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Search of human proteins with 239746282
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
(725 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo ... 1471 0.0
gi|239751791 PREDICTED: hypothetical protein [Homo sapiens] 1114 0.0
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 59 1e-08
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 59 1e-08
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 56 1e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 55 2e-07
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 55 2e-07
gi|48762934 alpha 2 type I collagen [Homo sapiens] 55 3e-07
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 54 4e-07
gi|223633935 hypothetical protein LOC254427 [Homo sapiens] 54 5e-07
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 54 5e-07
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 51 3e-06
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 51 4e-06
gi|171543895 ataxin 2 [Homo sapiens] 51 4e-06
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 50 7e-06
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 50 7e-06
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 50 7e-06
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 50 1e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 49 2e-05
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 48 4e-05
gi|4758410 fragile X mental retardation syndrome related protein... 48 4e-05
gi|239754342 PREDICTED: hypothetical protein [Homo sapiens] 47 5e-05
gi|239750574 PREDICTED: hypothetical protein [Homo sapiens] 47 5e-05
gi|169205732 PREDICTED: hypothetical protein [Homo sapiens] 47 5e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 47 6e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 47 6e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 47 6e-05
gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo ... 47 8e-05
gi|239508715 PREDICTED: hypothetical protein [Homo sapiens] 47 8e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 47 8e-05
>gi|239746282 PREDICTED: hypothetical protein XP_002343723 [Homo
sapiens]
Length = 725
Score = 1471 bits (3808), Expect = 0.0
Identities = 725/725 (100%), Positives = 725/725 (100%)
Query: 1 MSMSSSVGCTLGGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGR 60
MSMSSSVGCTLGGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGR
Sbjct: 1 MSMSSSVGCTLGGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGR 60
Query: 61 PGNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAA 120
PGNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAA
Sbjct: 61 PGNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAA 120
Query: 121 VTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVE 180
VTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVE
Sbjct: 121 VTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVE 180
Query: 181 LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA 240
LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA
Sbjct: 181 LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA 240
Query: 241 ARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTE 300
ARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTE
Sbjct: 241 ARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTE 300
Query: 301 RVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTGLEQAAALEVALALA 360
RVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTGLEQAAALEVALALA
Sbjct: 301 RVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTGLEQAAALEVALALA 360
Query: 361 DPGLLLAQLAHEQVQLPFHDVHLTFCQLLLPPPQLLLLEALLLCRPQQLLLTAPKLLGRR 420
DPGLLLAQLAHEQVQLPFHDVHLTFCQLLLPPPQLLLLEALLLCRPQQLLLTAPKLLGRR
Sbjct: 361 DPGLLLAQLAHEQVQLPFHDVHLTFCQLLLPPPQLLLLEALLLCRPQQLLLTAPKLLGRR 420
Query: 421 GGGWGEGLSCSASWGGTQGCCVCFQSSCSEWKDSSGIWNRADCSMTSSRFKMLPKSGRPS 480
GGGWGEGLSCSASWGGTQGCCVCFQSSCSEWKDSSGIWNRADCSMTSSRFKMLPKSGRPS
Sbjct: 421 GGGWGEGLSCSASWGGTQGCCVCFQSSCSEWKDSSGIWNRADCSMTSSRFKMLPKSGRPS 480
Query: 481 LPLQAEPTLVTGPRLTLQEAGKGLGARGGNGQRQLIHSHAIRHGQGVDLTRPSRPRLSAP 540
LPLQAEPTLVTGPRLTLQEAGKGLGARGGNGQRQLIHSHAIRHGQGVDLTRPSRPRLSAP
Sbjct: 481 LPLQAEPTLVTGPRLTLQEAGKGLGARGGNGQRQLIHSHAIRHGQGVDLTRPSRPRLSAP 540
Query: 541 PDITAFGEEGETDNLRRHPGVGPRSAHLGGLVPLAGEAEVRDLEHRVCEVVVLDGLQDQD 600
PDITAFGEEGETDNLRRHPGVGPRSAHLGGLVPLAGEAEVRDLEHRVCEVVVLDGLQDQD
Sbjct: 541 PDITAFGEEGETDNLRRHPGVGPRSAHLGGLVPLAGEAEVRDLEHRVCEVVVLDGLQDQD 600
Query: 601 CGVGRKAGKAYLTFTLKLQLVEGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPA 660
CGVGRKAGKAYLTFTLKLQLVEGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPA
Sbjct: 601 CGVGRKAGKAYLTFTLKLQLVEGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPA 660
Query: 661 LSNTAVQTGPAGVVPHSLATAPSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLR 720
LSNTAVQTGPAGVVPHSLATAPSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLR
Sbjct: 661 LSNTAVQTGPAGVVPHSLATAPSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLR 720
Query: 721 GLGSS 725
GLGSS
Sbjct: 721 GLGSS 725
>gi|239751791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 650
Score = 1114 bits (2881), Expect = 0.0
Identities = 574/661 (86%), Positives = 576/661 (87%), Gaps = 82/661 (12%)
Query: 1 MSMSSSVGCTLGGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGR 60
MSMSSSVGCTLGGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGR
Sbjct: 1 MSMSSSVGCTLGGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGR 60
Query: 61 PGNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAA 120
PGNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAA
Sbjct: 61 PGNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAA 120
Query: 121 VTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVE 180
VTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVE
Sbjct: 121 VTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVE 180
Query: 181 LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA 240
LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA
Sbjct: 181 LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA 240
Query: 241 ARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTE 300
ARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTE
Sbjct: 241 ARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTE 300
Query: 301 RVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTGLEQAAALEVALALA 360
RVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTGLEQAAALEVALALA
Sbjct: 301 RVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTGLEQAAALEVALALA 360
Query: 361 DPGLLLAQLAHEQVQLPFHDVHLTFCQLLLPPPQLLLLEALLLCRPQQLLLTAPKLLGRR 420
DPGLLLAQLAHEQVQLPFHDVHLTFCQLLLPPPQLLLLEALLL
Sbjct: 361 DPGLLLAQLAHEQVQLPFHDVHLTFCQLLLPPPQLLLLEALLL----------------- 403
Query: 421 GGGWGEGLSCSASWGGTQGCCVCFQSSCSEWKDSSGIWNRADCSMTSSRFKMLPKSGRPS 480
FQSSCSEWKDSSGIWNRADCSMTSSRFKMLPKSGRP
Sbjct: 404 -----------------------FQSSCSEWKDSSGIWNRADCSMTSSRFKMLPKSGRP- 439
Query: 481 LPLQAEPTLVTGPRLTLQEAGKGLGARGGNGQRQLIHSHAIRHGQGVDLTRPSRPRLSAP 540
G+G + HS RPSRPRLSAP
Sbjct: 440 ---------------------------WGSGSQ---HS-----------GRPSRPRLSAP 458
Query: 541 PDITAFGEEGETDNLRRHPGVGPRSAHLGGLVPLAGEAEVRDLEHRVCEVVVLDGLQDQD 600
PDITAFGEEGETDNLRRHPGVGPRSAHLGGLVPLAGEAEVRDLEHRVCEVVVLDGLQDQD
Sbjct: 459 PDITAFGEEGETDNLRRHPGVGPRSAHLGGLVPLAGEAEVRDLEHRVCEVVVLDGLQDQD 518
Query: 601 CGVGRKAGKAYLTFTLKLQLVEGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPA 660
CGVGRKAGKAYLTFTLKLQLVEGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPA
Sbjct: 519 CGVGRKAGKAYLTFTLKLQLVEGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPA 578
Query: 661 L 661
L
Sbjct: 579 L 579
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 59.3 bits (142), Expect = 1e-08
Identities = 60/185 (32%), Positives = 72/185 (38%), Gaps = 42/185 (22%)
Query: 148 GEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRR 207
G G G AGG GGG G+ G RS++R + R GA P GP +
Sbjct: 29 GGGEGAAAGGGGGGLGSGG-------RSAQR------RAGAGARRPIGAAPSVGPGGELQ 75
Query: 208 PWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQR 267
WGR G RP G G ++ RR P R S P A ++V R +R
Sbjct: 76 GWGRKSGCRPPGPEGWAGGRK---LRRWLPP--RRFSNFCCRSPCAQTAV------RRRR 124
Query: 268 RRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVELGPH--VRPFFLPPTSSSFFGGPP 325
RRAP P AG +G G AG GT G P LP G P
Sbjct: 125 RRAPSPRGAGWREGAG-----------AGRGTPATMAGGEWAAEPLHLPQR-----GRPA 168
Query: 326 RLHVP 330
LH+P
Sbjct: 169 PLHLP 173
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 59.3 bits (142), Expect = 1e-08
Identities = 60/185 (32%), Positives = 72/185 (38%), Gaps = 42/185 (22%)
Query: 148 GEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRR 207
G G G AGG GGG G+ G RS++R + R GA P GP +
Sbjct: 29 GGGEGAAAGGGGGGLGSGG-------RSAQR------RAGAGARRPIGAAPSVGPGGELQ 75
Query: 208 PWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQR 267
WGR G RP G G ++ RR P R S P A ++V R +R
Sbjct: 76 GWGRKSGCRPPGPEGWAGGRK---LRRWLPP--RRFSNFCCRSPCAQTAV------RRRR 124
Query: 268 RRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVELGPH--VRPFFLPPTSSSFFGGPP 325
RRAP P AG +G G AG GT G P LP G P
Sbjct: 125 RRAPSPRGAGWREGAG-----------AGRGTPATMAGGEWAAEPLHLPQR-----GRPA 168
Query: 326 RLHVP 330
LH+P
Sbjct: 169 PLHLP 173
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 55.8 bits (133), Expect = 1e-07
Identities = 50/149 (33%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 148 GEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRR 207
G G G AGG GGG G+ G RS++R + R GA P GP +
Sbjct: 29 GGGEGAAAGGGGGGLGSGG-------RSAQR------RAGAGARRPIGAAPSVGPGGELQ 75
Query: 208 PWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQR 267
WGR G RP G G ++ RR P R S P A ++V R +R
Sbjct: 76 GWGRKSGCRPPGPEGWAGGRK---LRRWLPP--RRFSNFCCRSPCAQTAV------RRRR 124
Query: 268 RRAPCPHRAGGADGVGSHGARAPGEGSAG 296
RRAP P AG +G G+ G P + G
Sbjct: 125 RRAPSPRGAGWREGAGA-GRGTPATMAGG 152
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 55.1 bits (131), Expect = 2e-07
Identities = 85/323 (26%), Positives = 105/323 (32%), Gaps = 43/323 (13%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGR-GLGAKVRVVGRPGNSGGRRRA 70
G PG G GL G P +G+ AAG G G PG G + A
Sbjct: 296 GAPGQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEA 355
Query: 71 GNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLT-AHAAVTWVGVSDW 129
G + + R P PAG+ GP A + G P A+ A G +
Sbjct: 356 GPQGPRGSEGPQGVRGEPGPPGPAGAAGP----AGNPGADGQPGAKGANGAPGIAGAPGF 411
Query: 130 RGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSER----VELQSDT 185
G+ RG +G G G G G G GA S + ++ V +Q
Sbjct: 412 PGA----------RGPSGPQGPG-GPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPP 460
Query: 186 DDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPA---RGKKRPSSQRRCSSPSAAR 242
+ GAR PGPT P G GG RG A G K P+ +R P+ +
Sbjct: 461 GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 520
Query: 243 ASATSAPRP-----------------TAPSSVAQPSSARSQ--RRRAPCPHRAGGADGVG 283
S A RP P P Q R P P A G GV
Sbjct: 521 GSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVM 580
Query: 284 SHGARAPGEGSAGSGTERVELGP 306
G G ER GP
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGP 603
Score = 43.9 bits (102), Expect = 5e-04
Identities = 98/376 (26%), Positives = 125/376 (33%), Gaps = 85/376 (22%)
Query: 11 LGGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRA 70
+G PG G G G P T F G AAGR VG PG SG
Sbjct: 856 VGAPGAKGARGSAGP------PGATGFPG------AAGR--------VGPPGPSGNAGPP 895
Query: 71 G-----NRAWGSGRRGKSRRSRGPG----PWPAGSGGPRCPSAPSDGVRRCPRLTAHAAV 121
G + G G RG++ + PG P P G G + S +DG P +
Sbjct: 896 GPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEK-GSPGADGPAGAPGTPGPQGI 954
Query: 122 TW----VGVSDWRGS--FLKL---------------SSSRSTRGLVLGEGVGVGAGGEGG 160
VG+ RG F L S R G + G+ G GE G
Sbjct: 955 AGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLA-GPPGESG 1013
Query: 161 GEGAAGAASSLSERSSERVEL-QSDTDDSDTRVAEGARPRPGPTSSRR------------ 207
EGA GA S S + + +T + A GA PGP
Sbjct: 1014 REGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAG 1073
Query: 208 ---PWGRAGGLRPRGKRPARGKKRPSSQR--------RCSSPSAARASATSAPRPTAPSS 256
P G G P G + RG K + ++ R S +P PS
Sbjct: 1074 PAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSG 1133
Query: 257 VAQPSSARSQRRRAPCPHRAG--GADG-VGSHGARAPGEGSAGSGTERVELGPHVRPFFL 313
+ P+ R A P + G G G +G G R G AG GP P
Sbjct: 1134 ASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRG-RTGDAGPVGPPGPPGPPGPPG-- 1190
Query: 314 PPTSS---SFFGGPPR 326
PP++ SF PP+
Sbjct: 1191 PPSAGFDFSFLPQPPQ 1206
Score = 43.1 bits (100), Expect = 0.001
Identities = 80/313 (25%), Positives = 100/313 (31%), Gaps = 38/313 (12%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAG 71
G GL G G GG P G K A RG G PG +G AG
Sbjct: 476 GPTGLPGPPGERGGPGSRGFPGADGVAGPKGP--AGERGSPGPAGPKGSPGEAGRPGEAG 533
Query: 72 NRAWGSGRRGKSRRSRGPGP-------WPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWV 124
G +G + PGP PAG G P P P A V +
Sbjct: 534 L----PGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGP-------PGARGQAGV--M 580
Query: 125 GVSDWRGSFLKLSSSRSTRGLVLGEG-VG-VGAGGEGGGEGAAGAASSLSERSSERVE-- 180
G +G+ + + RG+ G VG G GE G +G G A ER +
Sbjct: 581 GFPGPKGAAGEPGKA-GERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGS 639
Query: 181 -----LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRC 235
L G + PG + P G G G+R +G P+ R
Sbjct: 640 PGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGA 699
Query: 236 SSPSAARASATSAPRPTAPSSVAQP--SSARSQRRRAPCPHRAGGADGVGSHGARAPGEG 293
+ + A P AP S P +R A P G G GA +G
Sbjct: 700 NGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGA----DG 755
Query: 294 SAGSGTERVELGP 306
S G R GP
Sbjct: 756 SPGKDGVRGLTGP 768
Score = 42.7 bits (99), Expect = 0.001
Identities = 87/329 (26%), Positives = 103/329 (31%), Gaps = 53/329 (16%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAG----RGLGAKVRVVGRPGNSGGR 67
G PG G+ G G + +P E G +G RG + V G PG +G R
Sbjct: 638 GSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPR 697
