sbjct: 955 GLPGTAGKEGTKGDP-GPPGAPGKDG-----PAGLRGFPGE-RGLPGTAG-------GPG 1000
Query: 138 CLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRR 197
G+EG PGP G G R P+ G PG P P + G PG +
Sbjct: 1001 LKGNEGPSGPPGPAGSPGERGAAGSGGPI--GPPGRPGPQGPP-----GAAGEKGVPGEK 1053
Query: 198 PRQEPELRPRAQGLTG 213
P R QG G
Sbjct: 1054 GPIGPTGRDGVQGPVG 1069
Score = 30.0 bits (66), Expect = 1.9
Identities = 49/169 (28%), Positives = 60/169 (35%), Gaps = 42/169 (24%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-------GRRGE----GRA 126
G SG + P + L PQ GP G G G+ G+RGE G+
Sbjct: 859 GAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKT 918
Query: 127 G-------FGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHL-------HLPVDPLHSGRPG 172
G G G++ G G R PGP GP G + L DP G PG
Sbjct: 919 GPPGPPGVVGPQGAAGET--GPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDP---GPPG 973
Query: 173 APHRGRD--------PRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTG 213
AP G+D P P T G PG + + P P G G
Sbjct: 974 AP--GKDGPAGLRGFPGERGLPGT--AGGPGLKGNEGPSGPPGPAGSPG 1018
Score = 27.7 bits (60), Expect = 9.5
Identities = 32/98 (32%), Positives = 34/98 (34%), Gaps = 16/98 (16%)
Query: 103 GLLLRGPTGHRGGRGRGRRG-EGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHL 161
G L T H G G RG +G G + E G LV GP GP G L
Sbjct: 361 GPALSAETAHSGAAAHGPRGLKGEKGEPAVL---------EPGMLVEGPPGPEGPAGLIG 411
Query: 162 PVDPLHSGRPG----APHRGRDPRWLSTPKTPQPGRPG 195
P P G PG RG R PG PG
Sbjct: 412 P--PGIQGNPGPVGDPGERGPPGRAGLPGSDGAPGPPG 447
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 45.8 bits (107), Expect = 3e-05
Identities = 55/179 (30%), Positives = 73/179 (40%), Gaps = 37/179 (20%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG----RGRRGE----GRAGFG 129
G P A G+ + +P P PP GPTG +G +G +G G G + G
Sbjct: 794 GEPGAPGLPGIQGLP--GPRGPP-------GPTGEKGAQGSPGVKGATGPVGPPGASVSG 844
Query: 130 SSWGLGQSCLGHEGGRLVPGPVGPSGSR----HLHLPV--DPLHSGRPGAPHRGRDPRWL 183
GQ G G R PG GP G + P D + SG PGAP W
Sbjct: 845 PPGRDGQQ--GQTGLRGTPGEKGPRGEKGEPGECSCPSQGDLIFSGMPGAPGLWMGSSWQ 902
Query: 184 STPKTPQPGRPGRRPRQEPELRPRAQGLTGGQ-VHGELKHGYQYPGMASEGAARPADGH 241
P+ P PG PG P P + P QG+ G + G+ PG+ +E + P + H
Sbjct: 903 PGPQGP-PGIPG--PPGPPGV-PGLQGVPGNNGLPGQ-------PGLTAELGSLPIEQH 950
Score = 37.7 bits (86), Expect = 0.009
Identities = 37/111 (33%), Positives = 45/111 (40%), Gaps = 10/111 (9%)
Query: 106 LRGPTGHRGGRG-RGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVD 164
L G G +G G +G +G+G S G G G PGP G G + P
Sbjct: 704 LSGEPGVQGPAGPKGEKGDGCTACPSLQGTVTDMAGRPGQ---PGPKGEQGPEGVGRPGK 760
Query: 165 PLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQ 215
P G+PG P P +PG PGR Q P+ P A GL G Q
Sbjct: 761 P---GQPGLPGVQGPPGLKGV--QGEPGPPGRGV-QGPQGEPGAPGLPGIQ 805
Score = 32.7 bits (73), Expect = 0.29
Identities = 45/160 (28%), Positives = 59/160 (36%), Gaps = 39/160 (24%)
Query: 73 ELSLCGGPAASGVEAAE---------TVPLQVPLAPPQE----GLLLRGPTGHRGGRG-R 118
E L G P + G + A PLQ P E G L GP+G G G +
Sbjct: 341 ERGLPGPPGSKGEKGARGNDCVRISPDAPLQCAEGPKGEKGESGAL--GPSGLPGSTGEK 398
Query: 119 GRRGE-GRAGF-------GSSWGLGQSCL-------------GHEGGRLVPGPVGPSGSR 157
G++GE G G G G+ C+ G EG PGP G G
Sbjct: 399 GQKGEKGDGGIKGVPGKPGRDGRPGEICVIGPKGQKGDPGFVGPEGLAGEPGPPGLPGPP 458
Query: 158 HLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTP--QPGRPG 195
+ LP P G P P + + + P +PG+PG
Sbjct: 459 GIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPG 498
Score = 32.7 bits (73), Expect = 0.29
Identities = 37/120 (30%), Positives = 44/120 (36%), Gaps = 27/120 (22%)
Query: 106 LRGPTGHRGGRGR-GRRG-EGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSG-------- 155
+RGP+G G G G G +G AG G G G R PGP GP G
Sbjct: 1190 IRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKD----GKPGLRGDPGPAGPPGLMGPPGFK 1245
Query: 156 --SRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTG 213
+ H LP G+PG P T +PG G P+ RP G G
Sbjct: 1246 GKTGHPGLPGPKGDCGKPGPP-----------GSTGRPGAEGEPGAMGPQGRPGPPGHVG 1294
Score = 32.7 bits (73), Expect = 0.29
Identities = 41/162 (25%), Positives = 51/162 (31%), Gaps = 25/162 (15%)
Query: 96 PLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSG 155
P PP L GP G +G G + G G + G G PG +GP G
Sbjct: 1232 PAGPPG----LMGPPGFKGKTGHPGLPGPKGDCGKPGPPGST--GRPGAEGEPGAMGPQG 1285
Query: 156 SRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQ-------------PGRPGRRPRQEP 202
P P H G PG P + P +S PG+PG P
Sbjct: 1286 R-----PGPPGHVGPPGPPGQP-GPAGISAVGLKGDRGATGERGLAGLPGQPGPPGHPGP 1339
Query: 203 ELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADGHGAE 244
P G G + + Y PG + A G E
Sbjct: 1340 PGEPGTDGAAGKEGPPGKQGFYGPPGPKGDPGAAGQKGQAGE 1381
Score = 31.6 bits (70), Expect = 0.66
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 108 GPTGHRGGRGR----GRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPV 163
G G+ G G G +GE R GS+ G+ G G +PGP GP+G R P
Sbjct: 1087 GQPGYPGATGPPGLPGIKGE-RGYTGSAGEKGEP--GPPGSEGLPGPPGPAGPRGERGPQ 1143
Query: 164 DPLHSGRPGAPHRGRDPRWLSTPKTPQ-PGRPGRRPRQEPELRPRAQGLTG 213
+SG G P + P P PG+ G P+ ++G+ G
Sbjct: 1144 G--NSGEKGDQGFQGQPGFPGPPGPPGFPGKVGSPGPPGPQAEKGSEGIRG 1192
Score = 31.6 bits (70), Expect = 0.66
Identities = 51/185 (27%), Positives = 63/185 (34%), Gaps = 59/185 (31%)
Query: 78 GGPAASGVEAAETVP-LQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE-GRAGF----GS 130
G P G E P Q PP GP G G G +G+ GE GRAG G
Sbjct: 1341 GEPGTDGAAGKEGPPGKQGFYGPP-------GPKGDPGAAGQKGQAGEKGRAGMPGGPGK 1393
Query: 131 SWGLGQ-SCLGHEGGRLVPGPVGPSGS--------------------------------- 156
S +G G G R PG GPSGS
Sbjct: 1394 SGSMGPVGPPGPAGERGHPGAPGPSGSPGLPGVPGSMGDMVNYDEIKRFIRQEIIKMFDE 1453
Query: 157 ------RHLHLPVDPLHS-GRPGAPHRGRDPRWLSTPKTP-QPGRPGRRPRQEPELRPRA 208
+ P++ + GRPG P + P P P PG PG+ R+ + P
Sbjct: 1454 RMAYYTSRMQFPMEMAAAPGRPGPPGKDGAP---GRPGAPGSPGLPGQIGREGRQGLPGV 1510
Query: 209 QGLTG 213
+GL G
Sbjct: 1511 RGLPG 1515
Score = 29.6 bits (65), Expect = 2.5
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLL----LRGPTGHRGGRGRGRRGE---------- 123
G P G + +P Q+ ++GL L G G +G G G GE
Sbjct: 1482 GAPGRPGAPGSPGLPGQIG-REGRQGLPGVRGLPGTKGEKGDIGIGIAGENGLPGPPGPQ 1540
Query: 124 GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSG 155
G G+G G +G +G +PGP GP G
Sbjct: 1541 GPPGYGKMGATGP--MGQQGIPGIPGPPGPMG 1570
Score = 28.9 bits (63), Expect = 4.3
Identities = 42/138 (30%), Positives = 45/138 (32%), Gaps = 34/138 (24%)
Query: 106 LRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDP 165
L GP G G RG EG G S G PGP+GP G P
Sbjct: 1022 LPGPPGLPGQRGE----EGPPGMRGSPG-------------PPGPIGPPGF--------P 1056
Query: 166 LHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQ 225
G PG P G T T G PG P +P G TG +K
Sbjct: 1057 GAVGSPGLP--GLQGERGLTGLTGDKGEPG------PPGQPGYPGATGPPGLPGIKGERG 1108
Query: 226 YPGMASE-GAARPADGHG 242
Y G A E G P G
Sbjct: 1109 YTGSAGEKGEPGPPGSEG 1126
Score = 28.1 bits (61), Expect = 7.3
Identities = 27/91 (29%), Positives = 37/91 (40%), Gaps = 9/91 (9%)
Query: 72 DELSLCGGPAASGVEAAETVPLQV--PLAPPQEGLLLRGPTGHRGGRGRGRRG-EGRAGF 128
D + G P G++ + P + Q + G +G G G G G GRAG
Sbjct: 535 DPVPARGDPGIQGIKGEKGEPCLSCSSVVGAQHLVSSTGASGDVGSPGFGLPGLPGRAGV 594
Query: 129 ----GSSWGLGQSCLGHEGGRLVPGPVGPSG 155
G G++ G G PGPVGP+G
Sbjct: 595 PGLKGEKGNFGEA--GPAGSPGPPGPVGPAG 623
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 44.3 bits (103), Expect = 1e-04
Identities = 52/165 (31%), Positives = 63/165 (38%), Gaps = 39/165 (23%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE-------GRAGFGS 130
GPA ET P P+ P + RGP+G +G RG +G GE G G
Sbjct: 970 GPAGKHGNRGETGP-SGPVGPAG-AVGPRGPSGPQGIRGDKGEPGEKGPRGLPGLKGHNG 1027
Query: 131 SWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPL----HSGRPG--APHRGRDPRWLS 184
GL GH G + PG VGP+G R P P +G PG P R P+
Sbjct: 1028 LQGL-PGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQGHQ 1086
Query: 185 TPKTP--QPGRPG--------------------RRPRQEPELRPR 207
P P PG PG +PR P LRP+
Sbjct: 1087 GPAGPPGPPGPPGPPGVSGGGYDFGYDGDFYRADQPRSAPSLRPK 1131
Score = 38.9 bits (89), Expect = 0.004
Identities = 42/144 (29%), Positives = 53/144 (36%), Gaps = 36/144 (25%)
Query: 101 QEGLLLRGPTGHRGGRGR-------GRRGE-------------GRAGFGSSW-------- 132
QE + +GP G RG RG GR GE G G G ++
Sbjct: 26 QEETVRKGPAGDRGPRGERGPPGPPGRDGEDGPTGPPGPPGPPGPPGLGGNFAAQYDGKG 85
Query: 133 -GLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP 191
GLG +G G R PG G G + P +G PG P + P P P P
Sbjct: 86 VGLGPGPMGLMGPRGPPGAAGAPGPQGFQGP-----AGEPGEPGQ-TGPAGARGPAGP-P 138
Query: 192 GRPGRRPRQEPELRPRAQGLTGGQ 215
G+ G RP +G+ G Q
Sbjct: 139 GKAGEDGHPGKPGRPGERGVVGPQ 162
Score = 38.5 bits (88), Expect = 0.005
Identities = 62/182 (34%), Positives = 73/182 (40%), Gaps = 36/182 (19%)
Query: 84 GVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE-GRAGFGSSWGL----GQS 137
GV A P + +A P RGP G G G G GE GR G + G GQ
Sbjct: 886 GVAGAVGEPGPLGIAGPPGA---RGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQP 942
Query: 138 CLGHEGGRLVP---GPVGPSGSRHLHLPVDPL--HSGR-------PGAPHRGRDPRWLST 185
GH+G R P GPVG +G+ H PV P H R P P PR S
Sbjct: 943 --GHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSG 1000
Query: 186 PK--TPQPGRPGRR-PRQEPELRPR--AQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
P+ G PG + PR P L+ QGL G H HG Q + G+ PA
Sbjct: 1001 PQGIRGDKGEPGEKGPRGLPGLKGHNGLQGLPGIAGH----HGDQ----GAPGSVGPAGP 1052
Query: 241 HG 242
G
Sbjct: 1053 RG 1054
Score = 35.4 bits (80), Expect = 0.045
Identities = 48/154 (31%), Positives = 61/154 (39%), Gaps = 28/154 (18%)
Query: 76 LCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE----GRAGF-G 129
L G P + G+ A+ + + P GP G RG G GR GE G G G
Sbjct: 398 LRGSPGSRGLPGADG---RAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPG 454
Query: 130 SSWGLGQSCLGHEG--------GRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPR 181
S +G + G EG GR PGP+GP+G+R +P + G PG DP
Sbjct: 455 SPGNIGPA--GKEGPVGLPGIDGR--PGPIGPAGARG-----EPGNIGFPGPKGPTGDPG 505
Query: 182 WLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQ 215
G G R P+ AQG G Q
Sbjct: 506 --KNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQ 537
Score = 32.7 bits (73), Expect = 0.29
Identities = 44/142 (30%), Positives = 56/142 (39%), Gaps = 23/142 (16%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQ-EGLLLRGPTGHRGGRGR-GRRG-EGRAGF-GSSWG 133
G P GV+ + Q P PP +GL GP+G G G+ G RG G G G +
Sbjct: 532 GPPGPQGVQGGKGE--QGPPGPPGFQGL--PGPSGPAGEVGKPGERGLHGEFGLPGPAGP 587
Query: 134 LGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGR 193
G+ G G GP GP GSR SG PG +P + T P
Sbjct: 588 RGER--GPPGESGAAGPTGPIGSRG--------PSGPPGPDGNKGEPGVVGAVGTAGPSG 637
Query: 194 PGRRPRQEPELRPRAQGLTGGQ 215
P P + A G+ GG+
