Guide to the Human Genome
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Name: LOC100290604 Sequence: fasta or formatted (245aa) NCBI GI: 239747216
Description:

PREDICTED: hypothetical protein XP_002346941

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         18           2
 C cysteine            1.6          4           1
 D aspartate           2.0          5           1
 E glutamate           5.3         13           1
 F phenylalanine       0.8          2           1
 G glycine            17.6         43           2
 H histidine           3.7          9           1
 I isoleucine          0.8          2           1
 K lysine              1.2          3           1
 L leucine            10.6         26           3
 M methionine          1.2          3           1
 N asparagine          0.4          1           1
 P proline            11.8         29           2
 Q glutamine           3.3          8           1
 R arginine            9.4         23           2
 S serine              6.9         17           2
 T threonine           3.3          8           1
 V valine             10.6         26           7
 W tryptophan          1.2          3           1
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346941 
LOC100287848          1.000   PREDICTED: hypothetical protein XP_002342070 
LOC100292291          0.975   PREDICTED: hypothetical protein 
COL1A1                0.045   alpha 1 type I collagen preproprotein 
COL11A2               0.045   collagen, type XI, alpha 2 isoform 2 preproprotein ...
COL11A2               0.045   collagen, type XI, alpha 2 isoform 3 preproprotein ...
COL11A2               0.045   collagen, type XI, alpha 2 isoform 1 preproprotein ...
COL16A1               0.043   alpha 1 type XVI collagen precursor 
COL1A2                0.039   alpha 2 type I collagen 
PPP1R10               0.039   protein phosphatase 1, regulatory subunit 10 
COL9A3                0.039   alpha 3 type IX collagen 
COL10A1               0.037   type X collagen alpha 1 precursor 
LOC100293055          0.037   PREDICTED: similar to COL22A1 protein 
COL27A1               0.037   collagen, type XXVII, alpha 1 
COL28A1               0.037   collagen, type XXVIII precursor 
COL3A1                0.035   collagen type III alpha 1 preproprotein 
COL17A1               0.035   alpha 1 type XVII collagen 
COL22A1               0.035   collagen, type XXII, alpha 1 
COL7A1                0.035   alpha 1 type VII collagen precursor 
LOC643355             0.033   PREDICTED: hypothetical protein 
LOC643355             0.033   PREDICTED: hypothetical protein 
COLEC12               0.033   collectin sub-family member 12 
COL5A2                0.031   alpha 2 type V collagen preproprotein 
COL13A1               0.031   alpha 1 type XIII collagen isoform 19 
COL13A1               0.031   alpha 1 type XIII collagen isoform 15 
COL13A1               0.031   alpha 1 type XIII collagen isoform 13 
COL13A1               0.031   alpha 1 type XIII collagen isoform 12 
COL13A1               0.031   alpha 1 type XIII collagen isoform 7 
COL13A1               0.031   alpha 1 type XIII collagen isoform 6 
COL5A1                0.031   alpha 1 type V collagen preproprotein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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