Query: 68 RRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVS 127
G G G + PG P G P P + A G
Sbjct: 698 GANG----APGNDGAKGDAGAPGA-PGSQGAPGLQGMPGE----------RGAAGLPGPK 742
Query: 128 DWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDD 187
RG + + G +GV G G G G AGA E +
Sbjct: 743 GDRGD----AGPKGADGSPGKDGVR-GLTGPIGPPGPAGAPGDKGE-----------SGP 786
Query: 188 SDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATS 247
S GAR PG P G AG P G G K + A
Sbjct: 787 SGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGP 846
Query: 248 APRPTAPSSVAQPSSARSQRRRAPCPHRAG--GADG-VGSHG----ARAPG----EGSAG 296
A P +V P A+ R A P G GA G VG G A PG G G
Sbjct: 847 AGPPGPIGNVGAP-GAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEG 905
Query: 297 SGTERVELGPHVRPFFLPPTSSSFFGGPP 325
R E GP RP + P GPP
Sbjct: 906 GKGPRGETGPAGRPGEVGPP------GPP 928
Score = 39.7 bits (91), Expect = 0.010
Identities = 102/390 (26%), Positives = 125/390 (32%), Gaps = 71/390 (18%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSK--RGRLAAGRGLGAKVRVVGRPGNSGGRRR 69
G PG GV G LG S E F G + +G GA G PGN G +
Sbjct: 656 GKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGAN----GAPGNDGAKGD 711
Query: 70 AGNRAWGSGRRGKSRRSRGPG-------PWPAGSGGPRCP-----SAPSDGVRRCPRLTA 117
AG G +G PG P P G G P S DGVR
Sbjct: 712 AGAPG-APGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLT---- 766
Query: 118 HAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSE 177
+ G + G K S S G G GE G G AG A +
Sbjct: 767 -GPIGPPGPAGAPGD--KGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPG--ADG 821
Query: 178 RVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSS 237
+ + + D+ A+G PGP P G G + G + ARG P
Sbjct: 822 QPGAKGEPGDAG---AKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPG--ATGF 876
Query: 238 PSAA-------RASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAG------------- 277
P AA + P P P+ R + A P G
Sbjct: 877 PGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGS 936
Query: 278 -GADG-VGSHGARAP-----GEGSAGSGTERVEL------GPHVRPFFLPPTSSSFFGGP 324
GADG G+ G P G G +R E GP P P+ +S GP
Sbjct: 937 PGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGP 996
Query: 325 PRLHVPLPPLLLPLLLPPQSTGLEQAAALE 354
P P+ P L PP +G E A E
Sbjct: 997 PG---PMGP--PGLAGPPGESGREGAPGAE 1021
Score = 35.0 bits (79), Expect = 0.25
Identities = 29/96 (30%), Positives = 36/96 (37%), Gaps = 6/96 (6%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G+ RG G G AG+D A A PGP + + GPAG P+
Sbjct: 593 GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP- 651
Query: 687 MGEGPGAAGGRFTQAARG-MQRAGPGGRDGGQSLRG 721
PG AG Q G + GP G G + G
Sbjct: 652 ----PGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 683
Score = 32.7 bits (73), Expect = 1.2
Identities = 25/89 (28%), Positives = 32/89 (35%), Gaps = 1/89 (1%)
Query: 633 GCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEGPG 692
G G G AGE A +PGPP A + G AG P+ +GP
Sbjct: 578 GVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPA 637
Query: 693 AAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
+ G F G G+ G Q + G
Sbjct: 638 GSPG-FQGLPGPAGPPGEAGKPGEQGVPG 665
Score = 32.7 bits (73), Expect = 1.2
Identities = 31/97 (31%), Positives = 36/97 (37%), Gaps = 8/97 (8%)
Query: 633 GCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEG-- 690
G G G GE A A GPP + A GP G V A S+ G
Sbjct: 815 GPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGAT 874
Query: 691 --PGAAGGRFTQAARGMQ----RAGPGGRDGGQSLRG 721
PGAAG G GP G++GG+ RG
Sbjct: 875 GFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG 911
Score = 32.3 bits (72), Expect = 1.6
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 631 ARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEG 690
A G G G G+ PG P GPAG T P+ + G
Sbjct: 1020 AEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVG 1079
Query: 691 P-GAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
P GA G Q RG + G G G + ++G
Sbjct: 1080 PVGARGPAGPQGPRGDK--GETGEQGDRGIKG 1109
Score = 32.0 bits (71), Expect = 2.1
Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 1/100 (1%)
Query: 623 GDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAP 682
G+ QL GG V G + LPGPP GP G A+ P
Sbjct: 157 GNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGP 216
Query: 683 SSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRGL 722
GP G +A + R G G G Q RGL
Sbjct: 217 MGPRGPPGPPGKNGDDGEAGK-PGRPGERGPPGPQGARGL 255
Score = 32.0 bits (71), Expect = 2.1
Identities = 28/100 (28%), Positives = 30/100 (30%), Gaps = 10/100 (10%)
Query: 622 EGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATA 681
E L G G G G G A PGPP Q G G
Sbjct: 531 EAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF-------- 582
Query: 682 PSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
P PG AG R G GP G+DG +G
Sbjct: 583 PGPKGAAGEPGKAGERGVPGPPG--AVGPAGKDGEAGAQG 620
Score = 32.0 bits (71), Expect = 2.1
Identities = 29/106 (27%), Positives = 35/106 (33%), Gaps = 12/106 (11%)
Query: 626 LGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSS 685
+G + A G G G G A GPP S A GP G P
Sbjct: 853 IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGE 912
Query: 686 SMGEG----------PGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
+ G PG AG + + A G AG G G Q + G
Sbjct: 913 TGPAGRPGEVGPPGPPGPAGEKGSPGADG--PAGAPGTPGPQGIAG 956
Score = 31.6 bits (70), Expect = 2.7
Identities = 32/102 (31%), Positives = 36/102 (35%), Gaps = 15/102 (14%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGP------PALSNTAVQTGPAGVVPHSLAT 680
GQ A+G G AG AG A PGP P GP G A
Sbjct: 821 GQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAA 880
Query: 681 ------APSSSSMGEG-PGAAGGRFTQAARGMQRAGPGGRDG 715
PS ++ G PG AG + RG GP GR G
Sbjct: 881 GRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG--ETGPAGRPG 920
Score = 30.4 bits (67), Expect = 6.0
Identities = 31/95 (32%), Positives = 35/95 (36%), Gaps = 19/95 (20%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G L A G SG G GE + GPP GPAG P AP +
Sbjct: 665 GDLGAPGPSGARGERGFPGERG------VQGPP---------GPAG--PRGANGAPGNDG 707
Query: 687 MGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
GA G +Q A G+Q G G G L G
Sbjct: 708 AKGDAGAPGAPGSQGAPGLQ--GMPGERGAAGLPG 740
Score = 30.4 bits (67), Expect = 6.0
Identities = 30/101 (29%), Positives = 34/101 (33%), Gaps = 15/101 (14%)
Query: 625 LLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSS 684
L GQ RG G G G+ + A GPP GP G P LA P
Sbjct: 963 LPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPP---------GPMG--PPGLAGPPGE 1011
Query: 685 SSMGEGPGAAGGRFTQAARGMQ----RAGPGGRDGGQSLRG 721
S PGA G + G + GP G G G
Sbjct: 1012 SGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG 1052
Score = 30.0 bits (66), Expect = 7.9
Identities = 42/159 (26%), Positives = 52/159 (32%), Gaps = 15/159 (9%)
Query: 160 GGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRG 219
GG A + E+S+ + + S R G PGP + P G G G
Sbjct: 156 GGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASG 215
Query: 220 KRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCP----HR 275
RG P + + A P P P AR A P HR
Sbjct: 216 PMGPRGPPGPPGK----NGDDGEAGKPGRPGERGPPG---PQGARGLPGTAGLPGMKGHR 268
Query: 276 A-GGADGV-GSHGARAP-GE-GSAGSGTERVELGPHVRP 310
G DG G G P GE GS G ++GP P
Sbjct: 269 GFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLP 307
Score = 30.0 bits (66), Expect = 7.9
Identities = 26/89 (29%), Positives = 31/89 (34%), Gaps = 4/89 (4%)
Query: 633 GCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEGPG 692
G G AG V G PG P S + GP+G P GP
Sbjct: 950 GPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPP 1009
Query: 693 AAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
GR + A G + G GRDG +G
Sbjct: 1010 GESGR--EGAPGAE--GSPGRDGSPGAKG 1034
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 55.1 bits (131), Expect = 2e-07
Identities = 68/258 (26%), Positives = 88/258 (34%), Gaps = 28/258 (10%)
Query: 56 RVVGRPGNSGGRRRA--GNRAWGSGRR--GKSRRSRGPGPWPAGSGGPRCPSAPSDGVRR 111
R G +SG R + G WGS +R G +RS G P + P P PS R
Sbjct: 287 RKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGGRPGSAHSP--PDKPSSPSPR 344
Query: 112 CPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSL 171
A AA T S SS+ G G G G + +AS+
Sbjct: 345 VRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAG-GAGRRRRRRRRRRRSRSSASAP 403
Query: 172 SERSSERVE-------------LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPR 218
R R +S +D R A G P PG G+ RP
Sbjct: 404 RRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPP 463
Query: 219 GKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQR--------RRA 270
RPA P + R P +S + P P + SS PS +RS+ R+
Sbjct: 464 RARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSRS 523
Query: 271 PCPHRAGGADGVGSHGAR 288
P P + D G AR
Sbjct: 524 PSPKKPLSRDKDGEGRAR 541
Score = 49.7 bits (117), Expect = 1e-05
Identities = 80/320 (25%), Positives = 109/320 (34%), Gaps = 66/320 (20%)
Query: 63 NSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVT 122
+SG RR+ +R+ S + K + P G R S G P L++H
Sbjct: 215 DSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPG--RRSHRHSSGSSHSPSLSSH---- 268
Query: 123 WVGVSDWRGSFLKLSSSRSTRGLVLGE------------------------GVGVGAGGE 158
SD R S +LS G G G G +G
Sbjct: 269 ---YSDSR-SPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAH 324
Query: 159 GGGEGAAGAASSLSERSSERV--ELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLR 216
GG G+A + S RV + + R E PR P+S R AGG
Sbjct: 325 GGRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAG 384
Query: 217 PRGKRPARGKK----------------RPSSQRRCS-SPSAARASATSAPRPTAPSSVAQ 259
R +R R ++ RP+ R S S S AR+S+ S AP +
Sbjct: 385 RRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPE 444
Query: 260 PSSARSQ-------RRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPF- 311
P S R + R P A + G+HG R EG + S + GPH R +
Sbjct: 445 PGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSP----GPHPRSWS 500
Query: 312 -FLPPTSSSFFGGPPRLHVP 330
P+ S R H P
Sbjct: 501 SSRSPSKSRSRSAEKRPHSP 520
Score = 45.1 bits (105), Expect = 2e-04
Identities = 70/278 (25%), Positives = 89/278 (32%), Gaps = 80/278 (28%)
Query: 69 RAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSD 128
R G A G+GRR + RR R A SAP RR PR
Sbjct: 375 RGGRAAGGAGRRRRRRRRRRRSRSSA--------SAPRRRGRRRPRPAPP---------- 416
Query: 129 WRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDS 188
RGS LS +RS+ G G GA G G G+ +R+ ER S
Sbjct: 417 -RGSSRSLSRARSSSD----SGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTS 471
Query: 189 DTRVAEGARPRP-GPTSSRRPWGR----AGGLRPRGKRPARGKKRPSSQRRCSSPSA--- 240
+ A G R P G +SSR P + P R +KRP S R SP
Sbjct: 472 PSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLS 531
Query: 241 -----------ARASATSA--------------------------------------PRP 251
+ A AT A P P
Sbjct: 532 RDKDGEGRARHSEAEATRARRRSRSYSPIRKRRRDSPSFMEPRRITSARKRPIPYYRPSP 591
Query: 252 TAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARA 289
++ SS + R+P P + G+ SHG R+
Sbjct: 592 SSSSSCLSSDYSTRSHSRSPSPGHSHGSYSSRSHGTRS 629
Score = 32.0 bits (71), Expect = 2.1
Identities = 37/153 (24%), Positives = 58/153 (37%), Gaps = 18/153 (11%)
Query: 162 EGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKR 221
E + G++S L ++ + + D DS +R R R + +R RP +
Sbjct: 190 ECSCGSSSPLRKKKKSVKKHRRDRSDSGSR--RKRRHRSRSSKCKRKEKNKEKKRPHTES 247
Query: 222 PARGKKRPSSQRRCSSPSAARASATSAPRPTAP---SSVAQPSSARSQRRRAPCP----- 273
P R R SS S ++ S + +P +P + S RS R+P P
Sbjct: 248 PGRRSHRHSSGSSHSPSLSSHYSDSRSPSRLSPKHRDEGRKTGSQRSSGSRSPSPSGGSG 307
Query: 274 -----HRAGGADGVGSHGARAPGEGSAGSGTER 301
G G+HG R GSA S ++
Sbjct: 308 WGSPQRNGGSGQRSGAHGGR---PGSAHSPPDK 337
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 54.7 bits (130), Expect = 3e-07
Identities = 95/346 (27%), Positives = 112/346 (32%), Gaps = 67/346 (19%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAG 71
G G G G+ GG+ P FQG AG VG+PG G G
Sbjct: 529 GAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGE--------VGKPGERGLHGEFG 580
Query: 72 --NRAWGSGRRGKSRRSRGPGPW-PAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSD 128
A G RG S GP P GS GP P P DG + P + AV G S
Sbjct: 581 LPGPAGPRGERGPPGESGAAGPTGPIGSRGPSGPPGP-DGNKGEPGVVG--AVGTAGPSG 637
Query: 129 WRGSFLKLSSSRSTRGLVLGEGVG--VGAGGEGGGEGAAGAASSLSERSSERVELQSDTD 186
G L R G+ G+G G GE G G GA
Sbjct: 638 PSG----LPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGA------------------- 674
Query: 187 DSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASAT 246
R A GA PGP + G AG P G RG + + P+ A
Sbjct: 675 ----RGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAG 730
Query: 247 SAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADG----VGSHGARAPGEGSAGSGTERV 302
+A +P A R A P G G VG+ G P G G R
Sbjct: 731 AAGQPGAKG-----------ERGAKGPKGENGVVGPTGPVGAAGPAGP-NGPPGPAGSRG 778
Query: 303 ELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTGLE 348
+ G PP + F G R P P + PP G E
Sbjct: 779 DGG--------PPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKE 816
Score = 44.7 bits (104), Expect = 3e-04
Identities = 79/341 (23%), Positives = 108/341 (31%), Gaps = 55/341 (16%)
Query: 11 LGGPGLSGVSGLLGGEMVSVRPKETSFQGSKR-----GRLAAGRGLGAKVRVVGRPGNSG 65
+G PG G +GL G + + P G G + A GA+ +VG PG +G
Sbjct: 294 VGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGAR-GLVGEPGPAG 352
Query: 66 GRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPS--APSDGVRRCPRLTAHAAVTW 123
+ +GN+ G G S +GP P P+G G R P+ A S G P L
Sbjct: 353 SKGESGNK----GEPG-SAGPQGP-PGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRG 406
Query: 124 VGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEG-----GGEGAAGAASSLSERSSER 178
+ +D R + SR G G AG G G G G+ ++ E
Sbjct: 407 LPGADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEG 466
Query: 179 VELQSDTD----------------------------------DSDTRVAEGARPRPGPTS 204
D D GAR PGP
Sbjct: 467 PVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDG 526