Sbjct: 638 PSGLPGER-----GAAGIPGGK 654
Score = 31.6 bits (70), Expect = 0.66
Identities = 47/156 (30%), Positives = 56/156 (35%), Gaps = 23/156 (14%)
Query: 106 LRGPTGHRGGRGR-GRRGEGRAGFGSSWGLGQSCLGHEGGRL-VPGPVGPSGSRHLHLPV 163
L+G G G +G G GE G+ G L E GR+ PGP G GS PV
Sbjct: 188 LKGQPGAPGVKGEPGAPGEN----GTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPV 243
Query: 164 DPL-------HSGRPGAPH--------RGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRA 208
P G PGAP P + P+ + G PG P P A
Sbjct: 244 GPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPR-GEVGLPGLSGPVGPPGNPGA 302
Query: 209 QGLTGGQVHGELKHGYQYPGM-ASEGAARPADGHGA 243
GLTG + L PG+ G P GA
Sbjct: 303 NGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGA 338
Score = 31.6 bits (70), Expect = 0.66
Identities = 45/151 (29%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 108 GPTGHRGGRG-RGRRGE-GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLH-LPVD 164
GP G+ G G G +G G G + GL G R +PGPVG +G+ L +
Sbjct: 295 GPPGNPGANGLTGAKGAAGLPGVAGAPGL-------PGPRGIPGPVGAAGATGARGLVGE 347
Query: 165 PLHSGRPGAPHRGRDPRWLSTPKTPQP-GRPGRR----------PRQEPELR--PRAQGL 211
P +G G +P P P G G+R P P LR P ++GL
Sbjct: 348 PGPAGSKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGL 407
Query: 212 TGGQVHGELKHGYQYPGMASEGAARPADGHG 242
G + + G P S GA+ PA G
Sbjct: 408 PG----ADGRAGVMGP-PGSRGASGPAGVRG 433
Score = 30.4 bits (67), Expect = 1.5
Identities = 41/148 (27%), Positives = 51/148 (34%), Gaps = 30/148 (20%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLG-- 135
G P G A P + P +GPTG G G +G AG + G
Sbjct: 475 GRPGPIGPAGARGEPGNIGFPGP------KGPTGDPGKNG----DKGHAGLAGARGAPGP 524
Query: 136 ---------QSCLGHEGGRLVPGPVGPSGSRHLHLPVDPL-HSGRPGAPHRGRDPRWLST 185
G +GG+ GP GP G + L P P G+PG RG +
Sbjct: 525 DGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPG--ERGLHGEF--- 579
Query: 186 PKTPQPGRPGRRPRQEPELRPRAQGLTG 213
PG G R + P A G TG
Sbjct: 580 ---GLPGPAGPRGERGPPGESGAAGPTG 604
Score = 30.4 bits (67), Expect = 1.5
Identities = 42/143 (29%), Positives = 52/143 (36%), Gaps = 14/143 (9%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGEG----RAGF-GSS 131
G P A G A+ + + P + GP G G G G RG+G GF G++
Sbjct: 733 GQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAA 792
Query: 132 WGLGQSCLGHEGGRLVPGPVGPSGSRHLHLP-VDPLHSGRPGAPHRGRDPRWLSTPKTPQ 190
G G G PGP GP+G L P D GR G P + +
Sbjct: 793 GRTGPP--GPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAG-----E 845
Query: 191 PGRPGRRPRQEPELRPRAQGLTG 213
G G P P QGL G
Sbjct: 846 KGPSGEAGTAGPPGTPGPQGLLG 868
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 43.9 bits (102), Expect = 1e-04
Identities = 42/132 (31%), Positives = 49/132 (37%), Gaps = 19/132 (14%)
Query: 111 GHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGR 170
G RGGR G GR G G +G G R GP G G+ H P H G
Sbjct: 724 GARGGRSGGGPPNGRGGPGG------GMVGGGGHRPHEGPGGGMGNSSGHRP----HEGP 773
Query: 171 PGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMA 230
G G P P G G RP + P G++GG G H GM
Sbjct: 774 GGGMGSGHRPH--EGPGGSMGGGGGHRPHEGP-----GGGISGGS--GHRPHEGPGGGMG 824
Query: 231 SEGAARPADGHG 242
+ G RP +G G
Sbjct: 825 AGGGHRPHEGPG 836
Score = 37.0 bits (84), Expect = 0.016
Identities = 35/119 (29%), Positives = 44/119 (36%), Gaps = 16/119 (13%)
Query: 140 GHEGGRLVPGPVGP-----SGSRHLHLPVDPLHSGR--------PGAPHRGRDPRWLSTP 186
G GG + P +GP G P DP+ G PG HRGR R + P
Sbjct: 656 GGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGPGPGPGPYHRGRGGRGGNEP 715
Query: 187 KTPQPGRPGRRPRQEPELRPRAQGLTGGQV---HGELKHGYQYPGMASEGAARPADGHG 242
P P G R + P +G GG + G H GM + RP +G G
Sbjct: 716 PPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGHRPHEGPG 774
Score = 35.0 bits (79), Expect = 0.059
Identities = 37/119 (31%), Positives = 40/119 (33%), Gaps = 28/119 (23%)
Query: 106 LRGPTGHR------GGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHL 159
+ G +GHR GG G G G G S G HEG PG GP G R
Sbjct: 807 ISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGGHRPHEG----PGHGGPHGHRPH 862
Query: 160 HLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHG 218
+P G G HRG P P G G R G GG HG
Sbjct: 863 DVP------GHRGHDHRGPPPHEHRGHDGPGHGGGGHR------------GHDGGHSHG 903
Score = 30.8 bits (68), Expect = 1.1
Identities = 33/89 (37%), Positives = 35/89 (39%), Gaps = 16/89 (17%)
Query: 108 GPTGHRGGRGRGRRGEGRAGFGSSWGLGQ-------SCLGHEGG-RLVPGPVGPSGSRHL 159
GP G GG G R EG G G S G G +G GG R GP G G
Sbjct: 786 GPGGSMGGGGGHRPHEGPGG-GISGGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGG 844
Query: 160 HLPVD-PLHSGRPG------APHRGRDPR 181
H P + P H G G HRG D R
Sbjct: 845 HRPHEGPGHGGPHGHRPHDVPGHRGHDHR 873
Score = 30.0 bits (66), Expect = 1.9
Identities = 41/144 (28%), Positives = 45/144 (31%), Gaps = 34/144 (23%)
Query: 110 TGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSG 169
+GHR G G G G G G G G R GP G G+ H P H G
Sbjct: 779 SGHRPHEGPGGSMGGGGGHRPHEGPGGGISGGSGHRPHEGPGGGMGAGGGHRP----HEG 834
Query: 170 RPGA--------PHRGRDPRWLSTPKTPQPGRP-GRRPRQEPELRPRAQGLTGGQVHGEL 220
G+ PH G P G P G RP P G G G
Sbjct: 835 PGGSMGGSGGHRPHEG-----------PGHGGPHGHRPHDVP-------GHRGHDHRGPP 876
Query: 221 KH---GYQYPGMASEGAARPADGH 241
H G+ PG G GH
Sbjct: 877 PHEHRGHDGPGHGGGGHRGHDGGH 900
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 43.5 bits (101), Expect = 2e-04
Identities = 50/135 (37%), Positives = 60/135 (44%), Gaps = 22/135 (16%)
Query: 78 GGPAASGVEAAETVPLQVP-LAPP----QEGLL-LRGPTGHRGGRGR-GRRGE------- 123
G P GV LQ P + PP G+ +GPTG++G +G G+ GE
Sbjct: 157 GPPGHPGVLPEGATDLQCPSICPPGPPGPPGMPGFKGPTGYKGEQGEVGKDGEKGDPGPP 216
Query: 124 GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSR-HLHLPVDPLHSGRPG-APHRG-RDP 180
G AG S GL G G R +PGP+GP G R + P G PG A RG R P
Sbjct: 217 GPAGLPGSVGLQ----GPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGP 272
Query: 181 RWLSTPKTPQPGRPG 195
PK GRPG
Sbjct: 273 EGFRGPK-GDLGRPG 286
Score = 38.9 bits (89), Expect = 0.004
Identities = 46/136 (33%), Positives = 57/136 (41%), Gaps = 18/136 (13%)
Query: 78 GGPAASGVEAAETVP-LQVPLAPPQEG--LLLRGPTGHRGGRGR-GRRGE-GRAGFGSSW 132
G P + G++ + L PL PP + + RGP G G G+ G RGE G GF
Sbjct: 220 GLPGSVGLQGPRGLRGLPGPLGPPGDRGPIGFRGPPGIPGAPGKAGDRGERGPEGFRGPK 279
Query: 133 GLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPG 192
G LG G + PG GPSG P P G+ G P G D + + PG
Sbjct: 280 G----DLGRPGPKGTPGVAGPSGE-----PGMPGKDGQNGVP--GLDGQKGEAGRNGAPG 328
Query: 193 RPGRRPRQEPELRPRA 208
G P P L RA
Sbjct: 329 EKG--PNGLPGLPGRA 342
Score = 31.6 bits (70), Expect = 0.66
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 9/68 (13%)
Query: 108 GPTGHRGGRGR-GRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPL 166
GP+G G +G G RGE G G + G G + VPGP GP G + +P P
Sbjct: 457 GPSGLVGPKGESGSRGE----LGPKGTQGPN--GTSGVQGVPGPPGPLGLQ--GVPGVPG 508
Query: 167 HSGRPGAP 174
+G+PG P
Sbjct: 509 ITGKPGVP 516
Score = 29.3 bits (64), Expect = 3.3
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 107 RGPTGHRGGRGR----GRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLP 162
RGP G+RG G G RG + G G G EG + GP G G+
Sbjct: 577 RGPPGYRGPTGELGDPGPRG-NQGDRGDKGAAGAGLDGPEGDQGPQGPQGVPGTSKDGQD 635
Query: 163 VDPLHSGRPGAP 174
P G PG P
Sbjct: 636 GAPGEPGPPGDP 647
Score = 28.9 bits (63), Expect = 4.3
Identities = 49/156 (31%), Positives = 59/156 (37%), Gaps = 34/156 (21%)
Query: 81 AASGVEAAETVPLQVPLAPP-------QEGLL-------LRGPTGHRGGRGR-GRRGE-G 124
AA+G A+ V L P PP Q+G+ L GP G +G G+ G+ GE G
Sbjct: 21 AAAG---AQRVGLPGPPGPPGPPGKPGQDGIDGEAGPPGLPGPPGPKGAPGKPGKPGEAG 77
Query: 125 RAGFGSSWGLG-----QSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPH---- 175
G GL G G R GP GP G LP P +G G P
Sbjct: 78 LPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGL 137
Query: 176 RGRD-----PRWLSTPKTP-QPGRPGRRPRQEPELR 205
RG P P P PG PG P +L+
Sbjct: 138 RGPPGPSGLPGLPGPPGPPGPPGHPGVLPEGATDLQ 173
Score = 27.7 bits (60), Expect = 9.5
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 10/61 (16%)
Query: 106 LRGPTGHRGGRG-RGRRGE-GRAGFGSSWGLGQSC--------LGHEGGRLVPGPVGPSG 155
L G G +G +G RGR GE G AG G+ GH G GP GP G
Sbjct: 338 LPGRAGSKGEKGERGRAGELGEAGPSGEPGVPGDAGMPGERGEAGHRGSAGALGPQGPPG 397
Query: 156 S 156
+
Sbjct: 398 A 398
Score = 27.7 bits (60), Expect = 9.5
Identities = 46/153 (30%), Positives = 54/153 (35%), Gaps = 38/153 (24%)
Query: 76 LCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLG 135
LCGG + + A L+ PLAP G GP G G G
Sbjct: 528 LCGGMISEQI-AQLAAHLRKPLAPGSIGR--PGPAGPPGPPGP----------------- 567
Query: 136 QSCLGHEGGRLVPGPVGPSGSRHLHLP-VDPLHSGRPGAPHRGRD-PRWLSTPKTPQ--- 190
+GH G R PG GP+G P + G GA G D P P+ PQ
Sbjct: 568 PGSIGHPGARGPPGYRGPTGELGDPGPRGNQGDRGDKGAAGAGLDGPEGDQGPQGPQGVP 627
Query: 191 ----------PGRPGRRPRQEPELRPRAQGLTG 213
PG PG P +P L P A G G
Sbjct: 628 GTSKDGQDGAPGEPG--PPGDPGL-PGAIGAQG 657
>gi|18105032 type X collagen alpha 1 precursor [Homo sapiens]
Length = 680
Score = 43.1 bits (100), Expect = 2e-04
Identities = 60/202 (29%), Positives = 77/202 (38%), Gaps = 37/202 (18%)
Query: 78 GGPAASGVEAAE-TVPLQVPLAPPQEGLL-LRGPTGHRGGRGRGRRGE----------GR 125
G P G+ + + P P + GL +GPTG G G G+RGE G
Sbjct: 177 GAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGENGVPGQPGIKGD 236
Query: 126 AGFGSSWG-------------LGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPG 172
GF G G +G G PG G G++ LP P +G PG
Sbjct: 237 RGFPGEMGPIGPPGPQGPPGERGPEGIGKPGAAGAPGQPGIPGTK--GLPGAPGIAGPPG 294
Query: 173 APHRGRDP-RWLSTPKTPQ--PGRPGRRPRQEPELRPRAQGLTG--GQVHGELKHG---- 223
P G+ L + P PG PG + Q P P GLTG G + + G
Sbjct: 295 PPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGS 354
Query: 224 YQYPGMASE-GAARPADGHGAE 244
+ PG E G A PA GA+
Sbjct: 355 HGLPGPKGETGPAGPAGYPGAK 376
Score = 40.0 bits (92), Expect = 0.002
Identities = 43/150 (28%), Positives = 54/150 (36%), Gaps = 24/150 (16%)
Query: 76 LCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE----GRAGFGS 130
L GGP A G + +P + L P + +GP G G G G +GE G AG+
Sbjct: 315 LPGGPGAKGEQGPAGLPGKPGLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPG 374
Query: 131 SWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQ 190
+ G + G +G PG G G + G PG P DP P P
Sbjct: 375 AKG-ERGSPGSDGKPGYPGKPGLDGPK-----------GNPGLPGPKGDPGVGGPPGLPG 422
Query: 191 P-------GRPGRRPRQEPELRPRAQGLTG 213
P G PG P P G G
Sbjct: 423 PVGPAGAKGMPGHNGEAGPRGAPGIPGTRG 452
Score = 37.4 bits (85), Expect = 0.012
Identities = 45/157 (28%), Positives = 58/157 (36%), Gaps = 13/157 (8%)
Query: 95 VPLAPPQEGLLLRGPTGHRGGRG-RGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGP 153
+P +G+ +RG G G G G RG G S G+ G G + PG GP
Sbjct: 44 IPYTIKSKGIAVRGEQGTPGPPGPAGPRGHP----GPSGPPGKPGYGSPGLQGEPGLPGP 99