Query: 205 SRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSAR 264
+ G G +G + +G P + PS P A
Sbjct: 527 NNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAG 586
Query: 265 SQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVELG 305
+ R P P +G A G G+R P G G + E G
Sbjct: 587 PRGERGP-PGESGAAGPTGPIGSRGP-SGPPGPDGNKGEPG 625
Score = 44.7 bits (104), Expect = 3e-04
Identities = 81/349 (23%), Positives = 104/349 (29%), Gaps = 65/349 (18%)
Query: 12 GGPGLSGVSGLLG-----GEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGG 66
G G +G +G G GE + PK + G + A G G PG +G
Sbjct: 721 GPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPN----GPPGPAGS 776
Query: 67 RRRAG--------NRAWGSGRRGKSRRSRGPGP-WPAGSGGPRCPSAPSDGVRRCPRLTA 117
R G A +G G S S PGP PAG G R P V R + A
Sbjct: 777 RGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGA 836
Query: 118 HAAVTWVGVSDWRGS--------------------FLKLSSSRSTRGL-----VLGEGVG 152
+ G G L L SR RGL +GE
Sbjct: 837 VGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGLPGSRGERGLPGVAGAVGEPGP 896
Query: 153 VGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARP----------RPGP 202
+G G G G GA S + + +D +P GP
Sbjct: 897 LGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGP 956
Query: 203 TSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSS 262
+ G G + P GK RG+ PS A A P+ P +
Sbjct: 957 VGAAGAPGPHGPVGPAGKHGNRGETGPSG-------PVGPAGAVGPRGPSGPQGIRGDKG 1009
Query: 263 ARSQRRRAPCPHRAG-----GADGVGSHGARAPGEGSAGSGTERVELGP 306
++ P G G G+ H GS G R GP
Sbjct: 1010 EPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGP 1058
Score = 43.9 bits (102), Expect = 5e-04
Identities = 81/314 (25%), Positives = 103/314 (32%), Gaps = 47/314 (14%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQG--SKRGRLAAGRGLGAKVR--VVGRPGNSGGR 67
G PG GV G G + P +T +G +RGR+ A GA+ VG G +G
Sbjct: 190 GQPGAPGVKGEPGAPGENGTPGQTGARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPI 249
Query: 68 RRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRC---------PSAPSDGVRRCPRLTAH 118
AG + K PAG GPR P P A
Sbjct: 250 GSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAK 309
Query: 119 AAVTWVGVSDWRG--------SFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASS 170
A GV+ G + + + RGLV GE G+ GE G +G G+A
Sbjct: 310 GAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLV-GEPGPAGSKGESGNKGEPGSAGP 368
Query: 171 LSERSSERVELQ----SDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGK 226
E + + + G R PG GRAG + P G R A G
Sbjct: 369 QGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASG- 427
Query: 227 KRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPC----PHRAGGADG- 281
P+ R A RP P + S P P G DG
Sbjct: 428 -----------PAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGR 476
Query: 282 ---VGSHGARA-PG 291
+G GAR PG
Sbjct: 477 PGPIGPAGARGEPG 490
Score = 39.3 bits (90), Expect = 0.013
Identities = 61/225 (27%), Positives = 73/225 (32%), Gaps = 49/225 (21%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAG 71
G PG G G +G V+ P E G+ GR G+PG+ G R G
Sbjct: 901 GPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRD--------GQPGHKGERGYPG 952
Query: 72 N-----RAWGSGRRGK--------SRRSRGP-GP-WPAGSGGPRCPSAPSDGVRRCPRLT 116
N A G G +R GP GP PAG+ GPR PS P
Sbjct: 953 NIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQ---------- 1002
Query: 117 AHAAVTWVGVSDWRGSFLKLSSSRSTRGL--VLGEGVGVGAGGEGGGEGAAGAASSLSER 174
G+ +G + RGL + G G G G G GA S+
Sbjct: 1003 --------GIRGDKGE----PGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPA 1050
Query: 175 SSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRG 219
S D R G GP R P G G P G
Sbjct: 1051 GPRGPAGPSGPAGKDGRT--GHPGTVGPAGIRGPQGHQGPAGPPG 1093
Score = 33.9 bits (76), Expect = 0.55
Identities = 29/94 (30%), Positives = 37/94 (39%), Gaps = 10/94 (10%)
Query: 622 EGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATA 681
E ++G G +G AG + G G PG A +TGP G P ++
Sbjct: 749 ENGVVGPTGPVGAAGPAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPG--PSGISGP 806
Query: 682 PSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDG 715
P PG AG + RG Q GP GR G
Sbjct: 807 PGP------PGPAGKEGLRGPRGDQ--GPVGRTG 832
Score = 32.7 bits (73), Expect = 1.2
Identities = 30/106 (28%), Positives = 40/106 (37%), Gaps = 11/106 (10%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAP--SS 684
G++ G +G AG AG+ GP + TGP G + P +
Sbjct: 715 GEVGPAGPNGFAGPAGAAGQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGPPGPA 774
Query: 685 SSMGEG--------PGAAGGRFTQAARGMQ-RAGPGGRDGGQSLRG 721
S G+G PGAAG G+ GP G G + LRG
Sbjct: 775 GSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRG 820
Score = 31.6 bits (70), Expect = 2.7
Identities = 26/110 (23%), Positives = 36/110 (32%), Gaps = 14/110 (12%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G +G G +G G + A + PGPP L + G G + P S
Sbjct: 364 GSAGPQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSR 423
Query: 687 MGEGPGAAGGRFTQAARGMQ--------------RAGPGGRDGGQSLRGL 722
GP G A R + GP G++G L G+
Sbjct: 424 GASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGI 473
Score = 30.4 bits (67), Expect = 6.0
Identities = 31/109 (28%), Positives = 37/109 (33%), Gaps = 12/109 (11%)
Query: 623 GDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTA------VQTGPAG---- 672
G+ Q + +G G G + G A PGP A QTGPAG
Sbjct: 75 GNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARGP 134
Query: 673 VVPHSLATAPSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
P A PG G Q ARG G G G + +RG
Sbjct: 135 AGPPGKAGEDGHPGKPGRPGERGVVGPQGARGF--PGTPGLPGFKGIRG 181
Score = 30.4 bits (67), Expect = 6.0
Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 3/85 (3%)
Query: 632 RGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEGP 691
+G +G AG G D + A PGP + + GP G P P S
Sbjct: 510 KGHAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPG--PPGFQGLPGPSGPAGEV 567
Query: 692 GAAGGRFTQAARGMQ-RAGPGGRDG 715
G G R G+ AGP G G
Sbjct: 568 GKPGERGLHGEFGLPGPAGPRGERG 592
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 54.3 bits (129), Expect = 4e-07
Identities = 88/326 (26%), Positives = 120/326 (36%), Gaps = 54/326 (16%)
Query: 53 AKVRVVGRPGNSGGRRRAGNRAWGSG---------RRGKSRR----SRGPGPWPAGSG-G 98
A +RV+G G + GR+ RA G G R G +R SR P P SG G
Sbjct: 42 AALRVLGAAG-AVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRG 100
Query: 99 PRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGE 158
R P A + + T G +G L++S+ + E A
Sbjct: 101 ERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKG--LRISAEETVARGKATEAPKRSALSA 158
Query: 159 GGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRP------------------ 200
G +G + R + T+ R A ARPRP
Sbjct: 159 GARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTT 218
Query: 201 --GPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVA 258
P + RRP GGL+ RPA + SS SSP+ + SA PR A S
Sbjct: 219 EPSPAARRRP-SAGGGLQ----RPA-SRSLSSSATPLSSPARSGPSARGTPRAPAHPSQP 272
Query: 259 QPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLPPTSS 318
+P ++ R P R A +G + +P + SGT+ RP +PP +
Sbjct: 273 KPKGLQALRPPQVTPPRKDAAPALGPLSS-SPLATPSPSGTK-------ARP--VPPPDN 322
Query: 319 SFFGGPPRLHVPLPPLLLPLLLPPQS 344
+ P L P PPL PL L P S
Sbjct: 323 AATPLPATL-PPSPPLATPLPLAPPS 347
Score = 35.4 bits (80), Expect = 0.19
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 89 PGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLG 148
PGP P SGG A + R P+ A + + + + S ++ SR T L
Sbjct: 993 PGPSPGTSGGKAAAGAGAGASSRSPK---QARLGELPLGALQASVVQHLLSR-TLLLAAA 1048
Query: 149 EGVGVGA-GGEGGGEG---AAGAASSLSERSSER-VELQSDTDDSDTRVAEGARPRPGPT 203
EG G+ GG GG EG GA ++LS+ R EL S D+S + P
Sbjct: 1049 EGAAGGSGGGPGGAEGGGVTGGARAALSDAELGRWAELLSPLDESRASITSVTSFSPDDV 1108
Query: 204 SS 205
+S
Sbjct: 1109 AS 1110
Score = 30.4 bits (67), Expect = 6.0
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G L+ G +GG AG A A+ P L + A VV H L+ +
Sbjct: 989 GALDPGPSPGTSGGKAAAGAGA-GASSRSPKQARLGELPLGALQASVVQHLLSR---TLL 1044
Query: 687 MGEGPGAAGGRFTQAARGMQRAGPGGRDGG 716
+ GAAGG GPGG +GG
Sbjct: 1045 LAAAEGAAGG---------SGGGPGGAEGG 1065
>gi|223633935 hypothetical protein LOC254427 [Homo sapiens]
Length = 435
Score = 53.9 bits (128), Expect = 5e-07
Identities = 74/240 (30%), Positives = 89/240 (37%), Gaps = 67/240 (27%)
Query: 68 RRAGNRA------WGSGRRGKSR-------RSRGPGPWPAGSGGPRCPSAPS-----DGV 109
R AGN A + GR G+ R RS PGP P+ P+ P PS +G
Sbjct: 204 RMAGNEALSPTSPFREGRPGEWRTPAARGPRSGDPGPGPSHPAQPKAPRFPSNIIVTNGA 263
Query: 110 RRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAAS 169
R PR T A V V + R L + G A G+ GEGA G S
Sbjct: 264 AREPRRTLSRAA--VSVQERRAQVL---------ATIHGHAGAFPAAGD-AGEGAPGGGS 311
Query: 170 SLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRP 229
S RVA G R PGP S RAGG PRG PA P
Sbjct: 312 ------------------SPERVARG-RGLPGPAESL----RAGGQAPRG--PALANGFP 346
Query: 230 SSQRRCSSPSAARASATSA----PRPTAPSSVA--------QPSSARSQRRRAPCPHRAG 277
S+ S ++ A A + P P PS+ A QP+ A+ RR P G
Sbjct: 347 SAHEALKSAPSSFAPAGKSLCFRPGPALPSTRARQSFPGPRQPNGAQDWRRADSLPRPQG 406
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 53.9 bits (128), Expect = 5e-07
Identities = 85/327 (25%), Positives = 116/327 (35%), Gaps = 51/327 (15%)
Query: 53 AKVRVVGRPGNSGGRRRAGNRAWGSG---------RRGKSRRSRGPGPWPAGSGGPRCPS 103
A +RV+G G + GR+ RA G G R G +R SR P A G R P
Sbjct: 42 AALRVLGAAG-AVGRKPLAERAGGIGGATIPESAPRAGPTRTSRPP----ASGRGERAPP 96
Query: 104 APSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEG 163
A + + T G +G L++S+ + E A G
Sbjct: 97 AKNTSPGPVSSPGRASGTTRPGPLGQKG--LRISAEETVARGKATEAPKRSALSAGARRD 154
Query: 164 AAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRP--------------------GPT 203
+G + R + T+ R A ARPRP P
Sbjct: 155 TSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPA 214
Query: 204 SSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSA 263
+ RRP GGL+ RPA + SS SSP+ + SA PR A S +P
Sbjct: 215 ARRRP-SAGGGLQ----RPA-SRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGL 268
Query: 264 RSQRRRAPCPHRAGGADGVG---SHGARAPGEGSAGSGTERVELGPHVRPFFLPPTSSSF 320
++ R P R A +G S P + S + L P PP+ ++
Sbjct: 269 QALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATT 328
Query: 321 FGGPPRLH-----VPLPPLLLPLLLPP 342
G P L +P PP L PL PP
Sbjct: 329 SLGSPTLQATHSFLPSPP-LSPLATPP 354
Score = 37.7 bits (86), Expect = 0.038
Identities = 106/436 (24%), Positives = 136/436 (31%), Gaps = 85/436 (19%)
Query: 14 PGLSGVSGL-LGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRR-RAG 71
PG G GL + E R K T + KR L+AG G P + RR RA
Sbjct: 117 PGPLGQKGLRISAEETVARGKAT--EAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAA 174
Query: 72 NRAWGSGRRGKSRRSRGPGPWP---AGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSD 128
G R S R R P P S + PS RR P
Sbjct: 175 GTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSA------------- 221
Query: 129 WRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDS 188
G L+ +SRS +G G A A S + LQ+
Sbjct: 222 --GGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKG----LQALRPPQ 275
Query: 189 DTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSA 248
T + A P GP SS + P P PS Q S P+ + AT++
Sbjct: 276 VTPPRKDAAPALGPLSS------SPLATPSPSAPPSPSAPPSLQTLPSPPATPPSQATTS 329
Query: 249 -----------------------PRPTAPSSVA---------QPSSARSQRRRAPCPHRA 276
P P AP ++A P+S P P
Sbjct: 330 LGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQ-- 387
Query: 277 GGADGVGSHGARAPGEGSAGSGTERV---ELGPHVRPFFLPPTSSSFFGGPPRLHVP--- 330
+ + H +AP + P V P PP+ + P L VP
Sbjct: 388 -APNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSP 446
Query: 331 --LPPLLLPLLLPPQSTGLEQAAALEVAL-------ALADPGL--LLAQLAHEQVQLPFH 379
PP+ PPQ+ A L++A ALA P L L + A Q PF
Sbjct: 447 PASPPMSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFS 506
Query: 380 -DVHLTFCQLLLPPPQ 394
L L PPPQ
Sbjct: 507 PSASLPMSPLATPPPQ 522
Score = 35.4 bits (80), Expect = 0.19
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 89 PGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLG 148
PGP P SGG A + R P+ A + + + + S ++ SR T L
Sbjct: 685 PGPSPGTSGGKAAAGAGAGASSRSPK---QARLGELPLGALQASVVQHLLSR-TLLLAAA 740
Query: 149 EGVGVGA-GGEGGGEG---AAGAASSLSERSSER-VELQSDTDDSDTRVAEGARPRPGPT 203
EG G+ GG GG EG GA ++LS+ R EL S D+S + P
Sbjct: 741 EGAAGGSGGGPGGAEGGGVTGGARAALSDAELGRWAELLSPLDESRASITSVTSFSPDDV 800
Query: 204 SS 205
+S
Sbjct: 801 AS 802
Score = 30.4 bits (67), Expect = 6.0
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G L+ G +GG AG A A+ P L + A VV H L+ +
Sbjct: 681 GALDPGPSPGTSGGKAAAGAGA-GASSRSPKQARLGELPLGALQASVVQHLLSR---TLL 736
Query: 687 MGEGPGAAGGRFTQAARGMQRAGPGGRDGG 716
+ GAAGG GPGG +GG
Sbjct: 737 LAAAEGAAGG---------SGGGPGGAEGG 757
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 51.2 bits (121), Expect = 3e-06
Identities = 90/335 (26%), Positives = 111/335 (33%), Gaps = 72/335 (21%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAG 71
G PGL G +GL P E G R A G GRPG G G
Sbjct: 279 GAPGLKGENGL---------PGENGAPGPMGPRGAPGER--------GRPGLPGAAGARG 321
Query: 72 NRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRG 131
N G RG + PGP P +G P P A + VG + G
Sbjct: 322 N----DGARGSDGQPGPPGP-PGTAGFPGSPGAKGE----------------VGPAGSPG 360
Query: 132 SFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTR 191
S + + RG +G GA G G G G+ E +
Sbjct: 361 S----NGAPGQRGEPGPQG-HAGAQGPPGPPGINGSPGGKGEMGPAGIP--------GAP 407
Query: 192 VAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQR-RCSSPSAARASATSAP- 249
GAR PGP + G GG GK A+G+ P +R P A
Sbjct: 408 GLMGARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKD 467
Query: 250 -RPTAPSSVAQPSSARSQRRRAPCPHRAGGADGV-------GSHGARAPG--EGSAGS-G 298
P P + P +A R AP G +G+ G GA P G+AG G
Sbjct: 468 GSPGEPGANGLPGAA--GERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPG 525
Query: 299 TERVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPP 333
+ V GP +R P GGP P PP
Sbjct: 526 RDGVPGGPGMRGMPGSP------GGPGSDGKPGPP 554
Score = 49.7 bits (117), Expect = 1e-05
Identities = 84/343 (24%), Positives = 116/343 (33%), Gaps = 48/343 (13%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGR-----LAAGRGLGAKVRVVGRPGNSGG 66
GGPG+ G+ G GG +P QG + GR + RG + G GN G
Sbjct: 531 GGPGMRGMPGSPGGPGSDGKPGPPGSQG-ESGRPGPPGPSGPRGQPGVMGFPGPKGNDGA 589
Query: 67 RRRAGNRA--WGSGRRGKSRRS-----RGPGPWPAGSGGPRCPSAP--SDGVRRCPRLTA 117
+ G R G G +G ++ +GP P P G GG + + P G++ P
Sbjct: 590 PGKNGERGGPGGPGPQGPPGKNGETGPQGP-PGPTGPGGDKGDTGPPGPQGLQGLPGTGG 648
Query: 118 HAAVTW-------------VGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAG--GEGGGE 162
G +G R GL G+ GAG G GG+
Sbjct: 649 PPGENGKPGEPGPKGDAGAPGAPGGKGD-AGAPGERGPPGLAGAPGLRGGAGPPGPEGGK 707
Query: 163 GAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRP 222
GAAG + ++ G PGP + G GG G
Sbjct: 708 GAAGPPGPPGAAGTPGLQGMPG--------ERGGLGSPGPKGDK---GEPGGPGADGVPG 756
Query: 223 ARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGV 282
G + P+ P+ P P +A P + +R P AG
Sbjct: 757 KDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLP-GIAGPRGSPGERGETGPPGPAGFPGAP 815
Query: 283 GSHGARAPGEGSAGSGTERVELGPHVRPFFLPPTSSSFFGGPP 325
G +G G+G G+ E+ E GP P P S GPP
Sbjct: 816 GQNG-EPGGKGERGAPGEKGEGGP---PGVAGPPGGSGPAGPP 854
Score = 45.8 bits (107), Expect = 1e-04
Identities = 80/311 (25%), Positives = 93/311 (29%), Gaps = 41/311 (13%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAG----RGLGAKVRVVGRPGNSGGR 67
G PGL+G GL GG G + G+ AAG G + G PG GG
Sbjct: 684 GPPGLAGAPGLRGG---------AGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGG- 733
Query: 68 RRAGNRAWGSGRRGKSRRSRGPG----PWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTW 123
G +G GPG P G GP P P + A
Sbjct: 734 ------LGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGL 787
Query: 124 VGVSDWRGSFLKLSSSRSTRGLVLGEGV--GVGAGGEGGGEGAAGAASSLSERSSERVEL 181
G++ RGS R G G G GE GG+G GA E V
Sbjct: 788 PGIAGPRGS----PGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGV-- 841
Query: 182 QSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAA 241
+ G PGP + G GG G ARG P P
Sbjct: 842 ------AGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGP 895
Query: 242 RASATSAPRPTAPSSVAQPSS--ARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGT 299
S P + P S + A P G G GA P G AG
Sbjct: 896 SGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGP-LGIAGITG 954
Query: 300 ERVELGPHVRP 310
R GP P
Sbjct: 955 ARGLAGPPGMP 965
Score = 42.0 bits (97), Expect = 0.002
Identities = 69/292 (23%), Positives = 88/292 (30%), Gaps = 55/292 (18%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAG-RGLGAKVRVVGRPGNSGGRRRA 70
G PG+ G G G + V + G R G +GL G PG G
Sbjct: 960 GPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSD 1019
Query: 71 G--NRAWGSGRRGKSRRSRGPG-PWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVS 127
G R G +G + PG P G GP P P+ G S
Sbjct: 1020 GLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPA------------------GKS 1061
Query: 128 DWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDD 187
RG G GA G G GA G ++ +T +
Sbjct: 1062 GDRGE--------------SGPAGPAGAPGPAGSRGAPGPQGPRGDK--------GETGE 1099
Query: 188 SDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA--ARASA 245
+G R PG G G P G++ A G P+ R PS +
Sbjct: 1100 RGAAGIKGHRGFPGNP------GAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGT 1153
Query: 246 TSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGS 297
+ P P P P R +R P G G GA P G G+
Sbjct: 1154 SGHPGPIGPPG---PRGNRGERGSEGSPGHPGQPGPPGPPGAPGPCCGGVGA 1202
Score = 41.6 bits (96), Expect = 0.003
Identities = 80/313 (25%), Positives = 95/313 (30%), Gaps = 56/313 (17%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAG-RGLGAKVRVVGRPGNSGGRRRA 70
G PG G +G G P + G K R A G +G G V G PG SG
Sbjct: 795 GSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPP 854
Query: 71 GNRAWGSGRRGKSRRSRGPG----------PWPAGSGGPRCPSAPSD--GVRRCPRLTAH 118
G + G +G+ GPG P P GS G P PS G P +
Sbjct: 855 GPQ----GVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGN 910
Query: 119 AAVTWV-GVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSE 177
GVS +G + GE GA G G G G A
Sbjct: 911 TGAPGSPGVSGPKGDAGQP-----------GEKGSPGAQGPPGAPGPLGIAG-------- 951
Query: 178 RVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSS 237
GAR GP P G G +G+ G S +R
Sbjct: 952 ---------------ITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPG 996
Query: 238 PSAARASATSAPRPTA---PSSVAQPSSARSQRRRAPCPHRAG-GADGVGSHGARAPGEG 293
P A +A P P S P S + GA G H G
Sbjct: 997 PQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVG 1056
Query: 294 SAGSGTERVELGP 306
AG +R E GP
Sbjct: 1057 PAGKSGDRGESGP 1069
Score = 38.5 bits (88), Expect = 0.022
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 626 LGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSS 685
+G + G +G G G HA A PGPP ++ + G G P + AP
Sbjct: 353 VGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMG--PAGIPGAPGLM 410
Query: 686 SMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
PG AG RG AG G++G + G
Sbjct: 411 GARGPPGPAGANGAPGLRG--GAGEPGKNGAKGEPG 444
Score = 35.4 bits (80), Expect = 0.19
Identities = 60/224 (26%), Positives = 75/224 (33%), Gaps = 20/224 (8%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGR----GLGAKVRVVGRPGNSGGR 67
G PG G G G P GS G+ G G + G PG +G
Sbjct: 363 GAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGAN 422
Query: 68 RRAGNRAWGSGRRGKSRRSRGPGP-WPAGSGG-PRCPSAPS-DGVRRCPRLTAHAAVTWV 124
G R G+G GK+ PGP G G P P A DG P +
Sbjct: 423 GAPGLRG-GAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLP-- 479
Query: 125 GVSDWRGSFLKLSSSRSTRGLVLGEGVG--VGAGGEGGGEGAAGAASSLSERSSERVELQ 182
G + RG+ RG G+ G GE G G AG + E + V
Sbjct: 480 GAAGERGA-------PGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGG 532
Query: 183 SDTDDSD-TRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARG 225
+ G+ +PGP S+ GR G P G R G
Sbjct: 533 PGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPG 576
Score = 34.3 bits (77), Expect = 0.42
Identities = 33/110 (30%), Positives = 38/110 (34%), Gaps = 19/110 (17%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G+ RG GG G G++ PGP TGP G P L P +
Sbjct: 591 GKNGERGGPGGPGPQGPPGKNGETGPQGPPGPTGPGGDKGDTGPPG--PQGLQGLPGTGG 648
Query: 687 -MGE--------------GPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
GE PGA GG+ A G GP G G LRG
Sbjct: 649 PPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPG--ERGPPGLAGAPGLRG 696
Score = 33.1 bits (74), Expect = 0.93
Identities = 26/90 (28%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G+ A G G AG G A +PG + GPAG P A P
Sbjct: 471 GEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAG--PRGAAGEPGRDG 528
Query: 687 MGEGPGAAGGRFTQAARGMQ-RAGPGGRDG 715
+ GPG G + G + GP G G
Sbjct: 529 VPGGPGMRGMPGSPGGPGSDGKPGPPGSQG 558
Score = 33.1 bits (74), Expect = 0.93
Identities = 30/93 (32%), Positives = 33/93 (35%), Gaps = 13/93 (13%)
Query: 633 GCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEGPG 692
G GG G GE + GPP S A GP GV GPG
Sbjct: 819 GEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGV--------KGERGSPGGPG 870
Query: 693 AAGGRFTQAARGMQRAGPGGRDGGQSLRGLGSS 725
AAG ARG+ GP G +G G S
Sbjct: 871 AAG---FPGARGL--PGPPGSNGNPGPPGPSGS 898
Score = 32.0 bits (71), Expect = 2.1
Identities = 29/113 (25%), Positives = 44/113 (38%), Gaps = 5/113 (4%)
Query: 611 YLTFTLKLQLVEGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGP 670
Y ++ +K + G L G G G G +G + GPP A +GP
Sbjct: 155 YDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGP 214
Query: 671 AGVVPHSLATAPSSSSMGEG--PGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
G P ++ + + GE PG G R G++ GP G G ++G
Sbjct: 215 PG-PPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIK--GPAGIPGFPGMKG 264
Score = 32.0 bits (71), Expect = 2.1
Identities = 30/103 (29%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVV-------PHSLA 679
G +G G GG AG A LPGPP + GP+G P
Sbjct: 855 GPQGVKGERGSPGGPGAAG---FPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNT 911
Query: 680 TAPSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRGL 722
AP S + G AG + + G Q GP G G + G+
Sbjct: 912 GAPGSPGVSGPKGDAGQPGEKGSPGAQ--GPPGAPGPLGIAGI 952
Score = 30.4 bits (67), Expect = 6.0
Identities = 25/84 (29%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 633 GCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVV-PHSLATAPSSSSMGEGP 691
G GG G G PGPP S Q G G P AP + GP
Sbjct: 540 GSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP 599
Query: 692 GAAGGRFTQAARGMQRAGPGGRDG 715
G G + G GP G G
Sbjct: 600 GGPGPQGPPGKNG--ETGPQGPPG 621
Score = 30.4 bits (67), Expect = 6.0
Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 11/101 (10%)
Query: 632 RGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVV-PHSLATAPSSSSMGEG 690
RG +G G AG+ G PG P ++ G G P A P +
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGE 820
Query: 691 PGAAGGRFTQAARG----------MQRAGPGGRDGGQSLRG 721
PG G R +G +GP G G Q ++G
Sbjct: 821 PGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKG 861
Score = 30.0 bits (66), Expect = 7.9
Identities = 28/96 (29%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G+ + G G G G A L GPP + GP GV S + S
Sbjct: 930 GEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLS 989
Query: 687 MGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRGL 722
GP G A AG GRDG GL
Sbjct: 990 GERGPPGPQGLPGLAG----TAGEPGRDGNPGSDGL 1021
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 50.8 bits (120), Expect = 4e-06
Identities = 82/314 (26%), Positives = 103/314 (32%), Gaps = 39/314 (12%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGR----GLGAKVRVVGRPGNSGGR 67
G PG +G G G + E F G+ + GR G + G PG G R
Sbjct: 1275 GLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPR 1334
Query: 68 RRAGNRA-----WGSGRRGKSRRSRGPG-------PWPAGSGGPRCPSAPSDGVRRCPRL 115
G R G G+ GPG P P+G GPR P G R P L
Sbjct: 1335 GDPGERGPRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLG-DPGPRGPPGL 1393
Query: 116 TAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERS 175
A G RG G+ GE G G G +G G E+
Sbjct: 1394 PGTAMKGDKGDRGERG-----PPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEK- 1447
Query: 176 SERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKR---PARGKKRPSSQ 232
D++D A G +PG + P G G + P+G R G+ +
Sbjct: 1448 -------GDSEDG----APGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGE 1496
Query: 233 RRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGE 292
R P+ +R A RP A P Q + P R G VG A GE
Sbjct: 1497 RGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGE-PGRPGDPAVVGPAVAGPKGE 1555
Query: 293 -GSAGSGTERVELG 305
G G R G
Sbjct: 1556 KGDVGPAGPRGATG 1569
Score = 43.1 bits (100), Expect = 0.001
Identities = 86/333 (25%), Positives = 110/333 (33%), Gaps = 49/333 (14%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSK-------RGRLAAGRGLGAKVRVVGRPGNS 64
G PG+ G GL G P T G +G A GL + VG PG
Sbjct: 2272 GSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGGLAGDL--VGEPGAK 2329
Query: 65 GGRRRAGNRAWGSGRRGKSRRSRGPG----------PWPAG---------SGGPRCPSAP 105
G R G R G +G++ R+ PG P P G G P P P
Sbjct: 2330 GDRGLPGPR----GEKGEAGRAGEPGDPGEDGQKGAPGPKGFKGDPGVGVPGSPGPPGPP 2385
Query: 106 S-DGVRRCPRLT-AHAAVTWVGVSDWRGSFLKL--SSSRSTRGLVLGEGVG--VGAGGEG 159
G P L A V + G + RG + S R G EG+ +G G
Sbjct: 2386 GVKGDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPP 2445
Query: 160 GGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRG 219
G G GA+ ++ V L + R G R G P G G RG
Sbjct: 2446 GSVGPPGASGLKGDKGDPGVGLPGPRGE---RGEPGIRGEDGRPGQEGPRGLTGPPGSRG 2502
Query: 220 KRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGA 279
+R +G + + SA P P R R G
Sbjct: 2503 ERGEKGDVGSAGLKGDKGDSAVILG------PPGPRGAKGDMGERGPRGLDGDKGPRGDN 2556
Query: 280 DGVGSHGARA-PGE-GSAGSGTERVELGPHVRP 310
G G++ PG+ GSAG R LGP +P
Sbjct: 2557 GDPGDKGSKGEPGDKGSAGLPGLRGLLGPQGQP 2589
Score = 39.3 bits (90), Expect = 0.013
Identities = 84/326 (25%), Positives = 105/326 (32%), Gaps = 53/326 (16%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAG 71
G PG G GL GE P + + K G + G PG +GG AG
Sbjct: 2009 GDPGPQGPPGLALGERGPPGPSGLAGEPGKPG-------------IPGLPGRAGGVGEAG 2055
Query: 72 -----NRAWGSGRRGKSRRSRGPG-PWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVG 125
G RG+ R PG P G GP P D P L+ G
Sbjct: 2056 RPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVD--EPGPGLSGEQGPP--G 2111
Query: 126 VSDWRGSFLKLSSSRSTRGLVLGEGV-GV-GAGGEGGGEGAAGAASSLSERSSERVE--- 180
+ +G S +G GV G+ G GE G G G ER E
Sbjct: 2112 LKGAKGE----PGSNGDQGPKGDRGVPGIKGDRGEPGPRGQDGNPGLPGERGMAGPEGKP 2167
Query: 181 -LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPS 239
LQ G PGP + G AG P G + G+ P R + P+
Sbjct: 2168 GLQGPRGPPG---PVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGPPG-RGLTGPT 2223
Query: 240 AARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPG-EGSAGSG 298
A P P PS + P + P G G G APG +G++G
Sbjct: 2224 ----GAVGLPGPPGPSGLVGPQGS---------PGLPGQVGETGKPG--APGRDGASGKD 2268
Query: 299 TERVELGPHVRPFFLPPTSSSFFGGP 324
+R G P P GP
Sbjct: 2269 GDRGSPGVPGSPGLPGPVGPKGEPGP 2294
Score = 38.9 bits (89), Expect = 0.017
Identities = 82/316 (25%), Positives = 101/316 (31%), Gaps = 60/316 (18%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAG 71
G PG G GL G P E +G K A+GR GR G G R
Sbjct: 1830 GKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGR--------EGRDGPKGER---- 1877
Query: 72 NRAWGSGRRGKSRRSRGPG-PWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWR 130
G G PG P P G G P P G R
Sbjct: 1878 ------GAPGILGPQGPPGLPGPVGPPGQGFPGVPGG----------------TGPKGDR 1915
Query: 131 GSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDT 190
G + S+ +GL G+ G + A + E VE ++ S
Sbjct: 1916 GE----TGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFL 1971
Query: 191 RVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPR 250
V E R G + + P G+ G + G+R +G R P A
Sbjct: 1972 PVPERRRGPKGDSGEQGPPGKEGPIGFPGERGLKG------DRGDPGPQGPPGLALGERG 2025
Query: 251 PTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGE-GSAGSGTERVELGPHVR 309