Query: 154 SGSRHLHLPVDPLHSGRPG-----APHRGRDPRWLSTPKTP--QPGRPGRRPRQEPELRP 206
G + P P G+PG P P L P+ P PG PG P +P
Sbjct: 100 PGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPGPAGISVPG-KP 158
Query: 207 RAQGLTGGQVHGELKHGYQYPGMASEGAARPADGHGA 243
QG TG PG+ + G+GA
Sbjct: 159 GQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGA 195
Score = 35.0 bits (79), Expect = 0.059
Identities = 34/113 (30%), Positives = 41/113 (36%), Gaps = 15/113 (13%)
Query: 119 GRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGR 178
G+ GE R +G +G + G G R PGP G G + +P P G GAP
Sbjct: 115 GKPGE-RGPYGPKGDVGPA--GLPGPRGPPGPPGIPGPAGISVPGKPGQQGPTGAPGPRG 171
Query: 179 DPRWLSTPKTP------------QPGRPGRRPRQEPELRPRAQGLTGGQVHGE 219
P P P PGRPG R P+ G G GE
Sbjct: 172 FPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQGPTGPSGPPGVGKRGE 224
Score = 32.0 bits (71), Expect = 0.50
Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 30/110 (27%)
Query: 106 LRGPTGHRGGRGR-GRRGE----GRAGFGSSWG-LGQSCL----GHEGGRLVPGPVGPSG 155
L GP G G +G G GE G G + G +G + G +G PGP GP+G
Sbjct: 420 LPGPVGPAGAKGMPGHNGEAGPRGAPGIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAG 479
Query: 156 --SRHLHLPVDPL-------HSGRPGAPHRGRDPRWLSTPKTPQPGRPGR 196
++ L+ P P HSG PG P P P PG PG+
Sbjct: 480 IATKGLNGPTGPPGPPGPRGHSGEPGLP----------GPPGP-PGPPGQ 518
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 42.7 bits (99), Expect = 3e-04
Identities = 52/148 (35%), Positives = 59/148 (39%), Gaps = 24/148 (16%)
Query: 78 GGPAASGVEAAETVPLQV--PLAPPQEGLLLRGPTGHRGGRGR-GRRGE-GRAGFGSSWG 133
G P A G E A P P AP G GP+G G G G RG G+ G G
Sbjct: 380 GPPGAKGQEGAHGAPGAAGNPGAPGHVGA--PGPSGPPGSVGAPGLRGTPGKDGERGEKG 437
Query: 134 LGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRD--PRWLSTPKTPQP 191
G EG PGPVGP G DP G PG P +G+D P +P P P
Sbjct: 438 AA----GEEGS---PGPVGPRG--------DPGAPGLPGPPGKGKDGEPGLRGSPGLPGP 482
Query: 192 -GRPGRRPRQEPELRPRAQGLTGGQVHG 218
G G R P ++G G V G
Sbjct: 483 LGTKGDRGAPGIPGSPGSRGDPGIGVAG 510
Score = 30.4 bits (67), Expect = 1.5
Identities = 47/160 (29%), Positives = 59/160 (36%), Gaps = 33/160 (20%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLL-------LRGPTGHRGGRGR----GRRGE-GR 125
G P A G+ A P + +P +EG L G G G GR G GE G+
Sbjct: 648 GPPGADGIAGAAGPP-GIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGK 706
Query: 126 AGF----GSSWGLGQSCL-GHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRD- 179
AG G G GH G PGP G SG+ L G+ G P + D
Sbjct: 707 AGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGL--------PGQEGLPGKDGDT 758
Query: 180 ----PRWLSTPKTP--QPGRPGRRPRQEPELRPRAQGLTG 213
P+ P+ P + G PG P P +G G
Sbjct: 759 GPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKG 798
Score = 28.5 bits (62), Expect = 5.6
Identities = 32/108 (29%), Positives = 38/108 (35%), Gaps = 12/108 (11%)
Query: 108 GPTGHRGGRGR-------GRRGEGRAGFGSSWGLGQ--SCLGHEGGRLVPGPVGPSGSRH 158
GP G RG G G+ +G G S GL G G +PG G G
Sbjct: 446 GPVGPRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGPLGTKGDRGAPGIPGSPGSRGDPG 505
Query: 159 LHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRP 206
+ + P SG PG +G P P P P P R L P
Sbjct: 506 IGVAGPPGPSGPPG--DKG-SPGSRGLPGFPGPQGPAGRDGLSSLLSP 550
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 42.7 bits (99), Expect = 3e-04
Identities = 55/175 (31%), Positives = 66/175 (37%), Gaps = 49/175 (28%)
Query: 96 PLAPPQEGLLLRGPTGHRGGRGR-GRRG-EGRAGFGSSWGL-------------GQSCLG 140
P PP RGP G RG +GR G RG +G AG S GL GQ +
Sbjct: 1046 PQGPPGS----RGPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQGRPGRPGQQGVA 1101
Query: 141 HEGGRL-------VPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQ--- 190
E G L +PGP GP G++ LP +P P P P PK P
Sbjct: 1102 GERGHLGSRGFPGIPGPSGPPGTK--GLPGEP----GPQGPQGPIGPPGEMGPKGPPGAV 1155
Query: 191 -----PGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
PG G + P P QGL G + GE PG+ + DG
Sbjct: 1156 GEPGLPGEAGMKGDLGPLGTPGEQGLIGQR--GE-------PGLEGDSGPMGPDG 1201
Score = 37.7 bits (86), Expect = 0.009
Identities = 47/144 (32%), Positives = 54/144 (37%), Gaps = 18/144 (12%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR----GRRG-EGRAGFGSSWG 133
GP E E + P PP + RGP G RG RG G G EG G G
Sbjct: 1324 GPKGEKGEQGEDGKAEGPPGPPGD----RGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPG 1379
Query: 134 LGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQ--P 191
Q GH G R PGP G G+ G+ GAP R R + L P+
Sbjct: 1380 Q-QGQPGHPGPRGWPGPKGSKGAEG-----PKGKQGKAGAPGR-RGVQGLQGLPGPRGVV 1432
Query: 192 GRPGRRPRQEPELRPRAQGLTGGQ 215
GR G P+ P G G Q
Sbjct: 1433 GRQGLEGIAGPDGLPGRDGQAGQQ 1456
Score = 35.8 bits (81), Expect = 0.035
Identities = 43/141 (30%), Positives = 56/141 (39%), Gaps = 14/141 (9%)
Query: 73 ELSLCGGPAASGV--EAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRG----EGR 125
EL L G P G+ + P+ P +GL+ G G G +G +G +G G
Sbjct: 809 ELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLM--GSVGEPGLKGDKGEQGVPGVSGD 866
Query: 126 AGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSR-HLHLPVDPLHSGRPG--APHRGRDPRW 182
GF G Q G G R PGP+G G + + P P G PG P P
Sbjct: 867 PGFQGDKG-SQGLPGFPGARGKPGPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEG 925
Query: 183 LSTPKTPQPGRPGRRPRQEPE 203
+ K G PG R + PE
Sbjct: 926 MK-GKPGARGLPGPRGQLGPE 945
Score = 35.4 bits (80), Expect = 0.045
Identities = 45/142 (31%), Positives = 59/142 (41%), Gaps = 23/142 (16%)
Query: 98 APPQEGLL-LRGPTGHRGGRGRGRRGEGRAGFGSSWGL-------GQSCLGHEGGRLVPG 149
AP + G+ L+G G RG GR +G G GL GQ G +G PG
Sbjct: 1413 APGRRGVQGLQGLPGPRGVVGR----QGLEGIAGPDGLPGRDGQAGQQ--GEQGDDGDPG 1466
Query: 150 PVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTP-QPGRPGRRPRQEPELRPRA 208
P+GP+G R +P +G PGA P + P Q G PG+R + P
Sbjct: 1467 PMGPAGKRG-----NPGVAGLPGAQ---GPPGFKGESGLPGQLGPPGKRGTEGRTGLPGN 1518
Query: 209 QGLTGGQVHGELKHGYQYPGMA 230
QG G + +PGMA
Sbjct: 1519 QGEPGSKGQPGDSGEMGFPGMA 1540
Score = 34.7 bits (78), Expect = 0.078
Identities = 38/142 (26%), Positives = 49/142 (34%), Gaps = 36/142 (25%)
Query: 77 CGGPAASGVEAAETVP-LQVPLAPPQE--GLLLRGPTGHRGGRGRGRRGEGRAGFGSSWG 133
CG P G+ +P + P PP L GP G +G +G G+A G+
Sbjct: 633 CGLPGPPGLPGLPGIPGARGPRGPPGPYGNPGLPGPPGAKGQKGDPGLSPGKAHDGAKGD 692
Query: 134 LGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGR 193
+G L PGP G G H G PG G
Sbjct: 693 MGLPGLSGN-----PGPPGRKG-----------HKGYPGPA-----------------GH 719
Query: 194 PGRRPRQEPELRPRAQGLTGGQ 215
PG + + PE P A+G G Q
Sbjct: 720 PGEQGQPGPEGSPGAKGYPGRQ 741
Score = 33.5 bits (75), Expect = 0.17
Identities = 34/109 (31%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 108 GPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSR--HLHLPVDP 165
GP G RG G GR G GL G++G + + GP+GP G + D
Sbjct: 1282 GPKGSRGSLGP-TGAPGRMGAQGEPGLA----GYDGHKGIVGPLGPPGPKGEKGEQGEDG 1336
Query: 166 LHSGRPGAP-HRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTG 213
G PG P RG + PG PG+ Q +P QG G
Sbjct: 1337 KAEGPPGPPGDRGPVGDRGDRGEPGDPGYPGQEGVQGLRGKPGQQGQPG 1385
Score = 33.1 bits (74), Expect = 0.23
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 18/72 (25%)
Query: 93 LQVPLAPP----QEGLL----LRGPTGHRGGRG-RGRRGEGRAGFGSSWGLGQSCLGHEG 143
+Q P PP +EG++ + GP+G G +G +G RG+ WGL Q G G
Sbjct: 1557 IQGPRGPPGLMGKEGIVGPLGILGPSGLPGPKGDKGSRGD--------WGL-QGPRGPPG 1607
Query: 144 GRLVPGPVGPSG 155
R PGP GP G
Sbjct: 1608 PRGRPGPPGPPG 1619
Score = 30.8 bits (68), Expect = 1.1
Identities = 34/103 (33%), Positives = 41/103 (39%), Gaps = 27/103 (26%)
Query: 108 GPTGHRGGRG----RGRRGE-GRAGFGSSWGLGQSCLGHEGGRLVPGPVG---PSGSRH- 158
GP G +G +G G GE G+ G S G G+ G + +PGPVG P GSR
Sbjct: 703 GPPGRKGHKGYPGPAGHPGEQGQPGPEGSPG----AKGYPGRQGLPGPVGDPGPKGSRGY 758
Query: 159 ------LHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPG 195
LP G PG P + K PG PG
Sbjct: 759 IGLPGLFGLPGSDGERGLPGVPGK--------RGKMGMPGFPG 793
Score = 30.8 bits (68), Expect = 1.1
Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 106 LRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVD- 164
+RGP G G +G R + G LG+ +G G PG GP GSR P
Sbjct: 1238 VRGPEGKSGKQGEKGRTGAKGAKGYQGQLGE--MGVPGDPGPPGTPGPKGSRGSLGPTGA 1295
Query: 165 PLHSGRPGAP 174
P G G P
Sbjct: 1296 PGRMGAQGEP 1305
Score = 29.6 bits (65), Expect = 2.5
Identities = 33/103 (32%), Positives = 38/103 (36%), Gaps = 19/103 (18%)
Query: 108 GPTGHRGGRGR-GRRGE-GRAGFGSSWGLG-----QSCLGHEGGRLVPGPVGPSGSRHLH 160
GP G G +G G G G GF G + G G R +PGP G G
Sbjct: 889 GPLGKVGDKGSIGFPGPPGPEGFPGDIGPPGDNGPEGMKGKPGARGLPGPRGQLGPEGDE 948
Query: 161 LPVDPLHSGRPGAPHRGRDPRWLSTPKTP-------QPGRPGR 196
P+ P PGAP P P P +PG PGR
Sbjct: 949 GPMGP-----PGAPGLEGQPGRKGFPGRPGLDGVKGEPGDPGR 986
Score = 29.6 bits (65), Expect = 2.5
Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 17/75 (22%)
Query: 148 PGPVGPSGSRHLHLPVDPLHSGR-----PGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEP 202
PGP GP GSR P GR P P + R L P PQ GRPG
Sbjct: 1044 PGPQGPPGSR--GPPGMRGAKGRRGPRGPDGPAGEQGSRGLKGPPGPQ-GRPG------- 1093
Query: 203 ELRPRAQGLTGGQVH 217
RP QG+ G + H
Sbjct: 1094 --RPGQQGVAGERGH 1106
Score = 27.7 bits (60), Expect = 9.5
Identities = 29/77 (37%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 107 RGPTGHRGGRG-RGRRGE----GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSR---H 158
+GP G G +G +G RG G+ G G+ LG G +PGP G GSR
Sbjct: 1546 KGPPGDIGFKGIQGPRGPPGLMGKEGIVGPLGI----LGPSG---LPGPKGDKGSRGDWG 1598
Query: 159 LHLPVDPL-HSGRPGAP 174
L P P GRPG P
Sbjct: 1599 LQGPRGPPGPRGRPGPP 1615
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 42.7 bits (99), Expect = 3e-04
Identities = 42/144 (29%), Positives = 58/144 (40%), Gaps = 24/144 (16%)
Query: 95 VPLAPPQEGLLLRGPTGHRGGRGR----GRRGEGRAGFGSSWGL----------GQSCLG 140
+P + GL +RGP G +G RG G +G+G G GL G G
Sbjct: 605 IPGFKGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGVPGPRGLPGPPGPMGLRGVGDTG 664
Query: 141 HEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQ 200
+G V GP GPSG R + +G+ G P P P G G + Q
Sbjct: 665 AKGEPGVRGPPGPSGPRGVGTQGPKGDTGQKGLP---------GPPGPPGYGSQGIKGEQ 715
Query: 201 EPELRPRAQGLTGGQVHGEL-KHG 223
P+ P +G G + G+ +HG
Sbjct: 716 GPQGFPGPKGTMGHGLPGQKGEHG 739
Score = 39.3 bits (90), Expect = 0.003
Identities = 49/161 (30%), Positives = 66/161 (40%), Gaps = 21/161 (13%)
Query: 79 GPAASGVEAAETVPLQV-----PLAPPQEGLL-LRGPTGHRGGRG-RGRRGEGRAGFGSS 131
GP GV+ + P + P P ++G +G G G RG G G+G+ G
Sbjct: 493 GPVGIGVQGPKGEPGSIGLPGQPGVPGEDGAAGKKGEAGLPGARGPEGPPGKGQPGPKGD 552
Query: 132 WGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP 191
G S G++G R +PGP GP G + P + PG P D P
Sbjct: 553 EGKKGS-KGNQGQRGLPGPEGPKGEPGIMGPFGMPGTSIPGPPGPKGD--------RGGP 603
Query: 192 GRPGRRPRQEPELRPRA-QGLTG--GQVHGELKHGYQYPGM 229