P PS +A + + P G A GVG G PGE G G ER E G
Sbjct: 2026 PPGPSGLA------GEPGKPGIPGLPGRAGGVGEAG--RPGERGERGEKGERGEQGRDGP 2077
Query: 310 PFFLPPTSSSFFGGPP 325
P LP T GPP
Sbjct: 2078 P-GLPGTP-----GPP 2087
Score = 35.8 bits (81), Expect = 0.14
Identities = 60/268 (22%), Positives = 85/268 (31%), Gaps = 63/268 (23%)
Query: 12 GGPGLSGVSGLLG--GEMVSVRPKETSFQGSKRGR--LAAGRGLGAKVRVVGRPGNSGGR 67
G PG GV G+ G G++ + P+ + +G L +G + GRPG +G +
Sbjct: 2599 GSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDGEKGDKGEAGPPGRPGLAGHK 2658
Query: 68 RRAGN-----RAWGSGRRG----KSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAH 118
G ++ G+ G K R P P G G +
Sbjct: 2659 GEMGEPGVPGQSGAPGKEGLIGPKGDRGFDGQPGPKGDQGEK------------------ 2700
Query: 119 AAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSER 178
R T G+ G G G G G G S+ R E
Sbjct: 2701 -------------------GERGTPGI----GGFPGPSGNDGSAGPPGPPGSVGPRGPEG 2737
Query: 179 VELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKR--------PARGKKRPS 230
++ Q GA PG R GR G PRG++ RG R
Sbjct: 2738 LQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPAGPRGEKGEAALTEDDIRGFVRQE 2797
Query: 231 SQRRCSSPSAARASATSAPRPTAPSSVA 258
+ C+ AS S P P+ + A
Sbjct: 2798 MSQHCACQGQFIASG-SRPLPSYAADTA 2824
Score = 32.3 bits (72), Expect = 1.6
Identities = 34/98 (34%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGP---PALSNTAVQTGPAGVVPHSLATAPS 683
GQ RG G G GE PGP P + A + G G P L
Sbjct: 1725 GQEGPRGPKGDPGLPGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRG--PPGL---DG 1779
Query: 684 SSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
S + PGAAG A G +AG GRDG LRG
Sbjct: 1780 RSGLDGKPGAAGPSGPNGAAG--KAGDPGRDGLPGLRG 1815
Score = 31.6 bits (70), Expect = 2.7
Identities = 31/116 (26%), Positives = 43/116 (37%), Gaps = 20/116 (17%)
Query: 625 LLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTA---VQTGPAGVVPHSLATA 681
L GQ+ G G G +G+D + +PG P L + GP G ++
Sbjct: 2246 LPGQVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVGL 2305
Query: 682 PSSSS------------MGEGPGAAGGRFTQAARGMQ----RAGPGGRDGGQSLRG 721
P + +GE PGA G R RG + RAG G G +G
Sbjct: 2306 PGAKGEKGAPGGLAGDLVGE-PGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKG 2360
Score = 31.2 bits (69), Expect = 3.5
Identities = 30/102 (29%), Positives = 33/102 (32%), Gaps = 9/102 (8%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVV-------PHSLA 679
G A+G G G G A PG P L + GP G P
Sbjct: 1290 GSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEP 1349
Query: 680 TAPSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
AP GEGPG G + G GP G G RG
Sbjct: 1350 GAPGQVIGGEGPGLPGRKGDPGPSG--PPGPRGPLGDPGPRG 1389
Score = 30.8 bits (68), Expect = 4.6
Identities = 27/97 (27%), Positives = 33/97 (34%), Gaps = 2/97 (2%)
Query: 625 LLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSS 684
L G+ G +G G GE GPP L T GP G P
Sbjct: 2044 LPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPPGPKVSVDEPGPGL 2103
Query: 685 SSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
S PG G + + G Q GP G G ++G
Sbjct: 2104 SGEQGPPGLKGAKGEPGSNGDQ--GPKGDRGVPGIKG 2138
Score = 30.0 bits (66), Expect = 7.9
Identities = 25/84 (29%), Positives = 30/84 (35%), Gaps = 11/84 (13%)
Query: 632 RGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEGP 691
RG G GGH G PG P L+ A GP+G+ T P +
Sbjct: 2173 RGPPGPVGGHGDPGP---------PGAPGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPT 2223
Query: 692 GAAGGRFTQAARGMQRAGPGGRDG 715
GA G G+ GP G G
Sbjct: 2224 GAVGLPGPPGPSGL--VGPQGSPG 2245
Score = 30.0 bits (66), Expect = 7.9
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 2/95 (2%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G L G G G G+ PGP A G G+ P L S
Sbjct: 2389 GDLGLPGLPGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGI-PGPLGPPGPPGS 2447
Query: 687 MGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
+G PGA+G + + G+ GP G G +RG
Sbjct: 2448 VGP-PGASGLKGDKGDPGVGLPGPRGERGEPGIRG 2481
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 50.8 bits (120), Expect = 4e-06
Identities = 58/204 (28%), Positives = 73/204 (35%), Gaps = 21/204 (10%)
Query: 149 EGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPT---SS 205
E + G+G + + S+ RS+ + SD RV G P P P SS
Sbjct: 502 EVISWGSGRQNSPRMGQPGSGSMPSRSTSHTSDFNPNSGSDQRVVNGGVPWPSPCPSPSS 561
Query: 206 RRPWGRAGG---LRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQ--P 260
R P G L PR P R RP S R PS A + AP T P ++ P
Sbjct: 562 RPPSRYQSGPNSLPPRAATPTRPPSRPPS-RPSRPPSHPSAHGSPAPVSTMPKRMSSEGP 620
Query: 261 SSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLPPTSSSF 320
+ +R P HR + G GS SG E V P P +S
Sbjct: 621 PRMSPKAQRHPRNHRV------------SAGRGSISSGLEFVSHNPPSEAATPPVARTSP 668
Query: 321 FGGPPRLHVPLPPLLLPLLLPPQS 344
GG V P L P P+S
Sbjct: 669 SGGTWSSVVSGVPRLSPKTHRPRS 692
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 50.1 bits (118), Expect = 7e-06
Identities = 85/310 (27%), Positives = 99/310 (31%), Gaps = 28/310 (9%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGA--KVRVVGRPGNSGGRRR 69
G G +GV GL GG P T F GS GR+ GA +G PG G
Sbjct: 885 GPHGPNGVPGLKGGRGTQGPPGATGFPGS-AGRVGPPGPAGAPGPAGPLGEPGKEGPPGL 943
Query: 70 AGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPS-DGVRRCPRLTAHAAVTWVGVSD 128
G+ GS R R GP P G P P DG T + VG+
Sbjct: 944 RGDP--GSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAGTTGQRGI--VGMPG 999
Query: 129 WRG--SFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTD 186
RG L T G V G G G G G G+ + E E T
Sbjct: 1000 QRGERGMPGLPGPAGTPGKV-GPTGATGDKGPPGPVGPPGSNGPVGEPGPEGPAGNDGTP 1058
Query: 187 DSDTRVAE-GARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASA 245
D V E G R PGP G G P G G++ R P RA
Sbjct: 1059 GRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGP-PGRAGK 1117
Query: 246 TSAPRPTAPSSVAQPSSARSQRRR--------------APCPHRAGGADGV-GSHGARAP 290
P P P R R + P P+ G+ G+ G G R P
Sbjct: 1118 RGLPGPQGPRGDKGDHGDRGDRGQKGHRGFTGLQGLPGPPGPNGEQGSAGIPGPFGPRGP 1177
Query: 291 GEGSAGSGTE 300
SG E
Sbjct: 1178 PGPVGPSGKE 1187
Score = 40.8 bits (94), Expect = 0.004
Identities = 74/319 (23%), Positives = 106/319 (33%), Gaps = 37/319 (11%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAA----GR-GLGAKVRVVGRPGNSGG 66
G PG G GL G ++ P +G K G L A GR G + + G+PG+ G
Sbjct: 558 GDPGRPGEPGLPGARGLTGNPGVQGPEG-KLGPLGAPGEDGRPGPPGSIGIRGQPGSMGL 616
Query: 67 RRRAGNRAWGSGRRGKSRRSRGPG----PWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVT 122
G+ G+ G++ + PG P G GP P P
Sbjct: 617 PGPKGSSG-DPGKPGEAGNAGVPGQRGAPGKDGEVGPSGPVGPPGLAGERGEQGPPGPTG 675
Query: 123 WVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSS--ERVE 180
+ G+ G GEG G G G GA G ER + ER E
Sbjct: 676 FQGLPGPPGP--------------PGEGGKPGDQGVPGDPGAVGPLGPRGERGNPGERGE 721
Query: 181 -----LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQR-- 233
L + + +G + PGP+ + G G G+R G P R
Sbjct: 722 PGITGLPGEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKGDRGG 781
Query: 234 ---RCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAP 290
+ + +A A P P P A P+ + + G GS G P
Sbjct: 782 IGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVGPPGSRGNPGSRGENGP 841
Query: 291 GEGSAGSGTERVELGPHVR 309
+G + + P V+
Sbjct: 842 TGAVGFAGPQGPDGQPGVK 860
Score = 38.5 bits (88), Expect = 0.022
Identities = 88/350 (25%), Positives = 116/350 (33%), Gaps = 50/350 (14%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAG 71
G PGL G+ G G + + E GSK G +GA + +G G G R R G
Sbjct: 291 GAPGLPGLKGHRGHKGLEGPKGEVGAPGSK-GEAGPTGPMGA-MGPLGPRGMPGERGRLG 348
Query: 72 NRAWGSGRRGKSRRSRGPGPW-PAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWV----GV 126
+ G+RG PGP P G G S G P + A T G
Sbjct: 349 PQG-APGQRGAHGMPGKPGPMGPLGIPG-------SSGFPGNPGMKGEAGPTGARGPEGP 400
Query: 127 SDWRG--------SFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSER 178
RG L + T G +G G+ G G G+AG S + S
Sbjct: 401 QGQRGETGPPGPVGSPGLPGAIGTDGTPGAKG-PTGSPGTSGPPGSAGPPGSPGPQGSTG 459
Query: 179 VE-LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSS 237
+ ++ D G + GP P G G + P G+ GK+ P
Sbjct: 460 PQGIRGQPGDPG---VPGFKGEAGPKGEPGPHGIQGPIGPPGE---EGKRGPRGDPGTVG 513
Query: 238 PSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHG-ARAPGE---- 292
P + P S P +Q R P G + GS G PGE
Sbjct: 514 PPGPVGERGAPGNRGFPGSDGLPGPKGAQGERGP----VGSSGPKGSQGDPGRPGEPGLP 569
Query: 293 ------GSAGSGTERVELGPHVRPFF----LPPTSSSFFGGPPRLHVPLP 332
G+ G +LGP P PP S G P + +P P
Sbjct: 570 GARGLTGNPGVQGPEGKLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGP 619
Score = 37.0 bits (84), Expect = 0.065
Identities = 83/327 (25%), Positives = 102/327 (31%), Gaps = 67/327 (20%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVV-GRPGNSGGRRRA 70
G PG G G + +S RP G L GLG++V ++ G G G R
Sbjct: 171 GAPGPPGHPSHPGPDGLS-RPFSAQMAG-----LDEKSGLGSQVGLMPGSVGPVGPRGPQ 224
Query: 71 G--NRAWGSGRRGKSRRSRGPGPW-PAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVS 127
G + G+G G PGP P GS GP P R V + G
Sbjct: 225 GLQGQQGGAGPTGPPGEPGDPGPMGPIGSRGPEGPPGKPGEDGEPGRNGNPGEVGFAG-- 282
Query: 128 DWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDD 187
S RG G+ G G G +G G +
Sbjct: 283 -----------SPGARGFPGAPGLP-GLKGHRGHKGLEGPKGEVG--------------- 315
Query: 188 SDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARA-SAT 246
A G++ GPT P G G L PRG RG+ P +P A
Sbjct: 316 -----APGSKGEAGPTG---PMGAMGPLGPRGMPGERGRLGPQ-----GAPGQRGAHGMP 362
Query: 247 SAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAP----GE----GSAGSG 298
P P P + S P G A G+ G P GE G GS
Sbjct: 363 GKPGPMGPLGIPGSSGFPGN------PGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSP 416
Query: 299 TERVELGPHVRPFFLPPTSSSFFGGPP 325
+G P PT S GPP
Sbjct: 417 GLPGAIGTDGTPGAKGPTGSPGTSGPP 443
Score = 35.4 bits (80), Expect = 0.19
Identities = 32/101 (31%), Positives = 38/101 (37%), Gaps = 6/101 (5%)
Query: 622 EGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVV-PHSLAT 680
E + G +G GG G G + A LPGP A TG G P L
Sbjct: 766 ERGIAGTPGPKGDRGGIGEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGLVG 825
Query: 681 APSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
P S PG+ G A G AGP G DG ++G
Sbjct: 826 PPGSRG---NPGSRGENGPTGAVGF--AGPQGPDGQPGVKG 861
Score = 33.5 bits (75), Expect = 0.71
Identities = 30/102 (29%), Positives = 32/102 (31%), Gaps = 12/102 (11%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G G +G G G D PG P A GP G LA +P
Sbjct: 834 GSRGENGPTGAVGFAGPQGPDGQPGVKGEPGEPGQKGDAGSPGPQG-----LAGSPGPHG 888
Query: 687 MGEGPGAAGGRFTQAARGMQ-------RAGPGGRDGGQSLRG 721
PG GGR TQ G R GP G G G
Sbjct: 889 PNGVPGLKGGRGTQGPPGATGFPGSAGRVGPPGPAGAPGPAG 930
Score = 33.1 bits (74), Expect = 0.93
Identities = 29/103 (28%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 192 VAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRP 251
V G R RPGP G G PRG+R +G+ P P +P
Sbjct: 123 VVTGIRGRPGPA------GPPGSQGPRGERGPKGRPGPRG------PQGIDGEPGVPGQP 170
Query: 252 TAPSSVAQPSSARSQRRRAPCPHRAGGAD---GVGSHGARAPG 291
AP PS P + G D G+GS PG
Sbjct: 171 GAPGPPGHPSHPGPDGLSRPFSAQMAGLDEKSGLGSQVGLMPG 213
Score = 31.2 bits (69), Expect = 3.5
Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 6/100 (6%)
Query: 626 LGQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGV--VPHSLAT--A 681
+G L G SG G + GE A GP GP G +P ++ T
Sbjct: 368 MGPLGIPGSSGFPGNPGMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDGT 427
Query: 682 PSSSSMGEGPGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
P + PG +G + G GP G G Q +RG
Sbjct: 428 PGAKGPTGSPGTSGPPGSAGPPG--SPGPQGSTGPQGIRG 465
Score = 30.4 bits (67), Expect = 6.0
Identities = 32/101 (31%), Positives = 34/101 (33%), Gaps = 17/101 (16%)
Query: 633 GCSGGAGGHVVAGEDAHAAAGELPG---PPALSNTAVQTGPAGVVPHSLATAPSSSSMGE 689
G G AGGH G PG PP L + G AG P G
Sbjct: 729 GEKGMAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAG------TPGPKGDRGGI 782
Query: 690 G-PGAAGGRFTQAARGMQ-------RAGPGGRDGGQSLRGL 722
G GA G ARG+ AGP G G RGL
Sbjct: 783 GEKGAEGTAGNDGARGLPGPLGPPGPAGPTGEKGEPGPRGL 823
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 50.1 bits (118), Expect = 7e-06
Identities = 67/247 (27%), Positives = 92/247 (37%), Gaps = 32/247 (12%)
Query: 60 RPG-NSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAH 118
RPG +S R A + + +S R GPG G+GG R PS +
Sbjct: 131 RPGMHSPPPRPAPSPGTWESQPARSVRLGGPGGGAGGAGGGRVLECPSIRITSISPTPEP 190
Query: 119 AAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVG--VGAGGEGGGE--GAAGAASSLSER 174
A W S R EG G AGG+GGG + +SSLS
Sbjct: 191 PAALEDNPDAW--------GDGSPRDYPPPEGFGGYREAGGQGGGAFFSPSPGSSSLSSW 242
Query: 175 S-----SERVELQSDTDDSDTRVAEGA------RPRPGPTSSRRPWGRAGGLRPRGKRPA 223
S S+ L + D+ ++ + E A P P P +S RPW G P
Sbjct: 243 SFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPSPRASPRPWTPEDPWSLYGPSPG 302
Query: 224 RGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVG 283
G+ S S+P AS PRP +P + SS+ + +P R G +G
Sbjct: 303 -GRGPEDSWLLLSAPGPTPAS----PRPASPCGKRRYSSSGTPSSASPALSRRG---SLG 354
Query: 284 SHGARAP 290
G+ P
Sbjct: 355 EEGSEPP 361
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 50.1 bits (118), Expect = 7e-06
Identities = 67/247 (27%), Positives = 92/247 (37%), Gaps = 32/247 (12%)
Query: 60 RPG-NSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAH 118
RPG +S R A + + +S R GPG G+GG R PS +
Sbjct: 68 RPGMHSPPPRPAPSPGTWESQPARSVRLGGPGGGAGGAGGGRVLECPSIRITSISPTPEP 127
Query: 119 AAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVG--VGAGGEGGGE--GAAGAASSLSER 174
A W S R EG G AGG+GGG + +SSLS
Sbjct: 128 PAALEDNPDAW--------GDGSPRDYPPPEGFGGYREAGGQGGGAFFSPSPGSSSLSSW 179
Query: 175 S-----SERVELQSDTDDSDTRVAEGA------RPRPGPTSSRRPWGRAGGLRPRGKRPA 223
S S+ L + D+ ++ + E A P P P +S RPW G P
Sbjct: 180 SFFSDASDEAALYAACDEVESELNEAASRFGLGSPLPSPRASPRPWTPEDPWSLYGPSPG 239
Query: 224 RGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVG 283
G+ S S+P AS PRP +P + SS+ + +P R G +G
Sbjct: 240 -GRGPEDSWLLLSAPGPTPAS----PRPASPCGKRRYSSSGTPSSASPALSRRG---SLG 291
Query: 284 SHGARAP 290
G+ P
Sbjct: 292 EEGSEPP 298