G PG + EP L R +G+ G G V G YPG+
Sbjct: 604 GIPGF--KGEPGLSIRGPKGVQGPRGPVGAPGLKGDGYPGV 642
Score = 37.0 bits (84), Expect = 0.016
Identities = 34/105 (32%), Positives = 45/105 (42%), Gaps = 17/105 (16%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLL-------LRGPTGHRGGRGRGRRGE-GRAG-F 128
G P G E VP + L P EG GPTG +G +G +GE G G
Sbjct: 383 GEPGQPGPRGPEGVPGERGL--PGEGFPGPKGEKGSEGPTGPQGLQGLSIKGEKGDIGPV 440
Query: 129 GSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGA 173
G +G +G +G + + GP+GP G P P G PG+
Sbjct: 441 GPQGPMGIPGIGSQGEQGIQGPIGPPG------PQGPAGQGLPGS 479
Score = 35.8 bits (81), Expect = 0.035
Identities = 39/112 (34%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 103 GLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLP 162
G + GP G +G RG G G GF GL S G +G + GPVG G + P
Sbjct: 587 GTSIPGPPGPKGDRG----GPGIPGFKGEPGL--SIRGPKGVQGPRGPVGAPGLKGDGYP 640
Query: 163 VDPLHSGRPGAPHRGRDPRWL-STPKTPQPGRPGRRPRQEPELRPRAQGLTG 213
P G PG P P L T G PG R P PR G G
Sbjct: 641 GVPGPRGLPGPP----GPMGLRGVGDTGAKGEPGVRGPPGPS-GPRGVGTQG 687
Score = 32.7 bits (73), Expect = 0.29
Identities = 43/141 (30%), Positives = 53/141 (37%), Gaps = 52/141 (36%)
Query: 107 RGPTGHRGGRG-RGRRGE-GRAGF----GSSWGLGQSC----------------LGHEGG 144
RGP G G +G +G RGE G+ G GS G G +G
Sbjct: 282 RGPGGIPGYKGDKGERGECGKPGIKGDKGSPGPYGPKGPRGIQGITGPPGDPGPKGFQGN 341
Query: 145 RLVPGPVGPSGSRHLHLPVDPLHSGRPGAP---------HRGRDPRWLSTPKTPQP---G 192
+ PGP GP GS PGAP RG++ R P P P G
Sbjct: 342 KGEPGPPGPYGS--------------PGAPGIGQQGIKGERGQEGR----PGAPGPIGVG 383
Query: 193 RPGRRPRQEPELRPRAQGLTG 213
PG+ + PE P +GL G
Sbjct: 384 EPGQPGPRGPEGVPGERGLPG 404
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 42.0 bits (97), Expect = 5e-04
Identities = 50/171 (29%), Positives = 63/171 (36%), Gaps = 10/171 (5%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS 137
GP S E+ P Q G++ GP G+ G G+ G G G G++
Sbjct: 552 GPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKN 611
Query: 138 CLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP----GR 193
G G + PGP GP G + P P G G P G P P P P G
Sbjct: 612 --GETGPQGPPGPTGPGGDKGDTGPPGP--QGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667
Query: 194 PGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPG-MASEGAARPADGHGA 243
PG + P +G G L+ G PG +GAA P GA
Sbjct: 668 PGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGA 718
Score = 40.0 bits (92), Expect = 0.002
Identities = 44/131 (33%), Positives = 55/131 (41%), Gaps = 30/131 (22%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLL----LRGPTGHRGGRG-RGRRG-EGRAGFGSSW 132
GPA E+ P P + GL ++GP G G G +G RG +GR G
Sbjct: 225 GPAGKDGESGR------PGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGET 278
Query: 133 GL----GQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAP----HRGRDPRWLS 184
G G++ L E G PGP+GP G+ P GRPG P RG D S
Sbjct: 279 GAPGLKGENGLPGENG--APGPMGPRGA--------PGERGRPGLPGAAGARGNDGARGS 328
Query: 185 TPKTPQPGRPG 195
+ PG PG
Sbjct: 329 DGQPGPPGPPG 339
Score = 39.3 bits (90), Expect = 0.003
Identities = 61/225 (27%), Positives = 73/225 (32%), Gaps = 66/225 (29%)
Query: 70 VCDELSL-CGGPAASGVEAAETVPLQVPLAP--PQEGLLLRGPTGHRGGRG-RGRRGE-- 123
+CD+ L C P E P Q P AP P G +GP G G G GR G+
Sbjct: 66 ICDDQELDCPNPEIPFGECCAVCP-QPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPG 124
Query: 124 -----GRAGFGSSWGLGQSC-------------------------LGHEGGRLVPGPVGP 153
G G G+ +SC G+ G PGP GP
Sbjct: 125 IPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGP 184
Query: 154 SG-SRHLHLPVDPLHSGRPGAPHRG-----RDPRWLSTPKTP--------QPGRPGRRPR 199
G S H P P + G PG P + P P P +PGRPG R
Sbjct: 185 PGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGL 244
Query: 200 QEPELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADGHGAE 244
P G+ G +PGM R DG E
Sbjct: 245 PGPPGIKGPAGIPG------------FPGMKGH---RGFDGRNGE 274
Score = 38.1 bits (87), Expect = 0.007
Identities = 52/167 (31%), Positives = 61/167 (36%), Gaps = 39/167 (23%)
Query: 79 GPAASGVEAAETVP---LQVPLAPPQEGLLL-RGPTGHRGGRGRGRR--------GEGRA 126
GP S E ET P P AP Q G +G G G +G G G G A
Sbjct: 792 GPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPA 851
Query: 127 GFGSSWGL--------GQSCLGHEGGRLV---------PGPVGPSGSRHLHLPVDPL-HS 168
G G+ G G G R + PGP GPSGS P P ++
Sbjct: 852 GPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNT 911
Query: 169 GRPGAPHRGRDPRWLSTPK--TPQPGRPGRRPRQEPELRPRAQGLTG 213
G PG+P +S PK QPG G Q P P G+ G
Sbjct: 912 GAPGSP-------GVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAG 951
Score = 34.3 bits (77), Expect = 0.10
Identities = 42/128 (32%), Positives = 49/128 (38%), Gaps = 24/128 (18%)
Query: 107 RGPTGHRGGRG----RGRRGE-GRAGF----------GSSWGLGQSCL----GHEGGRLV 147
+GP G RG G RG GE GR G GS G G G +G
Sbjct: 503 KGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGR 562
Query: 148 PGPVGPSGSR-HLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP-GRPGRRPRQEPELR 205
PGP GPSG R + P G GAP + + P P P G PG+ P+
Sbjct: 563 PGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGE---RGGPGGPGPQGPPGKNGETGPQGP 619
Query: 206 PRAQGLTG 213
P G G
Sbjct: 620 PGPTGPGG 627
Score = 32.7 bits (73), Expect = 0.29
Identities = 43/139 (30%), Positives = 51/139 (36%), Gaps = 21/139 (15%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-GRRGE-GRAGFGSSWGLG 135
G P G +P VP A ++G G G G G G GE G GF
Sbjct: 441 GEPGPRGERGEAGIP-GVPGAKGEDGK--DGSPGEPGANGLPGAAGERGAPGFR------ 491
Query: 136 QSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTP-QPGRP 194
G G +PG GP+G R P P G G P R P P PG P
Sbjct: 492 ----GPAGPNGIPGEKGPAGERGAPGPAGP--RGAAGEPGRDGVPGGPGMRGMPGSPGGP 545
Query: 195 GRRPRQEPELRPRAQGLTG 213
G + P P +QG +G
Sbjct: 546 GSDGKPGP---PGSQGESG 561
Score = 32.7 bits (73), Expect = 0.29
Identities = 39/132 (29%), Positives = 46/132 (34%), Gaps = 36/132 (27%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRGR-GRRG----EGRAGF---- 128
GPA + E+ P AP G GP G RG +G G RG +G GF
Sbjct: 1056 GPAGKSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNP 1115
Query: 129 ---GSSWGLGQSCL-------------------GHEGGRLVPGPVGPSGSR----HLHLP 162
GS GQ G +G PGP+GP G R
Sbjct: 1116 GAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSE 1175
Query: 163 VDPLHSGRPGAP 174
P H G+PG P
Sbjct: 1176 GSPGHPGQPGPP 1187
Score = 31.6 bits (70), Expect = 0.66
Identities = 43/144 (29%), Positives = 53/144 (36%), Gaps = 12/144 (8%)
Query: 108 GPTGHRGGRG-RGRRGE-GRAGFGSSWGL--GQSCLGHEGGRLVPGPVGPSGSRHL-HLP 162
G G GG+G G GE G G + GL G G EGG+ GP GP G+ L
Sbjct: 666 GAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQ 725
Query: 163 VDPLHSGRPGAPHRGRDPRWLSTPKTP-QPGRPGRRPRQEPELRPRAQGLTGGQVHGELK 221
P G G+P D P PG+ G R P P G G + G
Sbjct: 726 GMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGA- 784
Query: 222 HGYQYPGMASEGAARPADGHGAES 245
PG+ R + G E+
Sbjct: 785 -----PGLPGIAGPRGSPGERGET 803
Score = 30.0 bits (66), Expect = 1.9
Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 108 GPTGHRGGRGR-GRRGE-GRAGF-GSSWGLGQ----SCLGHEGGRLVPGPVGPSGSRHLH 160
GP G G G G +GE G AG GS+ GQ GH G + PGP G +GS
Sbjct: 336 GPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGK 395
Query: 161 LPVDPLHSGRPGAP 174
+ P +G PGAP
Sbjct: 396 GEMGP--AGIPGAP 407
Score = 29.6 bits (65), Expect = 2.5
Identities = 36/121 (29%), Positives = 44/121 (36%), Gaps = 30/121 (24%)
Query: 108 GPTGHRGGRGR-GRRGE-GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSR-------- 157
GP G G G+ G RGE G AG + G G R PGP GP G +
Sbjct: 1050 GPPGPVGPAGKSGDRGESGPAGPAGA-------PGPAGSRGAPGPQGPRGDKGETGERGA 1102
Query: 158 -----HLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLT 212
H P +P G PG+P + + PG G R P P G +
Sbjct: 1103 AGIKGHRGFPGNP---GAPGSPGPAGQQGAIGS-----PGPAGPRGPVGPSGPPGKDGTS 1154
Query: 213 G 213
G
Sbjct: 1155 G 1155
Score = 28.1 bits (61), Expect = 7.3
Identities = 45/140 (32%), Positives = 54/140 (38%), Gaps = 33/140 (23%)
Query: 106 LRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDP 165
L G G GG+G RGE GS G GH G GP G SG R P P
Sbjct: 1021 LPGRDGSPGGKGD--RGEN----GSPGAPGAP--GHPGPPGPVGPAGKSGDRGESGPAGP 1072
Query: 166 LHSGRPG-APHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGY 224
+G PG A RG PG G PR + +G TG + +K
Sbjct: 1073 --AGAPGPAGSRG------------APGPQG--PRGD-------KGETGERGAAGIKGHR 1109
Query: 225 QYPG-MASEGAARPADGHGA 243
+PG + G+ PA GA
Sbjct: 1110 GFPGNPGAPGSPGPAGQQGA 1129
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 42.0 bits (97), Expect = 5e-04
Identities = 44/124 (35%), Positives = 54/124 (43%), Gaps = 19/124 (15%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG----RGRRGE-GRAGFGSSWG 133
GP S + +ET L P PP GP G +G +G RG +GE G GF +S G
Sbjct: 891 GPPGSFLSNSETF-LSGPPGPP-------GPPGPKGDQGPPGPRGHQGEQGLPGFSTS-G 941
Query: 134 LGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRG--RDPRWLSTPKTPQP 191
L +G PGP GP G + P P G P P G ++S P P P
Sbjct: 942 SSSFGLNLQGPPGPPGPQGPKGDK--GDPGVPGALGIPSGPSEGGSSSTMYVSGPPGP-P 998
Query: 192 GRPG 195
G PG
Sbjct: 999 GPPG 1002
Score = 37.0 bits (84), Expect = 0.016
Identities = 48/170 (28%), Positives = 58/170 (34%), Gaps = 24/170 (14%)
Query: 76 LCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLG 135
L G P G++ P ++ + L + GP G G G G G GL
Sbjct: 789 LPGTPGRPGIKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGP-PGAPGPAGPAGLP 847
Query: 136 QSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRG-------------RDPRW 182
GH+ + GP GP G R P P G G P G +
Sbjct: 848 ----GHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGPPGPPGSFLSNSETF 903
Query: 183 LSTPKTPQPGRPGRRPRQEPELRPRA----QGLTGGQVHGELKHGYQYPG 228
LS P P PG PG + Q P PR QGL G G G G
Sbjct: 904 LSGPPGP-PGPPGPKGDQGPP-GPRGHQGEQGLPGFSTSGSSSFGLNLQG 951
Score = 35.8 bits (81), Expect = 0.035
Identities = 39/123 (31%), Positives = 45/123 (36%), Gaps = 10/123 (8%)
Query: 108 GPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHL-HLPVDPL 166
GP GH+G RG +G G G G G PG GP G + L P P
Sbjct: 746 GPDGHQGPRGE----QGLTGMPGIRGPP----GPSGDPGKPGLTGPQGPQGLPGTPGRPG 797
Query: 167 HSGRPGAPHRGRDPRWLSTPKTP-QPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQ 225
G PGAP + S P PG PG P P G G H E+ +
Sbjct: 798 IKGEPGAPGKIVTSEGSSMLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQG 857
Query: 226 YPG 228
PG
Sbjct: 858 PPG 860
Score = 32.3 bits (72), Expect = 0.39
Identities = 40/122 (32%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 101 QEGLLLRGPTGHRGGRG----RGRRG-EGRAGFGSSWGLG--QSCLGHEGGRLVPGPVGP 153
QE LRG G +G G +G RG G G G Q G +G PG GP
Sbjct: 560 QENGNLRGSPGPKGDMGSPGPKGDRGFPGTPGIPGPLGHPGPQGPKGQKGSVGDPGMEGP 619
Query: 154 SGSRHLHLPVDPL-HSGRPGAPHRG-RDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGL 211