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 49.7 bits (117), Expect = 1e-05
Identities = 52/191 (27%), Positives = 80/191 (41%), Gaps = 7/191 (3%)
Query: 82 KSRRSR-GPGPWPAGSGGPRC--PSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSS 138
+ RRSR GP + S G P+ PS RC A G + R + +S
Sbjct: 729 RPRRSRHGPASSSSSSEGEDSAGPARPSQKRPRCSATAQRVAAWTPGPASNREAATASTS 788
Query: 139 SRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARP 198
+ + + G G G G G + A + + E L D + D + RP
Sbjct: 789 RAAYQAAIRGVGSAQSRLGPGPPRGHSKALAPQAALIPEEECLAGDWLELDMPLTRSRRP 848
Query: 199 RPGPT-SSRRPWGRAGGLRPRGKRPARGKK-RPSSQRRCSSPSAARASATSAPRPTAPSS 256
RP T +RRP +G + AR K+ R + + CS+P A S+ ++ P +PS+
Sbjct: 849 RPRGTGDNRRPSSTSGSDSEESRPRARAKQVRLTCMQSCSAPVNAGPSSLASEPPGSPST 908
Query: 257 --VAQPSSARS 265
V++PS S
Sbjct: 909 PRVSEPSGDSS 919
Score = 38.1 bits (87), Expect = 0.029
Identities = 41/164 (25%), Positives = 59/164 (35%), Gaps = 18/164 (10%)
Query: 167 AASSLSERSSERVELQSDT-DDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARG 225
AAS SS+ S D +T P P S+R P +R + A
Sbjct: 667 AASGQDPHSSQAFHTPSSLLFDPETSPPLSPCPEPPSNSTRLPEASQAHVRVSPGQAAPA 726
Query: 226 KKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSH 285
RP R + S++ + + P PS SA +QR A P A + +
Sbjct: 727 MARPRRSRHGPASSSSSSEGEDSAGPARPSQKRPRCSATAQRVAAWTPGPASNREAATAS 786
Query: 286 GARAPGEGS-AGSGTERVELGPHVRPFFLPPTSSSFFGGPPRLH 328
+RA + + G G+ + LGP GPPR H
Sbjct: 787 TSRAAYQAAIRGVGSAQSRLGP----------------GPPRGH 814
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 48.5 bits (114), Expect = 2e-05
Identities = 38/125 (30%), Positives = 61/125 (48%), Gaps = 4/125 (3%)
Query: 155 AGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVA-EGARPR-PGPTSSRRPWGRA 212
+ ++ ++SS S SS SD++ S V E A R P PT + + R
Sbjct: 2533 SSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVRE 2592
Query: 213 GGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPC 272
G RP PA+ K+R SS SS S++ +S++S+ ++ SS + SS+ S +P
Sbjct: 2593 G--RPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Query: 273 PHRAG 277
P + G
Sbjct: 2651 PAKPG 2655
Score = 35.4 bits (80), Expect = 0.19
Identities = 36/148 (24%), Positives = 57/148 (38%), Gaps = 16/148 (10%)
Query: 160 GGEGAAGAASSLSERSSERVELQSDTDDSD-----TRVAEGARPRPGPTSSRRPWGRAGG 214
G +G++ L + S + +S++D S TR R R G + R
Sbjct: 1534 GQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSP 1593
Query: 215 LRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSAR---SQRRRAP 271
R R K +P + R A++ + S+P P AP+ A P +R S + R P
Sbjct: 1594 RRSRSGSSPEVKDKPRAAPR------AQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGP 1647
Query: 272 CPHRAGGADGVGSH--GARAPGEGSAGS 297
P + + H +R GS S
Sbjct: 1648 SPEGSSSTESSPEHPPKSRTARRGSRSS 1675
Score = 35.0 bits (79), Expect = 0.25
Identities = 59/219 (26%), Positives = 76/219 (34%), Gaps = 25/219 (11%)
Query: 58 VGRPGNSGGRRRAGNRAWGSGRRGK--SRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRL 115
V P + R + R S R K SRR R P P P G R S R R
Sbjct: 1730 VSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSR-----REKTRT 1784
Query: 116 TAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERS 175
T + S R S SR TR G G + A S S
Sbjct: 1785 TRRRDRSGSSQSTSRRRQRSRSRSRVTRR----------RRGGSGYHSRSPARQESSRTS 1834
Query: 176 SERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGL---RPRGKRPARGKKRPSSQ 232
S R +S T + + +R R P +R RA R R + P ++R S+
Sbjct: 1835 SRRRRGRSRTPPTSRK---RSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRR--SR 1889
Query: 233 RRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAP 271
R S S R+ + ++ S A P S R R R P
Sbjct: 1890 SRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTP 1928
Score = 34.7 bits (78), Expect = 0.32
Identities = 46/198 (23%), Positives = 69/198 (34%), Gaps = 37/198 (18%)
Query: 143 RGLVLGEGVGVGAGGEGGGEGAAGAAS----SLSERSSERVELQSDTDDS---------D 189
R ++L + V G E G+ A + L+E+ +ER+ DS
Sbjct: 95 RLMLLEKDVNPGGKEETPGQRPAVTETHQLAELNEKKNERLRAAFGISDSYVDGSSFDPQ 154
Query: 190 TRVAEGARPRPGP----------TSSRRPWGRAG--------GLRPRGKRPARGKKRPSS 231
R E +P P P +SSR P + G R P R +K+ S
Sbjct: 155 RRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSK 214
Query: 232 QRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCP-----HRAGGADGVGSHG 286
+++ S S ++ +P P + RS R P P HR+ AD S
Sbjct: 215 KKKHRSESESKKRKHRSPTPKSKRKSKDKKRKRS-RSTTPAPKSRRAHRSTSADSASSSD 273
Query: 287 ARAPGEGSAGSGTERVEL 304
SA + T L
Sbjct: 274 TSRSRSRSAAAKTHTTAL 291
Score = 34.3 bits (77), Expect = 0.42
Identities = 64/265 (24%), Positives = 91/265 (34%), Gaps = 17/265 (6%)
Query: 38 QGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSG 97
+G R R A RG R S R +R+ RRG+S RSR P + +
Sbjct: 570 RGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRS-RSRTPARRRSRTR 628
Query: 98 GP-RCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSR--STRGLVLGEGVGVG 154
P R S RR R + RG + +R +R G
Sbjct: 629 SPVRRRSRSRSPARRSGRSRSRTPAR-------RGRSRSRTPARRGRSRSRTPARRSGRS 681
Query: 155 AGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGG 214
G + + + RS R ++ S T G R G +S R+ R
Sbjct: 682 RSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRG---RSGSSSERKNKSRTSQ 738
Query: 215 LRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPH 274
R R KK S RR S S+ R+ A S R + S++ S Q+ + P P
Sbjct: 739 RRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKS--RLSLRRSLSGSSPCPKQKSQTP-PR 795
Query: 275 RAGGADGVGSHGARAPGEGSAGSGT 299
R+ +R P S S +
Sbjct: 796 RSRSGSSQPKAKSRTPPRRSRSSSS 820
Score = 34.3 bits (77), Expect = 0.42
Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 9/115 (7%)
Query: 155 AGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGG 214
+ ++ ++SS S SS S + S + G + P P S ++P
Sbjct: 2615 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKP------ 2668
Query: 215 LRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRP-TAPSSVAQPSSARSQRR 268
P G+R +R ++P R S + P P +P SS R RR
Sbjct: 2669 --PPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRR 2721
Score = 33.9 bits (76), Expect = 0.55
Identities = 35/119 (29%), Positives = 46/119 (38%), Gaps = 15/119 (12%)
Query: 155 AGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGP-TSSRRPWGRAG 213
+G G G + SS +E S E G+R P P T SR P R
Sbjct: 1638 SGSSSKGRGPSPEGSSSTESSPEH-------PPKSRTARRGSRSSPEPKTKSRTPPRR-- 1688
Query: 214 GLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSA---RSQRRR 269
R P +K S+R S+ S+ + + PR SV+ P A RS RRR
Sbjct: 1689 --RSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRR 1745
Score = 32.3 bits (72), Expect = 1.6
Identities = 70/323 (21%), Positives = 112/323 (34%), Gaps = 34/323 (10%)
Query: 31 RPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAG-NRAWGSGRRGKSR----- 84
R + + +G R R A R + V R + RR+G +R+ RRG+SR
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPA 664
Query: 85 -RSRGPGPWPAGSGG---PRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSR 140
R R PA G R P+ R PR + + V RG + R
Sbjct: 665 RRGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVR----RGRSHSRTPQR 720
Query: 141 STRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRP 200
R G+ E + S S S E + + + S + + ++ +
Sbjct: 721 RGRS---------GSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKS 771
Query: 201 GPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRP-----TAPS 255
+ R G + + + + P R + SSQ + S + R S +S+ P PS
Sbjct: 772 RLSLRRSLSGSSPCPKQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPS 831
Query: 256 SVAQPSSARSQRRRAPCPHRAGG-ADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLP 314
+ SS+ + ++ P R G + + P S + EL P
Sbjct: 832 RQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRT-----P 886
Query: 315 PTSSSFFGGPPRLHVPLPPLLLP 337
S PPR+ PP P
Sbjct: 887 SRHSCSGSSPPRVKSSTPPRQSP 909
Score = 32.3 bits (72), Expect = 1.6
Identities = 51/213 (23%), Positives = 73/213 (34%), Gaps = 26/213 (12%)
Query: 67 RRRAGNRAWGSGRRGK-SRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVG 125
RRR+ + R+ + SRRSR + S P S RR P +++
Sbjct: 1687 RRRSSRSSPELTRKARLSRRSR------SASSSPETRSRTPPRHRRSPSVSSPEPAE--- 1737
Query: 126 VSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDT 185
K SSR R G G S S E+
Sbjct: 1738 ---------KSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRR 1788
Query: 186 DDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQR------RCSSPS 239
D S + + R + + SR R GG + PAR + +S R R S
Sbjct: 1789 DRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTS 1848
Query: 240 AARASATSAPRPTAPS-SVAQPSSARSQRRRAP 271
R+ + ++P P S S A P++ R R R P
Sbjct: 1849 RKRSRSRTSPAPWKRSRSRASPATHRRSRSRTP 1881
Score = 32.0 bits (71), Expect = 2.1
Identities = 52/225 (23%), Positives = 73/225 (32%), Gaps = 48/225 (21%)
Query: 82 KSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRS 141
K +RSR P P R SA S SD S + +++++
Sbjct: 244 KRKRSRSTTPAPKSRRAHRSTSADS-----------------ASSSDTSRSRSRSAAAKT 286
Query: 142 TRGLVLGEGVGVGAGGEGGGEGA---AGAASSLSERSSERVELQ--SDTDDSDTRVAEGA 196
+ G +G G G+ G S+ S E Q S +D D E +
Sbjct: 287 HTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKS 346
Query: 197 RPRPGPTSSRRPWG------------RAGG------LRPRGKRPARGKKRPSSQRRCSSP 238
RP P+ R G R GG P + P S R S P
Sbjct: 347 ATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPP 406
Query: 239 --------SAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHR 275
S++ S+ +P+PT S A S + AP HR
Sbjct: 407 KSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHR 451
Score = 31.2 bits (69), Expect = 3.5
Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 29/169 (17%)
Query: 167 AASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRP------RGK 220
+ S+ S SS+ +S + + T A P P S RR G A P R
Sbjct: 263 STSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPS 322
Query: 221 RPARGKKRPSS----------QRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRA 270
P K+PSS ++ + PS + +++ P P AP+ + S + A
Sbjct: 323 SPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLA 382
Query: 271 PCPHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLPPTSSS 319
P + P E S + P P LP +SSS
Sbjct: 383 TTP--------LSQEPVNPPSEASPTR-----DRSPPKSPEKLPQSSSS 418
Score = 31.2 bits (69), Expect = 3.5
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
Query: 196 ARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRR--------CSSPSAARASATS 247
+R R T + R R+G + +R R + R RR SP+ +S TS
Sbjct: 1775 SRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTS 1834
Query: 248 APRPTAPSSVAQPSSARSQRRRAPCP 273
+ R S S RS+ R +P P
Sbjct: 1835 SRRRRGRSRTPPTSRKRSRSRTSPAP 1860
Score = 30.8 bits (68), Expect = 4.6
Identities = 31/122 (25%), Positives = 47/122 (38%), Gaps = 11/122 (9%)
Query: 200 PGPTSSRRPWGRAGGLRPRGKRPAR---GKKRPSSQRRCSSPSAARASATSAPRPTA--- 253
P S R G + GLR P+R P + +PS R+ S+P P A
Sbjct: 1432 PRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIPRTPSRGRSECDSSPEPKALPQ 1491
Query: 254 ---PSSVAQPSSARSQRRRAPCPHRAGGADGVGSHG-ARAP-GEGSAGSGTERVELGPHV 308
P S + S + + P R+G V AR P G+ S ++ +++ P
Sbjct: 1492 TPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDVKPSA 1551
Query: 309 RP 310
P
Sbjct: 1552 SP 1553
Score = 30.8 bits (68), Expect = 4.6
Identities = 31/135 (22%), Positives = 48/135 (35%), Gaps = 14/135 (10%)
Query: 155 AGGEGGGEGAAGAASSLSERSSERVE-------LQSDTDDSDTRVAEGARPRPGP----- 202
+ ++G++SS SE SS V+ + S T V EG P P P
Sbjct: 2546 SSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKR 2605
Query: 203 --TSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQP 260
+SS + + SS SS S++ + + + P P A A P
Sbjct: 2606 RSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASP 2665
Query: 261 SSARSQRRRAPCPHR 275
RR+ P +
Sbjct: 2666 KKPPPGERRSRSPRK 2680
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 47.8 bits (112), Expect = 4e-05
Identities = 94/376 (25%), Positives = 125/376 (33%), Gaps = 56/376 (14%)
Query: 53 AKVRVVGRPGNSGGRRRAGNRAWGSG---------RRGKSRR----SRGPGPWPAGSG-G 98
A +RV+G G + GR+ RA G G R G +R SR P P SG G
Sbjct: 42 AALRVLGAAG-AVGRKPLAERAGGIGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRG 100
Query: 99 PRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGE 158
R P A + + T G +G L++S+ + E A
Sbjct: 101 ERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKG--LRISAEETVARGKATEAPKRSALSA 158
Query: 159 GGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRP------------------ 200
G +G + R + T+ R A ARPRP
Sbjct: 159 GARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTT 218
Query: 201 --GPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVA 258
P + RRP GGL+ RPA + SS SSP+ + SA PR A S
Sbjct: 219 EPSPAARRRP-SAGGGLQ----RPA-SRSLSSSATPLSSPARSGPSARGTPRAPAHPSQP 272
Query: 259 QPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLPPTSS 318
+P ++ R P R A +G + S + + P P P SS
Sbjct: 273 KPKGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQ--SQAPPTLP--ATPHSS 328
Query: 319 SFFGGPPRLHVPLPPLLLPLLLPPQSTGLEQAAALEVALALADPGLLLAQLAHEQVQLPF 378
S +L PLP PP L A + A G Q H + P
Sbjct: 329 SL---TCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSP- 384
Query: 379 HDVHLTFCQLLLPPPQ 394
L PPPQ
Sbjct: 385 -----PLSPLATPPPQ 395
Score = 35.4 bits (80), Expect = 0.19
Identities = 37/122 (30%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 89 PGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLG 148
PGP P SGG A + R P+ A + + + + S ++ SR T L
Sbjct: 724 PGPSPGTSGGKAAAGAGAGASSRSPK---QARLGELPLGALQASVVQHLLSR-TLLLAAA 779
Query: 149 EGVGVGA-GGEGGGEG---AAGAASSLSERSSER-VELQSDTDDSDTRVAEGARPRPGPT 203
EG G+ GG GG EG GA ++LS+ R EL S D+S + P
Sbjct: 780 EGAAGGSGGGPGGAEGGGVTGGARAALSDAELGRWAELLSPLDESRASITSVTSFSPDDV 839
Query: 204 SS 205
+S
Sbjct: 840 AS 841
Score = 30.4 bits (67), Expect = 6.0
Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 13/90 (14%)
Query: 627 GQLEARGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSS 686
G L+ G +GG AG A A+ P L + A VV H L+ +
Sbjct: 720 GALDPGPSPGTSGGKAAAGAGA-GASSRSPKQARLGELPLGALQASVVQHLLSR---TLL 775
Query: 687 MGEGPGAAGGRFTQAARGMQRAGPGGRDGG 716
+ GAAGG GPGG +GG
Sbjct: 776 LAAAEGAAGG---------SGGGPGGAEGG 796