G R P+ P +G PG+ +G R P P PG PG + P QG
Sbjct: 620 MGQRGREGPMGPRGEAGPPGSGEKGERGAAGEPGPHGP-PGVPGSVGPKGSSGSPGPQGP 678
Query: 212 TG 213
G
Sbjct: 679 PG 680
Score = 31.6 bits (70), Expect = 0.66
Identities = 40/128 (31%), Positives = 46/128 (35%), Gaps = 5/128 (3%)
Query: 73 ELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-GRRGEGRAGFGSS 131
E L G P G P + L PQ L G G G +G G G+ GSS
Sbjct: 756 EQGLTGMPGIRGPPGPSGDPGKPGLTGPQGPQGLPGTPGRPGIKGEPGAPGKIVTSEGSS 815
Query: 132 WGLGQSCLGHEGGRLVPGPVG---PSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKT 188
G G PGP G P+G L + L+ P P R P S P
Sbjct: 816 MLTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPGPPGPRGPPGPSIPGP 875
Query: 189 PQP-GRPG 195
P P G PG
Sbjct: 876 PGPRGPPG 883
Score = 31.6 bits (70), Expect = 0.66
Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 7/86 (8%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE----GRAGF--GS 130
G P G + + +P GL L+GP G G +G +G +G+ G G G
Sbjct: 921 GPPGPRGHQGEQGLPGFSTSGSSSFGLNLQGPPGPPGPQGPKGDKGDPGVPGALGIPSGP 980
Query: 131 SWGLGQSCLGHEGGRLVPGPVGPSGS 156
S G S + G PGP GP GS
Sbjct: 981 SEGGSSSTMYVSGPPGPPGPPGPPGS 1006
Score = 30.0 bits (66), Expect = 1.9
Identities = 48/151 (31%), Positives = 56/151 (37%), Gaps = 31/151 (20%)
Query: 106 LRGPTGHRGGRG-RGRRGE-GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPV 163
+ GP G RG G G RGE G G G G G PGP GP G + V
Sbjct: 616 MEGPMGQRGREGPMGPRGEAGPPGSGEK--------GERGAAGEPGPHGPPG---VPGSV 664
Query: 164 DPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEP-----------ELRPRAQGLT 212
P S P P L + + G PG + + P E PR GLT
Sbjct: 665 GPKGSSGSPGPQGPPGPVGLQGLR-GEVGLPGVKGDKGPMGPPGPKGDQGEKGPR--GLT 721
Query: 213 GGQVHGELKHGYQYPGMASEGAARPA--DGH 241
G L PG ++GA PA DGH
Sbjct: 722 GEPGMRGLPGAVGEPG--AKGAMGPAGPDGH 750
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 42.0 bits (97), Expect = 5e-04
Identities = 44/120 (36%), Positives = 49/120 (40%), Gaps = 23/120 (19%)
Query: 78 GGPAASGVEAAETVPLQV--PLAPPQEGLLLRGPTGHRGGRGR-GRRGE-GRAGFGSSWG 133
G P A G E A P P AP G GP+G G G G RG G+ G G
Sbjct: 898 GPPGAKGQEGAHGAPGAAGNPGAPGHVGA--PGPSGPPGSVGAPGLRGTPGKDGERGEKG 955
Query: 134 LGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRD--PRWLSTPKTPQP 191
G EG PGPVGP G DP G PG P +G+D P +P P P
Sbjct: 956 AA----GEEGS---PGPVGPRG--------DPGAPGLPGPPGKGKDGEPGLRGSPGLPGP 1000
Score = 38.5 bits (88), Expect = 0.005
Identities = 55/174 (31%), Positives = 63/174 (36%), Gaps = 38/174 (21%)
Query: 78 GGPAASGVEAAETVPLQV-PLAPP--------QEGLL----LRGPTGHRGGRGR-GRRG- 122
G P SGV + V P PP QEGL GP GH+G G G RG
Sbjct: 620 GRPGPSGVAGPQGEKGDVGPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGP 679
Query: 123 ---EGRAG-------FGSSWGLGQSCL-------GHEGGRLVPGPVGPSGSRHLHLPVDP 165
EGR G G +G + G G VPGP GP GS LP +
Sbjct: 680 IGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGGSP--GLPGEI 737
Query: 166 LHSGRPGAPHRGRDPRWLSTPKTPQP----GRPGRRPRQEPELRPRAQGLTGGQ 215
G+PG P P P P G PG R +P +G G Q
Sbjct: 738 GFPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQ 791
Score = 37.0 bits (84), Expect = 0.016
Identities = 42/141 (29%), Positives = 52/141 (36%), Gaps = 30/141 (21%)
Query: 77 CGGPAASGVEAAETVPLQVPLAPPQEGLL----LRGPTGHRGGRGRGRRGEGRAGFGSSW 132
C PA E P+ +P G + GP G +G G G G+G G S
Sbjct: 476 CSCPAGEKGEMGVAGPMGLPGPKGDIGAIGPVGAPGPKGEKGDVGIGPFGQGEKGEKGSL 535
Query: 133 GLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPG 192
GL PGP G GS+ + +P G PG P + P+ P PG
Sbjct: 536 GL-------------PGPPGRDGSKGMR--GEPGELGEPGLP----GEVGMRGPQGP-PG 575
Query: 193 RPGRRPRQEPELRPRAQGLTG 213
PG P R A GL G
Sbjct: 576 LPG------PPGRVGAPGLQG 590
Score = 30.4 bits (67), Expect = 1.5
Identities = 47/160 (29%), Positives = 59/160 (36%), Gaps = 33/160 (20%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLL-------LRGPTGHRGGRGR----GRRGE-GR 125
G P A G+ A P + +P +EG L G G G GR G GE G+
Sbjct: 1201 GPPGADGIAGAAGPP-GIQGSPGKEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEPGK 1259
Query: 126 AGF----GSSWGLGQSCL-GHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRD- 179
AG G G GH G PGP G SG+ L G+ G P + D
Sbjct: 1260 AGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGL--------PGQEGLPGKDGDT 1311
Query: 180 ----PRWLSTPKTP--QPGRPGRRPRQEPELRPRAQGLTG 213
P+ P+ P + G PG P P +G G
Sbjct: 1312 GPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKG 1351
Score = 29.6 bits (65), Expect = 2.5
Identities = 33/108 (30%), Positives = 41/108 (37%), Gaps = 16/108 (14%)
Query: 106 LRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCL-GHEGGRLVPGPVGPSGSRHLHLPVD 164
L GP G + G+ R E A LG C+ G G +PG G G + +
Sbjct: 997 LPGPLGTKAACGKVRGSENCA-------LGGQCVKGDRGAPGIPGSPGSRGDPGIGVAGP 1049
Query: 165 PLHSGRPG--APHRGRDPRWLSTPKTP-----QPGRPGRR-PRQEPEL 204
P SG PG R P+ P PG PG R P +P L
Sbjct: 1050 PGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGAPGNPGERGPPGKPGL 1097
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 41.6 bits (96), Expect = 6e-04
Identities = 44/125 (35%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
Query: 92 PLQVPLAPPQEGLL-LRGPTGHRGGRGR-GRRGEGRAGFGSSWGLGQSCLGHEGGRLVPG 149
P +P P ++G L G G G G GR+GE + G+S G+ G +G R PG
Sbjct: 1825 PPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGE-KGDSGASGREGRD--GPKGERGAPG 1881
Query: 150 PVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRW--LSTPKTPQPGRPGRRP-RQEPELRP 206
+GP G L PV P G PG P G P+ T + G PG R R EP P
Sbjct: 1882 ILGPQGPPGLPGPVGPPGQGFPGVP-GGTGPKGDRGETGSKGEQGLPGERGLRGEPGSVP 1940
Query: 207 RAQGL 211
L
Sbjct: 1941 NVDRL 1945
Score = 41.2 bits (95), Expect = 8e-04
Identities = 48/163 (29%), Positives = 63/163 (38%), Gaps = 37/163 (22%)
Query: 76 LCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG----RGRRG-EGRAG--- 127
L G P G+E P PQ +RGP G +G RG GR G +G+ G
Sbjct: 1738 LPGAPGERGIEGFRGPP------GPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAG 1791
Query: 128 -------FGSSWGLGQSCL-GHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRD 179
G + G+ L G G + +PGP GP G LP P G+PG + +
Sbjct: 1792 PSGPNGAAGKAGDPGRDGLPGLRGEQGLPGPSGPPG-----LPGKPGEDGKPGLNGKNGE 1846
Query: 180 PRWLSTP-------KTPQPGRPGRRPRQEPELRPRAQGLTGGQ 215
P P + G GR R P+ A G+ G Q
Sbjct: 1847 P---GDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQ 1886
Score = 40.0 bits (92), Expect = 0.002
Identities = 48/147 (32%), Positives = 58/147 (39%), Gaps = 29/147 (19%)
Query: 78 GGPAASGVEAAETVP-LQVPLAPPQEGLLLRGPTGHRGGRG-------RGRRG-EGRAGF 128
G P G+ E P LQ P PP GP G G G G G +G +G
Sbjct: 2153 GLPGERGMAGPEGKPGLQGPRGPP-------GPVGGHGDPGPPGAPGLAGPAGPQGPSGL 2205
Query: 129 ----GSSWGLGQSCLGHEGGRLVPGPVGPSG----SRHLHLPVDPLHSGRPGAPHR---- 176
G + G+ G G +PGP GPSG LP +G+PGAP R
Sbjct: 2206 KGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGETGKPGAPGRDGAS 2265
Query: 177 GRDPRWLSTPKTPQPGRPGR-RPRQEP 202
G+D S PG PG P+ EP
Sbjct: 2266 GKDGDRGSPGVPGSPGLPGPVGPKGEP 2292
Score = 37.4 bits (85), Expect = 0.012
Identities = 44/151 (29%), Positives = 56/151 (37%), Gaps = 30/151 (19%)
Query: 106 LRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDP 165
+RGP G +G +G GSS G +G R PGP GP G
Sbjct: 1665 VRGPVGEKGDQGDPGEDGRNGSPGSS--------GPKGDRGEPGPPGPPGR--------- 1707
Query: 166 LHSGRPGAPHRGR-DPRWLSTPKTPQ-----PGRPGRRPRQEPELRPRAQGLTGGQVHGE 219
L PGA +G R P+ P+ PG PG R + P QG G +
Sbjct: 1708 LVDTGPGAREKGEPGDRGQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAG 1767
Query: 220 LKHGYQYPGM-------ASEGAARPADGHGA 243
K PG+ GAA P+ +GA
Sbjct: 1768 EKGDRGPPGLDGRSGLDGKPGAAGPSGPNGA 1798
Score = 36.6 bits (83), Expect = 0.020
Identities = 41/148 (27%), Positives = 57/148 (38%), Gaps = 16/148 (10%)
Query: 79 GPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSC 138
GP G+ E +P +P +G + GP G +G +G +G G G
Sbjct: 1412 GPGEGGIAPGEPGLPGLPGSPGPQGPV--GPPGKKGEKGDSE--DGAPGLPGQPGSP--- 1464
Query: 139 LGHEGGRLVPGPVGPSGSRHLHLPV----DPLHSGRPGAPHRGRDPRWLSTP--KTPQ-- 190
G +G R PG +GP G R P+ + G PG P P K P+
Sbjct: 1465 -GEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGPEGP 1523
Query: 191 PGRPGRRPRQEPELRPRAQGLTGGQVHG 218
PG GR+ + RP + G V G
Sbjct: 1524 PGPTGRQGEKGEPGRPGDPAVVGPAVAG 1551
Score = 36.2 bits (82), Expect = 0.027
Identities = 39/111 (35%), Positives = 47/111 (42%), Gaps = 16/111 (14%)
Query: 118 RGRRGE-GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVD-PLHSGRPGAPH 175
+G++GE G G G G G PGP GP GS P GRPG+P
Sbjct: 1253 KGQKGEPGEMGLRGQVG-PPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPG 1311
Query: 176 RGRDPRWLSTPKTP----QPGRPGRRPRQEPELR----PRAQGLTGGQVHG 218
R +P TP P PG PG PR +P R P+ + GQV G
Sbjct: 1312 RAGNP---GTPGAPGLKGSPGLPG--PRGDPGERGPRGPKGEPGAPGQVIG 1357
Score = 33.5 bits (75), Expect = 0.17
Identities = 40/111 (36%), Positives = 43/111 (38%), Gaps = 6/111 (5%)
Query: 106 LRGPTGHRGGRG-RGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVD 164
L GP G G RG RG +GE A G G G +G GP GP G P
Sbjct: 1330 LPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRG 1389
Query: 165 PLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQ 215
P G PG +G D P PG G P EP L P G G Q
Sbjct: 1390 P--PGLPGTAMKG-DKGDRGERGPPGPGEGGIAP-GEPGL-PGLPGSPGPQ 1435
Score = 33.5 bits (75), Expect = 0.17
Identities = 37/117 (31%), Positives = 45/117 (38%), Gaps = 19/117 (16%)
Query: 106 LRGPTGHRGGRG----RGRRGE-GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLH 160
L G G +G RG RG +GE GRAG G +G + PGP G G +
Sbjct: 2322 LVGEPGAKGDRGLPGPRGEKGEAGRAGEPGD-------PGEDGQKGAPGPKGFKGDPGVG 2374
Query: 161 LPVDPLHSGRPGAPHRGRDPRWLSTPKTPQ----PGRPGRRPRQEPELRPRAQGLTG 213
+P P G PG P D P P PG+ G R +GL G
Sbjct: 2375 VPGSP---GPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAG 2428
Score = 33.1 bits (74), Expect = 0.23
Identities = 42/147 (28%), Positives = 50/147 (34%), Gaps = 17/147 (11%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSG--------SRH 158
RGP G G +G + EG GF GL +G R PGP GP G
Sbjct: 1978 RGPKGDSGEQGPPGK-EGPIGFPGERGL-------KGDRGDPGPQGPPGLALGERGPPGP 2029
Query: 159 LHLPVDPLHSGRPGAPHRGRDPRWLSTP-KTPQPGRPGRRPRQEPELRPRAQGLTGGQVH 217
L +P G PG P R P + + G G R Q + P G G
Sbjct: 2030 SGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGP 2089
Query: 218 GELKHGYQYPGMASEGAARPADGHGAE 244
K PG G P GA+
Sbjct: 2090 PGPKVSVDEPGPGLSGEQGPPGLKGAK 2116
Score = 33.1 bits (74), Expect = 0.23
Identities = 57/193 (29%), Positives = 65/193 (33%), Gaps = 44/193 (22%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGEGRAGFGSSWGLGQ 136
G P SG+ P L G+ G G RG RG +G RGE Q
Sbjct: 2025 GPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGE------------Q 2072
Query: 137 SCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAP-------------------HRG 177
G G PGP GP G + P SG G P RG
Sbjct: 2073 GRDGPPGLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRG 2132
Query: 178 ----RDPRWLSTPKTPQ--PGRPGRRPRQEPELRPRAQGLTG--GQVHGELKHGYQYPGM 229
+ R P+ PG PG R PE +P QG G G V G HG P
Sbjct: 2133 VPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGG---HGDPGP-P 2188
Query: 230 ASEGAARPADGHG 242
+ G A PA G
Sbjct: 2189 GAPGLAGPAGPQG 2201
Score = 30.0 bits (66), Expect = 1.9
Identities = 41/130 (31%), Positives = 49/130 (37%), Gaps = 31/130 (23%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-GRRGEGRAGFGSSWGLGQ 136
G P GV+ +P +P AP G G TG RG G+ G GE +
Sbjct: 2380 GPPGPPGVKGDLGLP-GLPGAPGVVGF--PGQTGPRGEMGQPGPSGE------------R 2424
Query: 137 SCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPG- 195
G G +PGP+GP G P G PGA D P G PG
Sbjct: 2425 GLAGPPGREGIPGPLGPPG--------PPGSVGPPGASGLKGD------KGDPGVGLPGP 2470
Query: 196 RRPRQEPELR 205
R R EP +R
Sbjct: 2471 RGERGEPGIR 2480
Score = 29.6 bits (65), Expect = 2.5
Identities = 28/60 (46%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 99 PPQEGLLLRGPTGHRGGRG-RGRRG-EGRAGF-GSSWGLGQSCLGHEGGRLVPGPVGPSG 155
PP GL+L G G +G G RG G GRAG G S G+ G G PGPVGP G
Sbjct: 1576 PP--GLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEK--GDPGRPGPPGPVGPRG 1631
Score = 28.9 bits (63), Expect = 4.3
Identities = 42/145 (28%), Positives = 50/145 (34%), Gaps = 27/145 (18%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR----GRRGE-GRAGF 128
+ L G P SG+ P P P Q G TG G GR G+ G+ G G
Sbjct: 2226 VGLPGPPGPSGLVG----PQGSPGLPGQVG-----ETGKPGAPGRDGASGKDGDRGSPGV 2276
Query: 129 GSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKT 188
S GL G G + PGP G G + LP G PG L+
Sbjct: 2277 PGSPGLP----GPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGG---------LAGDLV 2323
Query: 189 PQPGRPGRRPRQEPELRPRAQGLTG 213
+PG G R P G G
Sbjct: 2324 GEPGAKGDRGLPGPRGEKGEAGRAG 2348
Score = 28.5 bits (62), Expect = 5.6
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 107 RGPTGHRGGRG-RGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSR 157
RGP G +G +G RG GE G G G G + PGP GP G +
Sbjct: 2733 RGPEGLQGQKGERGPPGERVVGAPGVPGAP----GERGEQGRPGPAGPRGEK 2780
Score = 27.7 bits (60), Expect = 9.5
Identities = 26/81 (32%), Positives = 31/81 (38%), Gaps = 26/81 (32%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGEGRAGFGSSWGLGQ 136
G P ASG++ + P G+ L GP G RG G RG G
Sbjct: 2449 GPPGASGLKGDKGDP----------GVGLPGPRGERGEPGIRGEDGRP------------ 2486
Query: 137 SCLGHEGGRLVPGPVGPSGSR 157
G EG R + GP G G R
Sbjct: 2487 ---GQEGPRGLTGPPGSRGER 2504
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 40.8 bits (94), Expect = 0.001
Identities = 38/112 (33%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 97 LAPPQEGLLLRG---PTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGP 153
L+P QE RG P+ G RG+ G+ + G GS P P
Sbjct: 101 LSPHQE----RGRSKPSPPVSGTRRGKTGQWKEGRGS--------------HPTPEPQRL 142
Query: 154 SGSRHLHLPVDPLHSGRPGAPHR-GRDPRWLSTPKTPQPGR-PGRRPRQEPE 203
+ R LH P +P GR AP R G P+ P PGR GR PR +PE
Sbjct: 143 AARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQPE 194
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 40.8 bits (94), Expect = 0.001
Identities = 38/112 (33%), Positives = 47/112 (41%), Gaps = 23/112 (20%)
Query: 97 LAPPQEGLLLRG---PTGHRGGRGRGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGP 153
L+P QE RG P+ G RG+ G+ + G GS P P
Sbjct: 101 LSPHQE----RGRSKPSPPVSGTRRGKTGQWKEGRGS--------------HPTPEPQRL 142
Query: 154 SGSRHLHLPVDPLHSGRPGAPHR-GRDPRWLSTPKTPQPGR-PGRRPRQEPE 203
+ R LH P +P GR AP R G P+ P PGR GR PR +PE
Sbjct: 143 AARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQPE 194
>gi|18641360 collectin sub-family member 12 [Homo sapiens]
Length = 742
Score = 40.8 bits (94), Expect = 0.001
Identities = 41/126 (32%), Positives = 53/126 (42%), Gaps = 31/126 (24%)
Query: 105 LLRGPTGHRGGRG-RGRRGEGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPV 163
+L+GP G RG RG RG +G G + GQ +G + PGP GP+G R P+
Sbjct: 440 ILQGPPGPRGPRGDRGSQGPP----GPTGNKGQ-----KGEKGEPGPPGPAGERG---PI 487
Query: 164 DPLHSGRPG-----------APHRGRDPRWLSTPKTPQ-----PGRPGRRPRQEPELRPR 207
P +G PG P R P+ P PG PG+ P+ P
Sbjct: 488 GP--AGPPGERGGKGSKGSQGPKGSRGSPGKPGPQGPSGDPGPPGPPGKEGLPGPQGPPG 545
Query: 208 AQGLTG 213
QGL G
Sbjct: 546 FQGLQG 551
Score = 29.6 bits (65), Expect = 2.5
Identities = 35/107 (32%), Positives = 44/107 (41%), Gaps = 9/107 (8%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE-GRAGFGSSWGLG 135
G P G + P P P +EGL GP G G +G +G GE G G GL
Sbjct: 512 GSPGKPGPQGPSGDP-GPPGPPGKEGL--PGPQGPPGFQGLQGTVGEPGVPGPRGLPGL- 567
Query: 136 QSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRW 182
G G + PGP GPSG+ +P+ + P G P W
Sbjct: 568 PGVPGMPGPKGPPGPPGPSGA---VVPLALQNEPTPAPEDNGCPPHW 611
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/126 (32%), Positives = 52/126 (41%), Gaps = 29/126 (23%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQ 136
G P SG +T P + P + G+ GP G RGG G + EG AG
Sbjct: 744 GSPGPSGTPG-DTGPPGLQGMPGERGIAGTPGPKGDRGGIGE-KGAEGTAG--------- 792
Query: 137 SCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGR 196
++G R +PGP+GP G P P +G G P PR L P + G PG
Sbjct: 793 ----NDGARGLPGPLGPPG------PAGP--TGEKGEP----GPRGLVGPPGSR-GNPGS 835
Query: 197 RPRQEP 202
R P
Sbjct: 836 RGENGP 841
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/118 (35%), Positives = 49/118 (41%), Gaps = 25/118 (21%)
Query: 96 PLAPPQEGLL--LRGPTGHRGGRG----RGRRGE-GRAGFGSSWGL-----------GQS 137
P+ PP L GP G RG +G RG RG+ G GF GL
Sbjct: 1108 PIGPPGRAGKRGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAG 1167
Query: 138 CLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPG 195
G G R PGPVGPSG P+ P+ G PG R + P+ P PG PG
Sbjct: 1168 IPGPFGPRGPPGPVGPSGKEGNPGPLGPI--GPPGV----RGSVGEAGPEGP-PGEPG 1218
Score = 37.4 bits (85), Expect = 0.012
Identities = 41/128 (32%), Positives = 49/128 (38%), Gaps = 18/128 (14%)
Query: 70 VCDELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFG 129
VCD G +E + + P+ PP E + T G G G GR G
Sbjct: 63 VCDN----GAILCDKIECQDVLDCADPVTPPGECCPVCSQTP---GGGNTNFGRGRKGQK 115
Query: 130 SSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWL-STPKT 188
GL G G PGP GP GS+ P GRPG R P+ + P
Sbjct: 116 GEPGLVPVVTGIRGR---PGPAGPPGSQGPRGERGP--KGRPGP----RGPQGIDGEPGV 166
Query: 189 P-QPGRPG 195
P QPG PG
Sbjct: 167 PGQPGAPG 174
Score = 37.4 bits (85), Expect = 0.012
Identities = 49/134 (36%), Positives = 56/134 (41%), Gaps = 38/134 (28%)
Query: 108 GPTGHRGGRG-RGRRGE-GRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLP-VD 164
GP G G +G RG+ G+ G GF G G G + GP+GP G P D
Sbjct: 453 GPQGSTGPQGIRGQPGDPGVPGFKGEAGPK----GEPGPHGIQGPIGPPGEEGKRGPRGD 508
Query: 165 PLHSGRP------GAP-HRG----------------RDPRWLSTPKTPQ--PGRPGRRPR 199
P G P GAP +RG R P S PK Q PGRPG
Sbjct: 509 PGTVGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPG---- 564
Query: 200 QEPELRPRAQGLTG 213
EP L P A+GLTG
Sbjct: 565 -EPGL-PGARGLTG 576
Score = 35.4 bits (80), Expect = 0.045
Identities = 54/175 (30%), Positives = 63/175 (36%), Gaps = 50/175 (28%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG----RGRRGE-GRAGF---- 128
GGP G + P P PP GP G G RG G+RGE G G
Sbjct: 963 GGPGDKGDPGEDGQP--GPDGPP-------GPAGTTGQRGIVGMPGQRGERGMPGLPGPA 1013
Query: 129 GSSWGLGQSCLGHEGGRLVPGPVGPSGSR-HLHLPVDPLHSGRPGAPHRGRD-------- 179
G+ +G + G G + PGPVGP GS + P +G G P GRD
Sbjct: 1014 GTPGKVGPT--GATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP--GRDGAVGERGD 1069
Query: 180 ---------PRWLSTPKTPQP----------GRPGRRPRQEPELRPRAQGLTGGQ 215
P P TP P G PG R P R +GL G Q
Sbjct: 1070 RGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGKRGLPGPQ 1124
Score = 35.0 bits (79), Expect = 0.059
Identities = 39/129 (30%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 72 DELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGEGRAGFGS 130
D LS +G++ + QV L P G P G RG +G +G++G
Sbjct: 185 DGLSRPFSAQMAGLDEKSGLGSQVGLMPGSVG-----PVGPRGPQGLQGQQG-------- 231
Query: 131 SWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQ 190
G G G PGP+GP GSR P P G G P R +P + +P
Sbjct: 232 ----GAGPTGPPGEPGDPGPMGPIGSRGPEGP--PGKPGEDGEPGRNGNPGEVGFAGSPG 285
Query: 191 ----PGRPG 195
PG PG
Sbjct: 286 ARGFPGAPG 294
Score = 35.0 bits (79), Expect = 0.059
Identities = 52/185 (28%), Positives = 64/185 (34%), Gaps = 19/185 (10%)
Query: 73 ELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSW 132
E+ G P A G A +P L + L GP G G G G+
Sbjct: 277 EVGFAGSPGARGFPGAPGLP---GLKGHRGHKGLEGPKGEVGAPGSKGEAGPTGPMGAMG 333
Query: 133 GLGQSCLGHEGGRLVPGPVGPSGSRHLH------LPVDPL----HSGRPGAPHRGRD--P 180
LG + E GRL GP G G R H P+ PL SG PG P + P
Sbjct: 334 PLGPRGMPGERGRL--GPQGAPGQRGAHGMPGKPGPMGPLGIPGSSGFPGNPGMKGEAGP 391
Query: 181 RWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKHGYQYPGMAS-EGAARPAD 239
P+ PQ G+ G P P G G K PG + G+A P
Sbjct: 392 TGARGPEGPQ-GQRGETGPPGPVGSPGLPGAIGTDGTPGAKGPTGSPGTSGPPGSAGPPG 450
Query: 240 GHGAE 244
G +
Sbjct: 451 SPGPQ 455
Score = 34.3 bits (77), Expect = 0.10
Identities = 46/163 (28%), Positives = 59/163 (36%), Gaps = 35/163 (21%)
Query: 79 GP-AASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR----------GRRGE-GRA 126
GP A G + P + + + L GP G G G+ G+RG G+
Sbjct: 588 GPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPGKD 647
Query: 127 G-FGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLST 185
G G S +G L E G GP GP+G + L G PG P G P
Sbjct: 648 GEVGPSGPVGPPGLAGERGE--QGPPGPTGFQGL--------PGPPGPPGEGGKPGDQGV 697
Query: 186 PKTP----------QPGRPGRRPRQEPELRPRAQGLTGGQVHG 218
P P + G PG R P +G+ GG HG
Sbjct: 698 PGDPGAVGPLGPRGERGNPGERGEPGITGLPGEKGMAGG--HG 738
Score = 32.0 bits (71), Expect = 0.50
Identities = 54/175 (30%), Positives = 64/175 (36%), Gaps = 45/175 (25%)
Query: 78 GGPAASGVEAAETVPLQVPLAPP-------------QEGLLLRGPTGHRGGRG-RGRRGE 123
G +G + A +P PL PP GL+ GP G RG G RG G
Sbjct: 786 GAEGTAGNDGARGLP--GPLGPPGPAGPTGEKGEPGPRGLV--GPPGSRGNPGSRGENGP 841
Query: 124 -GRAGFGSSWGL-GQSCL-------GHEGGRLVPGPVGPSGSRHLHLP--VDPLHSGR-- 170
G GF G GQ + G +G PGP G +GS H P V L GR
Sbjct: 842 TGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQGLAGSPGPHGPNGVPGLKGGRGT 901
Query: 171 ---------PGAPHRGRDPRWLSTPKTPQP-GRPGRRPRQEPELR--PRAQGLTG 213
PG+ R P P P G PG+ P LR P + G G
Sbjct: 902 QGPPGATGFPGSAGRVGPPGPAGAPGPAGPLGEPGK--EGPPGLRGDPGSHGRVG 954
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 35/142 (24%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRG-RGRRGEGRAGFGSS 131
L+L G P G + P P P Q+G + L GP GH G +G RG+ G+
Sbjct: 409 LALMGPPGLPG----QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGD-------- 456