>gi|4758410 fragile X mental retardation syndrome related protein 2
[Homo sapiens]
Length = 673
Score = 47.8 bits (112), Expect = 4e-05
Identities = 50/157 (31%), Positives = 60/157 (38%), Gaps = 21/157 (13%)
Query: 125 GVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSD 184
G SD G SSS S G GG G G G A S S E +S+
Sbjct: 402 GGSDKAGYSTDESSSSSLHAT---RTYGGSYGGRGRGRRTGGPAYGPSSDVSTASETESE 458
Query: 185 TDDSDTRVAEGARPRP--GPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSAAR 242
+ R G R P G S RRP G G RG PA RP+S+ SS S+
Sbjct: 459 KREEPNRAGPGDRDPPTRGEESRRRPTGGRG----RGPPPA---PRPTSRYNSSSISSVL 511
Query: 243 ASA---------TSAPRPTAPSSVAQPSSARSQRRRA 270
TS P P S +P A ++RRR+
Sbjct: 512 KDPDSNPYSLLDTSEPEPPVDSEPGEPPPASARRRRS 548
>gi|239754342 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 47.4 bits (111), Expect = 5e-05
Identities = 50/176 (28%), Positives = 71/176 (40%), Gaps = 14/176 (7%)
Query: 169 SSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRP-ARGKK 227
S L+ + R E + D+ + +RV AR P +R R G RPRG P AR +
Sbjct: 4 SCLNAQRGGRRERERDSK-ALSRVCAPARSARSPLGARAGGARVPGARPRGGLPRARVRA 62
Query: 228 RPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGA 287
RP + +A R +A ++ SSA R R C G+ GVG G
Sbjct: 63 RPGCRAPFLCTAAVRPAARQRLGSRGAAAATSWSSACRGRGRV-CEREGEGSRGVGEEGV 121
Query: 288 RAPGEGSA--GSGTERVELGPH-------VRPFFLPPTSSSFFGGPPRLHVPLPPL 334
A G G G+ ++ GP ++P +P + F LH PPL
Sbjct: 122 PAGGRGRGWREGGSTELQPGPRFACTSRLLKPKHVP--KAVFSASGRFLHPQFPPL 175
>gi|239750574 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 47.4 bits (111), Expect = 5e-05
Identities = 81/288 (28%), Positives = 108/288 (37%), Gaps = 52/288 (18%)
Query: 48 GRGLGAKVRVVGRPGNSGGRRRAGNRAWGSGRRGKSR----RSRGPGPWPAGSGG----- 98
GRG GA R GG + G G G R +G GP S
Sbjct: 697 GRGRGAGRAEAARAAREGGPHQGVFIQRGRGGLGHRPLPGWRGQGVGPLAQPSVQVLGRV 756
Query: 99 PRCPSAPSDGVRRCP-------RLTAHAAVTWVG-VSDWRGSFLKLSSSRSTRG-----L 145
PR P+ + V + P LTA AAV+ G + D G +++ + L
Sbjct: 757 PRDPAVGAATVAQGPVHGHVPVELTAAAAVSGRGRLRDGLGRVASVAAEGAQVAWAGAVL 816
Query: 146 VLGEGVGVGAGGEGGGEGAAGA-ASSLSERSSERVELQSDTDDSDTRVAEGAR---PRPG 201
V G GV G GGG A G A ++ +R +R RV G R R
Sbjct: 817 VQGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQR------------RVRAGRRRVGARAV 864
Query: 202 PTSSRRPWGRAGGLRP----RGKRPARGKKRPSSQRRCSSPSAARASATS-------APR 250
+ R+ G GG R G A ++ P Q+R +P+AA A+A A R
Sbjct: 865 AAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHR 924
Query: 251 PTA---PSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSA 295
P A PS +P + + RR AGGA + R G G A
Sbjct: 925 PGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQA 972
Score = 30.0 bits (66), Expect = 7.9
Identities = 73/302 (24%), Positives = 101/302 (33%), Gaps = 56/302 (18%)
Query: 23 LGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAGNRAWGSGRRGK 82
+G + +S+ P + + R R+ L + R R G R S + G
Sbjct: 5 VGPQKISLPPTRKTSHSTPR-RMFLASSLREENRAARRKTKQGASARLSASGSRSPKSGS 63
Query: 83 SRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRST 142
S P PR PS P D + LT H G L++
Sbjct: 64 SETQEAPS-------APR-PSFPPDAKAK-GLLTFHD-----------GGLLQVVGQEVN 103
Query: 143 RGLVLGEGVGVGAGGEGGGEGAAGA-----------------ASSLSERSSERVEL---- 181
G+ +G G G G GAA A S L +R R+ L
Sbjct: 104 AGVGVGRGQGTGTRPPAPAAGAADAHSADETPEASGPAPGALVSRLRKRRRRRLRLGWQP 163
Query: 182 ----QSDTDDSDTRVAEG-ARPRPGPTSSRRPWGRAGGLRPRGKRPA----RGKKRPSS- 231
D D +T + G G +++ R +A GL RG RPA RG++ S
Sbjct: 164 GLLPHVDGDVVETILEAGRGLSAHGRSTAPRTTDQAPGL-TRGPRPALRCQRGRRLQLSW 222
Query: 232 -QRRCSSPSAARASATSAPRPTAPSSVAQPSSARS--QRRRAPCPHRAGGADGVGSHGAR 288
R +PS A A A P A R R GG +G+G+ A
Sbjct: 223 GGGRLVAPSRADTHAALAAFPERDIFHGGRVVALGVVGEGRGHGGDRRGGGEGLGTVAAA 282
Query: 289 AP 290
AP
Sbjct: 283 AP 284
Score = 30.0 bits (66), Expect = 7.9
Identities = 53/195 (27%), Positives = 69/195 (35%), Gaps = 39/195 (20%)
Query: 28 VSVRPKETSFQGSKRGRLAAGRG--LGAKVRVVGRPGNSGGRRRAGNRA-WGSGRRGKSR 84
V V+ E G RG AA G GA V+ + + GRRR G RA +GR+G
Sbjct: 815 VLVQGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQG--- 871
Query: 85 RSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRG 144
AG+GG G RR H A + L+ + R R
Sbjct: 872 ---------AGAGG---------GGRRVRHGHGHGA-----------AVLQRAPCRQQRH 902
Query: 145 LVLGEGVGVGAGGEGGGEGAA---GAASSLSERSSERVELQSDTDDSDTRVAEGARPRPG 201
L A G +G A GA + S R + + +A GA P
Sbjct: 903 LA-PAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARA 961
Query: 202 PTSSRRPWGRAGGLR 216
RR G+A G R
Sbjct: 962 ALGRRRGGGQAVGAR 976
>gi|169205732 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1297
Score = 47.4 bits (111), Expect = 5e-05
Identities = 81/288 (28%), Positives = 108/288 (37%), Gaps = 52/288 (18%)
Query: 48 GRGLGAKVRVVGRPGNSGGRRRAGNRAWGSGRRGKSR----RSRGPGPWPAGSGG----- 98
GRG GA R GG + G G G R +G GP S
Sbjct: 697 GRGRGAGRAEAARAAREGGPHQGVFIQRGRGGLGHRPLPGWRGQGVGPLAQPSVQVLGRV 756
Query: 99 PRCPSAPSDGVRRCP-------RLTAHAAVTWVG-VSDWRGSFLKLSSSRSTRG-----L 145
PR P+ + V + P LTA AAV+ G + D G +++ + L
Sbjct: 757 PRDPAVGAATVAQGPVHGHVPVELTAAAAVSGRGRLRDGLGRVASVAAEGAQVAWAGAVL 816
Query: 146 VLGEGVGVGAGGEGGGEGAAGA-ASSLSERSSERVELQSDTDDSDTRVAEGAR---PRPG 201
V G GV G GGG A G A ++ +R +R RV G R R
Sbjct: 817 VQGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQR------------RVRAGRRRVGARAV 864
Query: 202 PTSSRRPWGRAGGLRP----RGKRPARGKKRPSSQRRCSSPSAARASATS-------APR 250
+ R+ G GG R G A ++ P Q+R +P+AA A+A A R
Sbjct: 865 AAAGRQGAGAGGGGRRVRHGHGHGAAVLQRAPCRQQRHLAPAAAAAAAQGVRAAQGRAHR 924
Query: 251 PTA---PSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSA 295
P A PS +P + + RR AGGA + R G G A
Sbjct: 925 PGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARAALGRRRGGGQA 972
Score = 30.0 bits (66), Expect = 7.9
Identities = 73/302 (24%), Positives = 101/302 (33%), Gaps = 56/302 (18%)
Query: 23 LGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAGNRAWGSGRRGK 82
+G + +S+ P + + R R+ L + R R G R S + G
Sbjct: 5 VGPQKISLPPTRKTSHSTPR-RMFLASSLKEENRAARRKTKQGASARLSASGSRSPKSGS 63
Query: 83 SRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRST 142
S P PR PS P D + LT H G L++
Sbjct: 64 SETQEAPS-------APR-PSFPPDAKAK-GLLTFHD-----------GGLLQVVGQEVN 103
Query: 143 RGLVLGEGVGVGAGGEGGGEGAAGA-----------------ASSLSERSSERVEL---- 181
G+ +G G G G GAA A S L +R R+ L
Sbjct: 104 AGVGVGRGQGTGTRPPAPAAGAADAHSADETPEASGPAPGALVSRLRKRRRRRLRLGWQP 163
Query: 182 ----QSDTDDSDTRVAEG-ARPRPGPTSSRRPWGRAGGLRPRGKRPA----RGKKRPSS- 231
D D +T + G G +++ R +A GL RG RPA RG++ S
Sbjct: 164 GLLPHVDGDVVETILEAGRGLSAHGRSTAPRTTDQAPGL-TRGPRPALRCQRGRRLQLSW 222
Query: 232 -QRRCSSPSAARASATSAPRPTAPSSVAQPSSARS--QRRRAPCPHRAGGADGVGSHGAR 288
R +PS A A A P A R R GG +G+G+ A
Sbjct: 223 GGGRLVAPSRADTHAALAAFPERDIFHGGRVVALGVVGEGRGHGGDRRGGGEGLGTVAAA 282
Query: 289 AP 290
AP
Sbjct: 283 AP 284
Score = 30.0 bits (66), Expect = 7.9
Identities = 53/195 (27%), Positives = 69/195 (35%), Gaps = 39/195 (20%)
Query: 28 VSVRPKETSFQGSKRGRLAAGRG--LGAKVRVVGRPGNSGGRRRAGNRA-WGSGRRGKSR 84
V V+ E G RG AA G GA V+ + + GRRR G RA +GR+G
Sbjct: 815 VLVQGHEAGVAGGARGGGAAAGGPLAGAVVQRMRQRRVRAGRRRVGARAVAAAGRQG--- 871
Query: 85 RSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRG 144
AG+GG G RR H A + L+ + R R
Sbjct: 872 ---------AGAGG---------GGRRVRHGHGHGA-----------AVLQRAPCRQQRH 902
Query: 145 LVLGEGVGVGAGGEGGGEGAA---GAASSLSERSSERVELQSDTDDSDTRVAEGARPRPG 201
L A G +G A GA + S R + + +A GA P
Sbjct: 903 LA-PAAAAAAAQGVRAAQGRAHRPGAQGAPSHRHRPGARGRRSRRRAAVALAGGAHPARA 961
Query: 202 PTSSRRPWGRAGGLR 216
RR G+A G R
Sbjct: 962 ALGRRRGGGQAVGAR 976
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 47.0 bits (110), Expect = 6e-05
Identities = 88/356 (24%), Positives = 118/356 (33%), Gaps = 47/356 (13%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGR-LAAGRGLGAKVRVVGRPGNSGGRRRA 70
G PG G+SG G + P E G++ L G G VG PG G A
Sbjct: 1021 GDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTA 1080
Query: 71 GNRAWGSGRRGKSRRSRGPGP-WPAGSGGPRCPSAPS--DGVRRCPRLTAHAAVTWVGVS 127
G G G+ PGP G+ G + P P+ DGV+ L A
Sbjct: 1081 GP----IGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1136
Query: 128 DWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVE-LQSDTD 186
D + + ++G GE G G G GA G A E + +
Sbjct: 1137 DGDKGEIGEPGQKGSKG-DKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKG 1195
Query: 187 DSDTRVAEGA------RPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA 240
D R G + PGP + G G + P G RG + P+ P
Sbjct: 1196 DEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPG 1255
Query: 241 ARASA-----------TSAPRPTAPSSVAQPSSARSQRRRAPCPHRAG--GADG-VGSHG 286
+ S P P + V P R ++ A P AG GA G G G
Sbjct: 1256 SVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDG 1315
Query: 287 ARA-------------PGE----GSAGSGTERVELGPHVRPFFLPPTSSSFFGGPP 325
+ PGE G G G ++ E G +P P+ + GPP
Sbjct: 1316 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPP 1371
Score = 40.0 bits (92), Expect = 0.008
Identities = 78/314 (24%), Positives = 100/314 (31%), Gaps = 58/314 (18%)
Query: 12 GGPGLSGVSGLLG--GEMV--------------SVRPKETSFQGSKRGRLAAGRGLGAKV 55
G PGL G GL G G M+ ++ +E Q + A RG +
Sbjct: 487 GRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPM 546
Query: 56 RVVGRPGNSGGRRRAGNRAWGSGRRGKSRRSRGPGP-WPAGSGGPRCPSAPSDGVRRCPR 114
+ GRPG G G G G S PGP P G GP P+ G R P
Sbjct: 547 GLTGRPGPVG----------GPGSSGAKGESGDPGPQGPRGVQGPPGPTG-KPGKRGRPG 595
Query: 115 LTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSER 174
+ + F L +G GE G G G +G G + R
Sbjct: 596 ADGGRGMPGEPGAKGDRGFDGLPGLPGDKG-HRGERGPQGPPGPPGDDGMRGEDGEIGPR 654
Query: 175 SSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRR 234
++ R G R PG G G P+G +G+ P Q+
Sbjct: 655 GL--------PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQG 706
Query: 235 CSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAG--GADGVGSHGARAPGE 292
P P P P + P Q + P AG GADG H
Sbjct: 707 NPGPQ-------GLPGPQGP--IGPPGEKGPQGK----PGLAGLPGADGPPGH------P 747
Query: 293 GSAGSGTERVELGP 306
G G E+ LGP
Sbjct: 748 GKEGQSGEKGALGP 761
Score = 38.5 bits (88), Expect = 0.022
Identities = 89/389 (22%), Positives = 118/389 (30%), Gaps = 70/389 (17%)
Query: 10 TLGGPGLSGVSGLLG--GEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGR 67
T G PG G++G+ G G ++ P+ ++G +GL +G PG G +
Sbjct: 671 TPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGN-PGPQGLPGPQGPIGPPGEKGPQ 729
Query: 68 RRAG-----------NRAWGSGRRGKSRRSRGPGPW-PAGSGGPRCPSAPSDGVRRCPRL 115
+ G G+ G+ PGP P G GPR +DGVR
Sbjct: 730 GKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKG-ADGVRGLKGS 788
Query: 116 TAHAAVTWVGVSDWRGSFLKLSSSRSTRGLV--LGEGVGVGAGGEGGGEGAAGAASSLSE 173
G ++G + L R G + GE G G G G G + E
Sbjct: 789 KGEKGED--GFPGFKGD-MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGE 845
Query: 174 RSSERVE----------------LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRP 217
+ V + + A G +PGP R P G P
Sbjct: 846 KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG------P 899
Query: 218 RGKRPARGKK-RPSSQRRCSSPSAARASATSAPR-PTAPSSVAQPSSARSQRRRAPCPHR 275
RG R ARG +P + P+ P P P + P
Sbjct: 900 RGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH 959
Query: 276 AGGADGVGSHGARA-PGEGSAGSGTERVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPL 334
G G G PG G +GP P GPP
Sbjct: 960 PGQRGETGFQGKTGPPGPGGV--------VGPQGPTGETGPIGERGHPGPPG-------- 1003
Query: 335 LLPLLLPPQSTGLEQAAALEVALALADPG 363
PP GL AA E A DPG
Sbjct: 1004 ------PPGEQGLPGAAGKEG--AKGDPG 1024
Score = 37.0 bits (84), Expect = 0.065
Identities = 52/224 (23%), Positives = 72/224 (32%), Gaps = 29/224 (12%)
Query: 59 GRPGNSG--------GRRRAGNRAWGSGRRG-KSRRSRGPGPWPAGSGGPRCPSAPS--- 106
G PG SG G+R A GR+G K + P G GP P P+
Sbjct: 1357 GPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1416
Query: 107 --DGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGA 164
+G+R P + D + +G G+ GE G G
Sbjct: 1417 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKG-------DPGSKGEKGHPGL 1469
Query: 165 AGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPAR 224
G E+ + T S +G P GP P G G P+G + +
Sbjct: 1470 IGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP--GPAGPLGPPGPPGLPGPQGPKGNK 1527
Query: 225 GKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRR 268
G P+ Q+ S S P P V QP S ++
Sbjct: 1528 GSTGPAGQKGDSGLPGPPGS------PGPPGEVIQPLPILSSKK 1565
Score = 35.4 bits (80), Expect = 0.19
Identities = 36/120 (30%), Positives = 46/120 (38%), Gaps = 21/120 (17%)
Query: 622 EGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELP---------GPPALSNTAVQTGPAG 672
E L G G G G ++G+D A P G P L GP G
Sbjct: 1007 EQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPG 1066
Query: 673 VV--PHSLATAPSSSSMG-------EG-PGAAGGRFTQAARGMQRAGPGGRDGGQSLRGL 722
V P +A ++ +G +G PG AG + +G Q GP GRDG Q GL
Sbjct: 1067 PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQ--GPAGRDGVQGPVGL 1124
Score = 35.0 bits (79), Expect = 0.25
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 633 GCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGV-VPHSLATAPSSSSMGEGP 691
G G AG V G+ PGPP S A GP G P A A
Sbjct: 1333 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1392
Query: 692 GAAGGRFTQAARG-MQRAGPGGRDGGQSLRGL 722
G AG G + GP G+ G + LRG+
Sbjct: 1393 GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1424
Score = 32.7 bits (73), Expect = 1.2
Identities = 29/91 (31%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 632 RGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEGP 691
RG G AG GE GPP +TGP G P A P + P
Sbjct: 1374 RGPPGAAGAEGRQGEKGAKGEAGAEGPPG------KTGPVG--PQGPAGKPGPEGLRGIP 1425
Query: 692 GAAGGRFTQAARGMQRAGPGGRDGGQSLRGL 722
G G + A G GP G G L GL
Sbjct: 1426 GPVGEQGLPGAAGQD--GPPGPMGPPGLPGL 1454
Score = 30.0 bits (66), Expect = 7.9
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 637 GAGGHVVAGEDAHAAAG------ELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEG 690
G+ G ++ ++A A A L GPP + GP G S A S +G
Sbjct: 515 GSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQG 574
Query: 691 PGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