Query: 132 WGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP 191
+G G + PG GP G + +G PG+P + +P P
Sbjct: 457 -------MGPPGPQGPPGKDGPPGVKG--------ENGHPGSPGEKGEKGETGQAGSPVP 501
Query: 192 GRPGRRPRQEPELRPRAQGLTG 213
G PG PE P GL G
Sbjct: 502 GLPG------PEGPPGPPGLQG 517
Score = 30.0 bits (66), Expect = 1.9
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 73 ELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-------GRRGEGR 125
E + G P G + A + + P + G G +G G G++GE +
Sbjct: 268 ERGMPGMPGKHGAKGAPGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKGE-K 322
Query: 126 AGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPG 172
G+S G G+ G G +PGP GP G + V P G+PG
Sbjct: 323 GDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGP--PGQPG 364
Score = 29.3 bits (64), Expect = 3.3
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 86 EAAETVP-LQVPLAPPQEGLL--LRGPTGHRGGRG-RGRRG-EGRAGFGSSWGLGQSCLG 140
+A VP L P PP L + GP G G G +G +G +G G GL G
Sbjct: 495 QAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLP----G 550
Query: 141 HEGGRLVPGPVGPSGSR 157
G VPGP GP G R
Sbjct: 551 TPGPIGVPGPAGPKGER 567
Score = 28.5 bits (62), Expect = 5.6
Identities = 46/159 (28%), Positives = 58/159 (36%), Gaps = 24/159 (15%)
Query: 100 PQEGLLLRGPTGHRGGRG-RGRRGEGR------------AGFGSSWGLG----QSCLGHE 142
P+ + L GP G G +G +G +G+ A SS + QS +
Sbjct: 159 PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQASIQ 218
Query: 143 GGRLVPGPVGPSGS-RHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQE 201
G PGP GPSG H LP G PG P DP GR G R
Sbjct: 219 GPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQG-----YHGRKGERGMPG 273
Query: 202 PELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
+ A+G G V G +K PG E A + G
Sbjct: 274 MPGKHGAKGAPGIAVAG-MKGEPGIPGTKGEKGAEGSPG 311
Score = 28.5 bits (62), Expect = 5.6
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS--CLGHEGGRLVPGPVGPSGSRHLHLPVD 164
+GP G +G +G +GE G+ Q L G +PG +GP G+ +P
Sbjct: 375 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAP--GIPGQ 432
Query: 165 PLHSGRPGAP-HRG-RDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKH 222
G PG P H G + PR G+PG P+ P G G V GE H
Sbjct: 433 KGEIGLPGPPGHDGEKGPR----------GKPGDMGPPGPQGPPGKDGPPG--VKGENGH 480
Query: 223 GYQYPGMASEGAARPADG 240
PG E + G
Sbjct: 481 ----PGSPGEKGEKGETG 494
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 35/142 (24%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRG-RGRRGEGRAGFGSS 131
L+L G P G + P P P Q+G + L GP GH G +G RG+ G+
Sbjct: 438 LALMGPPGLPG----QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGD-------- 485
Query: 132 WGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP 191
+G G + PG GP G + +G PG+P + +P P
Sbjct: 486 -------MGPPGPQGPPGKDGPPGVKG--------ENGHPGSPGEKGEKGETGQAGSPVP 530
Query: 192 GRPGRRPRQEPELRPRAQGLTG 213
G PG PE P GL G
Sbjct: 531 GLPG------PEGPPGPPGLQG 546
Score = 30.0 bits (66), Expect = 1.9
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 73 ELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-------GRRGEGR 125
E + G P G + A + + P + G G +G G G++GE +
Sbjct: 297 ERGMPGMPGKHGAKGAPGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKGE-K 351
Query: 126 AGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPG 172
G+S G G+ G G +PGP GP G + V P G+PG
Sbjct: 352 GDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGP--PGQPG 393
Score = 29.3 bits (64), Expect = 3.3
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 86 EAAETVP-LQVPLAPPQEGLL--LRGPTGHRGGRG-RGRRG-EGRAGFGSSWGLGQSCLG 140
+A VP L P PP L + GP G G G +G +G +G G GL G
Sbjct: 524 QAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLP----G 579
Query: 141 HEGGRLVPGPVGPSGSR 157
G VPGP GP G R
Sbjct: 580 TPGPIGVPGPAGPKGER 596
Score = 28.5 bits (62), Expect = 5.6
Identities = 46/159 (28%), Positives = 58/159 (36%), Gaps = 24/159 (15%)
Query: 100 PQEGLLLRGPTGHRGGRG-RGRRGEGR------------AGFGSSWGLG----QSCLGHE 142
P+ + L GP G G +G +G +G+ A SS + QS +
Sbjct: 188 PKGDMGLTGPPGQPGPQGQKGEKGQCGEYPHRECLSSMPAALRSSQIIALKGEQSQASIQ 247
Query: 143 GGRLVPGPVGPSGS-RHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQE 201
G PGP GPSG H LP G PG P DP GR G R
Sbjct: 248 GPPGPPGPPGPSGPLGHPGLPGPMGPPGLPGPPGPKGDPGIQG-----YHGRKGERGMPG 302
Query: 202 PELRPRAQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
+ A+G G V G +K PG E A + G
Sbjct: 303 MPGKHGAKGAPGIAVAG-MKGEPGIPGTKGEKGAEGSPG 340
Score = 28.5 bits (62), Expect = 5.6
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS--CLGHEGGRLVPGPVGPSGSRHLHLPVD 164
+GP G +G +G +GE G+ Q L G +PG +GP G+ +P
Sbjct: 404 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAP--GIPGQ 461
Query: 165 PLHSGRPGAP-HRG-RDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKH 222
G PG P H G + PR G+PG P+ P G G V GE H
Sbjct: 462 KGEIGLPGPPGHDGEKGPR----------GKPGDMGPPGPQGPPGKDGPPG--VKGENGH 509
Query: 223 GYQYPGMASEGAARPADG 240
PG E + G
Sbjct: 510 ----PGSPGEKGEKGETG 523
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 35/142 (24%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRG-RGRRGEGRAGFGSS 131
L+L G P G + P P P Q+G + L GP GH G +G RG+ G+
Sbjct: 460 LALMGPPGLPG----QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGD-------- 507
Query: 132 WGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP 191
+G G + PG GP G + +G PG+P + +P P
Sbjct: 508 -------MGPPGPQGPPGKDGPPGVKG--------ENGHPGSPGEKGEKGETGQAGSPVP 552
Query: 192 GRPGRRPRQEPELRPRAQGLTG 213
G PG PE P GL G
Sbjct: 553 GLPG------PEGPPGPPGLQG 568
Score = 30.0 bits (66), Expect = 1.9
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 73 ELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-------GRRGEGR 125
E + G P G + A + + P + G G +G G G++GE +
Sbjct: 319 ERGMPGMPGKHGAKGAPGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKGE-K 373
Query: 126 AGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPG 172
G+S G G+ G G +PGP GP G + V P G+PG
Sbjct: 374 GDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGP--PGQPG 415
Score = 29.3 bits (64), Expect = 3.3
Identities = 29/77 (37%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 86 EAAETVP-LQVPLAPPQEGLL--LRGPTGHRGGRG-RGRRG-EGRAGFGSSWGLGQSCLG 140
+A VP L P PP L + GP G G G +G +G +G G GL G
Sbjct: 546 QAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLP----G 601
Query: 141 HEGGRLVPGPVGPSGSR 157
G VPGP GP G R
Sbjct: 602 TPGPIGVPGPAGPKGER 618
Score = 28.5 bits (62), Expect = 5.6
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS--CLGHEGGRLVPGPVGPSGSRHLHLPVD 164
+GP G +G +G +GE G+ Q L G +PG +GP G+ +P
Sbjct: 426 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAP--GIPGQ 483
Query: 165 PLHSGRPGAP-HRG-RDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKH 222
G PG P H G + PR G+PG P+ P G G V GE H
Sbjct: 484 KGEIGLPGPPGHDGEKGPR----------GKPGDMGPPGPQGPPGKDGPPG--VKGENGH 531
Query: 223 GYQYPGMASEGAARPADG 240
PG E + G
Sbjct: 532 ----PGSPGEKGEKGETG 545
Score = 28.1 bits (61), Expect = 7.3
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 148 PGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPR 207
PGP GP G L P+ P G PG P DP GR G R +
Sbjct: 278 PGPSGPLGHPGLPGPMGP--PGLPGPPGPKGDPGIQG-----YHGRKGERGMPGMPGKHG 330
Query: 208 AQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
A+G G V G +K PG E A + G
Sbjct: 331 AKGAPGIAVAG-MKGEPGIPGTKGEKGAEGSPG 362
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 34/142 (23%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRG-RGRRGEGRAGFGSS 131
L+L G P G + P P P Q+G + L GP GH G +G RG+ G+
Sbjct: 460 LALMGPPGLPG----QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGD-------- 507
Query: 132 WGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP 191
+G G + PG GP G + +G PG+P + +T Q
Sbjct: 508 -------MGPPGPQGPPGKDGPPGVKG--------ENGHPGSPGEKGEKG-----ETGQA 547
Query: 192 GRPGRRPRQEPELRPRAQGLTG 213
G PG + + P A+GL G
Sbjct: 548 GSPGEKGEAGEKGNPGAEGLQG 569
Score = 30.0 bits (66), Expect = 1.9
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 73 ELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-------GRRGEGR 125
E + G P G + A + + P + G G +G G G++GE +
Sbjct: 319 ERGMPGMPGKHGAKGAPGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKGE-K 373
Query: 126 AGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPG 172
G+S G G+ G G +PGP GP G + V P G+PG
Sbjct: 374 GDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGP--PGQPG 415
Score = 29.6 bits (65), Expect = 2.5
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 99 PPQEGLL-LRGPTGHRGGRG-RGRRG-EGRAGFGSSWGLGQSCLGHEGGRLVPGPVGPSG 155
P EGL + GP G G G +G +G +G G GL G G VPGP GP G
Sbjct: 562 PGAEGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLP----GTPGPIGVPGPAGPKG 617
Query: 156 SR 157
R
Sbjct: 618 ER 619
Score = 28.5 bits (62), Expect = 5.6
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS--CLGHEGGRLVPGPVGPSGSRHLHLPVD 164
+GP G +G +G +GE G+ Q L G +PG +GP G+ +P
Sbjct: 426 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAP--GIPGQ 483
Query: 165 PLHSGRPGAP-HRG-RDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKH 222
G PG P H G + PR G+PG P+ P G G V GE H
Sbjct: 484 KGEIGLPGPPGHDGEKGPR----------GKPGDMGPPGPQGPPGKDGPPG--VKGENGH 531
Query: 223 GYQYPGMASEGAARPADG 240
PG E + G
Sbjct: 532 ----PGSPGEKGEKGETG 545
Score = 28.1 bits (61), Expect = 7.3
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 148 PGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPR 207
PGP GP G L P+ P G PG P DP GR G R +
Sbjct: 278 PGPSGPLGHPGLPGPMGP--PGLPGPPGPKGDPGIQG-----YHGRKGERGMPGMPGKHG 330
Query: 208 AQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
A+G G V G +K PG E A + G
Sbjct: 331 AKGAPGIAVAG-MKGEPGIPGTKGEKGAEGSPG 362
>gi|22027583 alpha 1 type XIII collagen isoform 7 [Homo sapiens]
Length = 703
Score = 40.4 bits (93), Expect = 0.001
Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 34/142 (23%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRG-RGRRGEGRAGFGSS 131
L+L G P G + P P P Q+G + L GP GH G +G RG+ G+
Sbjct: 460 LALMGPPGLPG----QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGD-------- 507
Query: 132 WGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP 191
+G G + PG GP G + +G PG+P + +T Q
Sbjct: 508 -------MGPPGPQGPPGKDGPPGVKG--------ENGHPGSPGEKGEKG-----ETGQA 547
Query: 192 GRPGRRPRQEPELRPRAQGLTG 213
G PG + + P A+GL G
Sbjct: 548 GSPGEKGEAGEKGNPGAEGLQG 569
Score = 30.0 bits (66), Expect = 1.9
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 73 ELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-------GRRGEGR 125
E + G P G + A + + P + G G +G G G++GE +
Sbjct: 319 ERGMPGMPGKHGAKGAPGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKGE-K 373
Query: 126 AGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPG 172
G+S G G+ G G +PGP GP G + V P G+PG
Sbjct: 374 GDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGP--PGQPG 415
Score = 28.5 bits (62), Expect = 5.6
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS--CLGHEGGRLVPGPVGPSGSRHLHLPVD 164
+GP G +G +G +GE G+ Q L G +PG +GP G+ +P
Sbjct: 426 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAP--GIPGQ 483
Query: 165 PLHSGRPGAP-HRG-RDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKH 222
G PG P H G + PR G+PG P+ P G G V GE H
Sbjct: 484 KGEIGLPGPPGHDGEKGPR----------GKPGDMGPPGPQGPPGKDGPPG--VKGENGH 531
Query: 223 GYQYPGMASEGAARPADG 240
PG E + G
Sbjct: 532 ----PGSPGEKGEKGETG 545
Score = 28.5 bits (62), Expect = 5.6
Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 99 PPQEGLL-LRGPTGHRGGRG-RGRRG-EGRAGFGSSWGL-GQSCL-------GHEGGRLV 147
P EGL + GP G G G +G +G +G G GL G S L G G V
Sbjct: 562 PGAEGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGLDGRPGPPGTPGPIGV 621
Query: 148 PGPVGPSGSR 157
PGP GP G R
Sbjct: 622 PGPAGPKGER 631
Score = 28.1 bits (61), Expect = 7.3
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 148 PGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPR 207
PGP GP G L P+ P G PG P DP GR G R +
Sbjct: 278 PGPSGPLGHPGLPGPMGP--PGLPGPPGPKGDPGIQG-----YHGRKGERGMPGMPGKHG 330
Query: 208 AQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
A+G G V G +K PG E A + G
Sbjct: 331 AKGAPGIAVAG-MKGEPGIPGTKGEKGAEGSPG 362
>gi|22027580 alpha 1 type XIII collagen isoform 6 [Homo sapiens]
Length = 702
Score = 40.4 bits (93), Expect = 0.001
Identities = 42/142 (29%), Positives = 56/142 (39%), Gaps = 35/142 (24%)
Query: 74 LSLCGGPAASGVEAAETVPLQVPLAPPQEGLL-LRGPTGHRGGRG-RGRRGEGRAGFGSS 131
L+L G P G + P P P Q+G + L GP GH G +G RG+ G+
Sbjct: 460 LALMGPPGLPG----QIGPPGAPGIPGQKGEIGLPGPPGHDGEKGPRGKPGD-------- 507
Query: 132 WGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQP 191
+G G + PG GP G + +G PG+P + +P P
Sbjct: 508 -------MGPPGPQGPPGKDGPPGVKG--------ENGHPGSPGEKGEKGETGQAGSPVP 552
Query: 192 GRPGRRPRQEPELRPRAQGLTG 213
G PG PE P GL G
Sbjct: 553 GLPG------PEGPPGPPGLQG 568
Score = 30.0 bits (66), Expect = 1.9
Identities = 30/107 (28%), Positives = 44/107 (41%), Gaps = 17/107 (15%)
Query: 73 ELSLCGGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRGR-------GRRGEGR 125
E + G P G + A + + P + G G +G G G++GE +
Sbjct: 319 ERGMPGMPGKHGAKGAPGIAVAGMKGEPG----IPGTKGEKGAEGSPGLPGLLGQKGE-K 373
Query: 126 AGFGSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVDPLHSGRPG 172
G+S G G+ G G +PGP GP G + V P G+PG
Sbjct: 374 GDAGNSIGGGR---GEPGPPGLPGPPGPKGEAGVDGQVGP--PGQPG 415
Score = 28.5 bits (62), Expect = 5.6
Identities = 40/138 (28%), Positives = 53/138 (38%), Gaps = 22/138 (15%)
Query: 107 RGPTGHRGGRGRGRRGEGRAGFGSSWGLGQS--CLGHEGGRLVPGPVGPSGSRHLHLPVD 164
+GP G +G +G +GE G+ Q L G +PG +GP G+ +P
Sbjct: 426 QGPDGPKGSKGEPGKGEMVDYNGNINEALQEIRTLALMGPPGLPGQIGPPGAP--GIPGQ 483
Query: 165 PLHSGRPGAP-HRG-RDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTGGQVHGELKH 222
G PG P H G + PR G+PG P+ P G G V GE H
Sbjct: 484 KGEIGLPGPPGHDGEKGPR----------GKPGDMGPPGPQGPPGKDGPPG--VKGENGH 531
Query: 223 GYQYPGMASEGAARPADG 240
PG E + G
Sbjct: 532 ----PGSPGEKGEKGETG 545
Score = 28.1 bits (61), Expect = 7.3
Identities = 30/93 (32%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 148 PGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPR 207
PGP GP G L P+ P G PG P DP GR G R +
Sbjct: 278 PGPSGPLGHPGLPGPMGP--PGLPGPPGPKGDPGIQG-----YHGRKGERGMPGMPGKHG 330
Query: 208 AQGLTGGQVHGELKHGYQYPGMASEGAARPADG 240
A+G G V G +K PG E A + G
Sbjct: 331 AKGAPGIAVAG-MKGEPGIPGTKGEKGAEGSPG 362
Score = 28.1 bits (61), Expect = 7.3
Identities = 32/85 (37%), Positives = 37/85 (43%), Gaps = 13/85 (15%)
Query: 86 EAAETVP-LQVPLAPPQEGLL--LRGPTGHRGGRG-RGRRG-EGRAGFGSSWGL-GQSCL 139
+A VP L P PP L + GP G G G +G +G +G G GL G S L
Sbjct: 546 QAGSPVPGLPGPEGPPGPPGLQGVPGPKGEAGLDGAKGEKGFQGEKGDRGPLGLPGASGL 605
Query: 140 -------GHEGGRLVPGPVGPSGSR 157
G G VPGP GP G R
Sbjct: 606 DGRPGPPGTPGPIGVPGPAGPKGER 630
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 40.0 bits (92), Expect = 0.002
Identities = 51/149 (34%), Positives = 60/149 (40%), Gaps = 35/149 (23%)
Query: 96 PLAPPQEGLLLRGPTGHRGGRG-RGRRGE-GRAGFGSSWGLGQSCLGHEGGRLVPGPVGP 153
P+ PP G L +G G G +G RG +G G AG G G +G R +PG GP
Sbjct: 572 PVGPPGSGGL-KGEPGDVGPQGPRGVQGPPGPAGKPGRRGRA----GSDGARGMPGQTGP 626
Query: 154 SGSRHLH----LP------VDPLHSGRPGAP----HRGRD-------------PRWLSTP 186
G R LP DP SG PG P RG D PR L P
Sbjct: 627 KGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGP 686
Query: 187 KTPQPGRPGRRPRQEPELRPRAQGLTGGQ 215
K P PG PG + +P +G G Q
Sbjct: 687 KGP-PGPPGPPGVTGMDGQPGPKGNVGPQ 714
Score = 37.0 bits (84), Expect = 0.016
Identities = 40/122 (32%), Positives = 47/122 (38%), Gaps = 26/122 (21%)
Query: 96 PLAPPQEGLLLRGPTGHRGGRGR-GRRG-EGRAGFGSSWGLGQSCLGHEGGRLVPGPVGP 153
PL PP E +G G G G GR+G +G GF G G +GGR PG GP
Sbjct: 857 PLGPPGE----KGKLGVPGLPGYPGRQGPKGSIGFPGFPGAN----GEKGGRGTPGKPGP 908
Query: 154 SGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRPRAQGLTG 213
G R P P R PR + T +PG G P P +G G
Sbjct: 909 RGQR------------GPTGPRGERGPRGI----TGKPGPKGNSGGDGPAGPPGERGPNG 952
Query: 214 GQ 215
Q
Sbjct: 953 PQ 954
Score = 37.0 bits (84), Expect = 0.016
Identities = 44/141 (31%), Positives = 52/141 (36%), Gaps = 14/141 (9%)
Query: 108 GPTGHRGGRGR-GRRG-EGRAGFGSSWGL-GQSCLGHEGGRLVPGPVGPSGSRHLHLPVD 164
GPTG +G G+ G G +G G GL GQ G EG R PGP GP G + L
Sbjct: 1180 GPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQK--GDEGPRGFPGPPGPVGLQGL----- 1232
Query: 165 PLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQE-PELRPRAQGLTGGQVHGELKHG 223
G PG D + P P P P P + P+ P G G
Sbjct: 1233 ---PGPPGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIGNPGAVGEKGEPGE 1289
Query: 224 YQYPGMASEGAARPADGHGAE 244
PG+ EG G E
Sbjct: 1290 AGEPGLPGEGGPPGPKGERGE 1310
Score = 35.8 bits (81), Expect = 0.035
Identities = 42/130 (32%), Positives = 49/130 (37%), Gaps = 33/130 (25%)
Query: 78 GGPAASGVEAAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGEGRAGFGSSWGLGQ 136
G P A+G + P + P G RGPTG RG RG RG G+
Sbjct: 889 GFPGANGEKGGRGTPGK----PGPRGQ--RGPTGPRGERGPRGITGK------------P 930
Query: 137 SCLGHEGGRLVPGPVGPSGSRHLHLPVDPL----HSGRPGAP-------HRGRDPRWLST 185
G+ GG GP GP G R + P P G PG P H G+
Sbjct: 931 GPKGNSGG---DGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 987
Query: 186 PKTPQPGRPG 195
KT PG PG
Sbjct: 988 GKTGPPGPPG 997
Score = 34.3 bits (77), Expect = 0.10
Identities = 41/127 (32%), Positives = 49/127 (38%), Gaps = 14/127 (11%)
Query: 96 PLAPPQEGLL-LRGPTGHRGGRGR----GRRGE-GRAGFGSSWGLGQ--SCLGHEGGRLV 147
P P ++GL L G G +G G G+ G G GF GL LG +G
Sbjct: 1020 PGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGP 1079
Query: 148 PGPVGPSGSRHLHLPVDPLHS-GRPGAPHRGRDPRWLSTPKTPQPGRPGRRPRQEPELRP 206
PGP GP+GS P G PG P P + G PG + Q P R
Sbjct: 1080 PGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPP-----GPAGEKGAPGEKGPQGPAGRD 1134
Query: 207 RAQGLTG 213
QG G
Sbjct: 1135 GLQGPVG 1141
Score = 32.7 bits (73), Expect = 0.29
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 31/137 (22%)
Query: 106 LRGPTGHRGGRG-RGRRGE-GRAGFGSSWGLG-----------------QSCLGHEGGRL 146
++G G RG +G +G +GE G GF G+ + G G
Sbjct: 794 VKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGGPNG 853
Query: 147 VPGPVGPSGSR-HLHLPVDPLHSGR---------PGAPHRGRDPRWLSTPKTPQPGRPGR 196
PGP+GP G + L +P P + GR PG P + TP +PG G+
Sbjct: 854 DPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTP--GKPGPRGQ 911
Query: 197 RPRQEPELRPRAQGLTG 213
R P +G+TG
Sbjct: 912 RGPTGPRGERGPRGITG 928
Score = 28.9 bits (63), Expect = 4.3
Identities = 48/164 (29%), Positives = 59/164 (35%), Gaps = 53/164 (32%)
Query: 79 GPAASGVE---AAETVPLQVPLAPPQEGLLLRGPTGHRGGRG-RGRRGE-GRAGFGSSWG 133
GPA S E A P+ +P P +G GP G +G G +G +G GR G G
Sbjct: 1084 GPAGSPGERGPAGAAGPIGIPGRPGPQGP--PGPAGEKGAPGEKGPQGPAGRDGLQGPVG 1141
Query: 134 L----------------------GQS-CLGHEGGRLVPGPVGPSGSRHLHLPV-DPLHSG 169
L GQ G +G + PGP GP G P+ P SG
Sbjct: 1142 LPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQGPPGPTGPQG------PIGQPGPSG 1195
Query: 170 RPGAP-HRGRD----------PRWLSTPKTP-----QPGRPGRR 197
G P RG+ PR P P PG PG +
Sbjct: 1196 ADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPGEK 1239
Score = 28.9 bits (63), Expect = 4.3
Identities = 43/142 (30%), Positives = 57/142 (40%), Gaps = 30/142 (21%)
Query: 78 GGPAASGVEAAETVPLQV-----PLAPPQEGLLLRGPTGHRGGRG-RGRRG-EGRAGFGS 130
G P G + +P V P +P +G GP G G G +G G +G G
Sbjct: 1429 GAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGP--PGPMGPPGLPGLKGDSGPKGEKGHPG 1486
Query: 131 SWGL----GQSCLGHEGGRLVPGP---VGPSGSRHLHLPVDPLHSGRPGAPHRGRDP--- 180
GL G+ G +G R +PGP GP G + + P P+ G PG P P
Sbjct: 1487 LIGLIGPPGEQ--GEKGDRGLPGPQGSSGPKGEQGITGPSGPI--GPPGPPGLPGPPGPK 1542
Query: 181 --RWLSTPKTPQ-----PGRPG 195
+ S P P+ PG PG
Sbjct: 1543 GAKGSSGPTGPKGEAGHPGPPG 1564
Score = 28.1 bits (61), Expect = 7.3
Identities = 26/73 (35%), Positives = 29/73 (39%), Gaps = 21/73 (28%)
Query: 142 EGGRLVPGPVGPSGSRHLHLPVDPLHSGRPGAPHRGRDPRWLSTPKTPQPGRPGRR-PRQ 200
E G L+ GP GP G +G PG P + T Q G PG R P
Sbjct: 462 EPGMLIEGPPGPEGP-----------AGLPGPPG--------TMGPTGQVGDPGERGPPG 502
Query: 201 EPELRPRAQGLTG 213
P L P A GL G
Sbjct: 503 RPGL-PGADGLPG 514
Score = 27.7 bits (60), Expect = 9.5
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 78 GGPAASGVEAAETVP-LQVPLAPPQEGLLLRGPTGHRGGRGRGRRGEGRAGFGSSWGLGQ 136
G P G A+ +P Q + PP E +GP G G G +G G G
Sbjct: 718 GPPGQQGNPGAQGLPGPQGAIGPPGE----KGPLGKPGLPGMPG-ADGPPGHPGKEGPP- 771
Query: 137 SCLGHEGGRLVPGPVGPSG 155
G +GG+ PGP GP G
Sbjct: 772 ---GEKGGQGPPGPQGPIG 787
Score = 27.7 bits (60), Expect = 9.5
Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 108 GPTGHRGGRG-RGRRGE-GRAGF-GSSWGLGQSCLGHEGGRLVPGPVGPSGSRHLHLPVD 164
GP G G G +G GE G+ G G + G S G G R PGP GP G
Sbjct: 1354 GPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPS--GPPGKRGPPGPAGPEG--------- 1402
Query: 165 PLHSGRPGAPHRG--RDPRWLSTPKTPQ--PGRPG 195
G GA P + P PQ PG+PG
Sbjct: 1403 --RQGEKGAKGEAGLEGPPGKTGPIGPQGAPGKPG 1435
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.140 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,689,351
Number of Sequences: 37866
Number of extensions: 883567
Number of successful extensions: 6237
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 502
Number of HSP's that attempted gapping in prelim test: 4545
Number of HSP's gapped (non-prelim): 1641
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.