P G + +R PG DGG+ + G
Sbjct: 575 PRGVQGPPGPTGKPGKRGRPGA-DGGRGMPG 604
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 47.0 bits (110), Expect = 6e-05
Identities = 88/356 (24%), Positives = 118/356 (33%), Gaps = 47/356 (13%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGR-LAAGRGLGAKVRVVGRPGNSGGRRRA 70
G PG G+SG G + P E G++ L G G VG PG G A
Sbjct: 970 GDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTA 1029
Query: 71 GNRAWGSGRRGKSRRSRGPGP-WPAGSGGPRCPSAPS--DGVRRCPRLTAHAAVTWVGVS 127
G G G+ PGP G+ G + P P+ DGV+ L A
Sbjct: 1030 GP----IGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1085
Query: 128 DWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVE-LQSDTD 186
D + + ++G GE G G G GA G A E + +
Sbjct: 1086 DGDKGEIGEPGQKGSKG-DKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKG 1144
Query: 187 DSDTRVAEGA------RPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA 240
D R G + PGP + G G + P G RG + P+ P
Sbjct: 1145 DEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPG 1204
Query: 241 ARASA-----------TSAPRPTAPSSVAQPSSARSQRRRAPCPHRAG--GADG-VGSHG 286
+ S P P + V P R ++ A P AG GA G G G
Sbjct: 1205 SVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDG 1264
Query: 287 ARA-------------PGE----GSAGSGTERVELGPHVRPFFLPPTSSSFFGGPP 325
+ PGE G G G ++ E G +P P+ + GPP
Sbjct: 1265 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPP 1320
Score = 40.0 bits (92), Expect = 0.008
Identities = 78/314 (24%), Positives = 100/314 (31%), Gaps = 58/314 (18%)
Query: 12 GGPGLSGVSGLLG--GEMV--------------SVRPKETSFQGSKRGRLAAGRGLGAKV 55
G PGL G GL G G M+ ++ +E Q + A RG +
Sbjct: 436 GRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPM 495
Query: 56 RVVGRPGNSGGRRRAGNRAWGSGRRGKSRRSRGPGP-WPAGSGGPRCPSAPSDGVRRCPR 114
+ GRPG G G G G S PGP P G GP P+ G R P
Sbjct: 496 GLTGRPGPVG----------GPGSSGAKGESGDPGPQGPRGVQGPPGPTG-KPGKRGRPG 544
Query: 115 LTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSER 174
+ + F L +G GE G G G +G G + R
Sbjct: 545 ADGGRGMPGEPGAKGDRGFDGLPGLPGDKG-HRGERGPQGPPGPPGDDGMRGEDGEIGPR 603
Query: 175 SSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRR 234
++ R G R PG G G P+G +G+ P Q+
Sbjct: 604 GL--------PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQG 655
Query: 235 CSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAG--GADGVGSHGARAPGE 292
P P P P + P Q + P AG GADG H
Sbjct: 656 NPGPQ-------GLPGPQGP--IGPPGEKGPQGK----PGLAGLPGADGPPGH------P 696
Query: 293 GSAGSGTERVELGP 306
G G E+ LGP
Sbjct: 697 GKEGQSGEKGALGP 710
Score = 38.5 bits (88), Expect = 0.022
Identities = 89/389 (22%), Positives = 118/389 (30%), Gaps = 70/389 (17%)
Query: 10 TLGGPGLSGVSGLLG--GEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGR 67
T G PG G++G+ G G ++ P+ ++G +GL +G PG G +
Sbjct: 620 TPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGN-PGPQGLPGPQGPIGPPGEKGPQ 678
Query: 68 RRAG-----------NRAWGSGRRGKSRRSRGPGPW-PAGSGGPRCPSAPSDGVRRCPRL 115
+ G G+ G+ PGP P G GPR +DGVR
Sbjct: 679 GKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKG-ADGVRGLKGS 737
Query: 116 TAHAAVTWVGVSDWRGSFLKLSSSRSTRGLV--LGEGVGVGAGGEGGGEGAAGAASSLSE 173
G ++G + L R G + GE G G G G G + E
Sbjct: 738 KGEKGED--GFPGFKGD-MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGE 794
Query: 174 RSSERVE----------------LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRP 217
+ V + + A G +PGP R P G P
Sbjct: 795 KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG------P 848
Query: 218 RGKRPARGKK-RPSSQRRCSSPSAARASATSAPR-PTAPSSVAQPSSARSQRRRAPCPHR 275
RG R ARG +P + P+ P P P + P
Sbjct: 849 RGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH 908
Query: 276 AGGADGVGSHGARA-PGEGSAGSGTERVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPL 334
G G G PG G +GP P GPP
Sbjct: 909 PGQRGETGFQGKTGPPGPGGV--------VGPQGPTGETGPIGERGHPGPPG-------- 952
Query: 335 LLPLLLPPQSTGLEQAAALEVALALADPG 363
PP GL AA E A DPG
Sbjct: 953 ------PPGEQGLPGAAGKEG--AKGDPG 973
Score = 37.0 bits (84), Expect = 0.065
Identities = 52/224 (23%), Positives = 72/224 (32%), Gaps = 29/224 (12%)
Query: 59 GRPGNSG--------GRRRAGNRAWGSGRRG-KSRRSRGPGPWPAGSGGPRCPSAPS--- 106
G PG SG G+R A GR+G K + P G GP P P+
Sbjct: 1306 GPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1365
Query: 107 --DGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGA 164
+G+R P + D + +G G+ GE G G
Sbjct: 1366 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKG-------DPGSKGEKGHPGL 1418
Query: 165 AGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPAR 224
G E+ + T S +G P GP P G G P+G + +
Sbjct: 1419 IGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP--GPAGPLGPPGPPGLPGPQGPKGNK 1476
Query: 225 GKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRR 268
G P+ Q+ S S P P V QP S ++
Sbjct: 1477 GSTGPAGQKGDSGLPGPPGS------PGPPGEVIQPLPILSSKK 1514
Score = 35.4 bits (80), Expect = 0.19
Identities = 36/120 (30%), Positives = 46/120 (38%), Gaps = 21/120 (17%)
Query: 622 EGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELP---------GPPALSNTAVQTGPAG 672
E L G G G G ++G+D A P G P L GP G
Sbjct: 956 EQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPG 1015
Query: 673 VV--PHSLATAPSSSSMG-------EG-PGAAGGRFTQAARGMQRAGPGGRDGGQSLRGL 722
V P +A ++ +G +G PG AG + +G Q GP GRDG Q GL
Sbjct: 1016 PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQ--GPAGRDGVQGPVGL 1073
Score = 35.0 bits (79), Expect = 0.25
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 633 GCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGV-VPHSLATAPSSSSMGEGP 691
G G AG V G+ PGPP S A GP G P A A
Sbjct: 1282 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1341
Query: 692 GAAGGRFTQAARG-MQRAGPGGRDGGQSLRGL 722
G AG G + GP G+ G + LRG+
Sbjct: 1342 GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1373
Score = 32.7 bits (73), Expect = 1.2
Identities = 29/91 (31%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 632 RGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEGP 691
RG G AG GE GPP +TGP G P A P + P
Sbjct: 1323 RGPPGAAGAEGRQGEKGAKGEAGAEGPPG------KTGPVG--PQGPAGKPGPEGLRGIP 1374
Query: 692 GAAGGRFTQAARGMQRAGPGGRDGGQSLRGL 722
G G + A G GP G G L GL
Sbjct: 1375 GPVGEQGLPGAAGQD--GPPGPMGPPGLPGL 1403
Score = 30.0 bits (66), Expect = 7.9
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 637 GAGGHVVAGEDAHAAAG------ELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEG 690
G+ G ++ ++A A A L GPP + GP G S A S +G
Sbjct: 464 GSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQG 523
Query: 691 PGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
P G + +R PG DGG+ + G
Sbjct: 524 PRGVQGPPGPTGKPGKRGRPGA-DGGRGMPG 553
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 47.0 bits (110), Expect = 6e-05
Identities = 88/356 (24%), Positives = 118/356 (33%), Gaps = 47/356 (13%)
Query: 12 GGPGLSGVSGLLGGEMVSVRPKETSFQGSKRGR-LAAGRGLGAKVRVVGRPGNSGGRRRA 70
G PG G+SG G + P E G++ L G G VG PG G A
Sbjct: 1009 GDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTA 1068
Query: 71 GNRAWGSGRRGKSRRSRGPGP-WPAGSGGPRCPSAPS--DGVRRCPRLTAHAAVTWVGVS 127
G G G+ PGP G+ G + P P+ DGV+ L A
Sbjct: 1069 GP----IGLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPAGSPGE 1124
Query: 128 DWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVE-LQSDTD 186
D + + ++G GE G G G GA G A E + +
Sbjct: 1125 DGDKGEIGEPGQKGSKG-DKGENGPPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKG 1183
Query: 187 DSDTRVAEGA------RPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRRCSSPSA 240
D R G + PGP + G G + P G RG + P+ P
Sbjct: 1184 DEGARGFPGPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPG 1243
Query: 241 ARASA-----------TSAPRPTAPSSVAQPSSARSQRRRAPCPHRAG--GADG-VGSHG 286
+ S P P + V P R ++ A P AG GA G G G
Sbjct: 1244 SVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDG 1303
Query: 287 ARA-------------PGE----GSAGSGTERVELGPHVRPFFLPPTSSSFFGGPP 325
+ PGE G G G ++ E G +P P+ + GPP
Sbjct: 1304 PKGNPGPVGFPGDPGPPGEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPP 1359
Score = 40.0 bits (92), Expect = 0.008
Identities = 78/314 (24%), Positives = 100/314 (31%), Gaps = 58/314 (18%)
Query: 12 GGPGLSGVSGLLG--GEMV--------------SVRPKETSFQGSKRGRLAAGRGLGAKV 55
G PGL G GL G G M+ ++ +E Q + A RG +
Sbjct: 475 GRPGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPM 534
Query: 56 RVVGRPGNSGGRRRAGNRAWGSGRRGKSRRSRGPGP-WPAGSGGPRCPSAPSDGVRRCPR 114
+ GRPG G G G G S PGP P G GP P+ G R P
Sbjct: 535 GLTGRPGPVG----------GPGSSGAKGESGDPGPQGPRGVQGPPGPTG-KPGKRGRPG 583
Query: 115 LTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSER 174
+ + F L +G GE G G G +G G + R
Sbjct: 584 ADGGRGMPGEPGAKGDRGFDGLPGLPGDKG-HRGERGPQGPPGPPGDDGMRGEDGEIGPR 642
Query: 175 SSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPARGKKRPSSQRR 234
++ R G R PG G G P+G +G+ P Q+
Sbjct: 643 GL--------PGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQG 694
Query: 235 CSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAG--GADGVGSHGARAPGE 292
P P P P + P Q + P AG GADG H
Sbjct: 695 NPGPQ-------GLPGPQGP--IGPPGEKGPQGK----PGLAGLPGADGPPGH------P 735
Query: 293 GSAGSGTERVELGP 306
G G E+ LGP
Sbjct: 736 GKEGQSGEKGALGP 749
Score = 38.5 bits (88), Expect = 0.022
Identities = 89/389 (22%), Positives = 118/389 (30%), Gaps = 70/389 (17%)
Query: 10 TLGGPGLSGVSGLLG--GEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGR 67
T G PG G++G+ G G ++ P+ ++G +GL +G PG G +
Sbjct: 659 TPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGN-PGPQGLPGPQGPIGPPGEKGPQ 717
Query: 68 RRAG-----------NRAWGSGRRGKSRRSRGPGPW-PAGSGGPRCPSAPSDGVRRCPRL 115
+ G G+ G+ PGP P G GPR +DGVR
Sbjct: 718 GKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPGPQGPIGYPGPRGVKG-ADGVRGLKGS 776
Query: 116 TAHAAVTWVGVSDWRGSFLKLSSSRSTRGLV--LGEGVGVGAGGEGGGEGAAGAASSLSE 173
G ++G + L R G + GE G G G G G + E
Sbjct: 777 KGEKGED--GFPGFKGD-MGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGE 833
Query: 174 RSSERVE----------------LQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRP 217
+ V + + A G +PGP R P G P
Sbjct: 834 KGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGPRGQRGPTG------P 887
Query: 218 RGKRPARGKK-RPSSQRRCSSPSAARASATSAPR-PTAPSSVAQPSSARSQRRRAPCPHR 275
RG R ARG +P + P+ P P P + P
Sbjct: 888 RGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGH 947
Query: 276 AGGADGVGSHGARA-PGEGSAGSGTERVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPL 334
G G G PG G +GP P GPP
Sbjct: 948 PGQRGETGFQGKTGPPGPGGV--------VGPQGPTGETGPIGERGHPGPPG-------- 991
Query: 335 LLPLLLPPQSTGLEQAAALEVALALADPG 363
PP GL AA E A DPG
Sbjct: 992 ------PPGEQGLPGAAGKEG--AKGDPG 1012
Score = 37.0 bits (84), Expect = 0.065
Identities = 52/224 (23%), Positives = 72/224 (32%), Gaps = 29/224 (12%)
Query: 59 GRPGNSG--------GRRRAGNRAWGSGRRG-KSRRSRGPGPWPAGSGGPRCPSAPS--- 106
G PG SG G+R A GR+G K + P G GP P P+
Sbjct: 1345 GPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKP 1404
Query: 107 --DGVRRCPRLTAHAAVTWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGA 164
+G+R P + D + +G G+ GE G G
Sbjct: 1405 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKG-------DPGSKGEKGHPGL 1457
Query: 165 AGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRAGGLRPRGKRPAR 224
G E+ + T S +G P GP P G G P+G + +
Sbjct: 1458 IGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIP--GPAGPLGPPGPPGLPGPQGPKGNK 1515
Query: 225 GKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRR 268
G P+ Q+ S S P P V QP S ++
Sbjct: 1516 GSTGPAGQKGDSGLPGPPGS------PGPPGEVIQPLPILSSKK 1553
Score = 35.4 bits (80), Expect = 0.19
Identities = 36/120 (30%), Positives = 46/120 (38%), Gaps = 21/120 (17%)
Query: 622 EGDLLGQLEARGCSGGAGGHVVAGEDAHAAAGELP---------GPPALSNTAVQTGPAG 672
E L G G G G ++G+D A P G P L GP G
Sbjct: 995 EQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPG 1054
Query: 673 VV--PHSLATAPSSSSMG-------EG-PGAAGGRFTQAARGMQRAGPGGRDGGQSLRGL 722
V P +A ++ +G +G PG AG + +G Q GP GRDG Q GL
Sbjct: 1055 PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQ--GPAGRDGVQGPVGL 1112
Score = 35.0 bits (79), Expect = 0.25
Identities = 29/92 (31%), Positives = 34/92 (36%), Gaps = 2/92 (2%)
Query: 633 GCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGV-VPHSLATAPSSSSMGEGP 691
G G AG V G+ PGPP S A GP G P A A
Sbjct: 1321 GEPGPAGQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGRQGEKGAK 1380
Query: 692 GAAGGRFTQAARG-MQRAGPGGRDGGQSLRGL 722
G AG G + GP G+ G + LRG+
Sbjct: 1381 GEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGI 1412
Score = 32.7 bits (73), Expect = 1.2
Identities = 29/91 (31%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 632 RGCSGGAGGHVVAGEDAHAAAGELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEGP 691
RG G AG GE GPP +TGP G P A P + P
Sbjct: 1362 RGPPGAAGAEGRQGEKGAKGEAGAEGPPG------KTGPVG--PQGPAGKPGPEGLRGIP 1413
Query: 692 GAAGGRFTQAARGMQRAGPGGRDGGQSLRGL 722
G G + A G GP G G L GL
Sbjct: 1414 GPVGEQGLPGAAGQD--GPPGPMGPPGLPGL 1442
Score = 30.0 bits (66), Expect = 7.9
Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 637 GAGGHVVAGEDAHAAAG------ELPGPPALSNTAVQTGPAGVVPHSLATAPSSSSMGEG 690
G+ G ++ ++A A A L GPP + GP G S A S +G
Sbjct: 503 GSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQG 562
Query: 691 PGAAGGRFTQAARGMQRAGPGGRDGGQSLRG 721
P G + +R PG DGG+ + G
Sbjct: 563 PRGVQGPPGPTGKPGKRGRPGA-DGGRGMPG 592
>gi|239743069 PREDICTED: hypothetical protein XP_002342750 [Homo
sapiens]
Length = 231
Score = 46.6 bits (109), Expect = 8e-05
Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 153 VGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRA 212
+ GG GGG G GA + R ++R + +D A P RR R
Sbjct: 80 IAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA---PSGLRRRRLQRRR 136
Query: 213 GGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPC 272
GG RG R A ++P R + S A RP P SVA + A + P
Sbjct: 137 GG---RGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPV 193
Query: 273 PHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLP 314
P G + +P G+AG G RPF P
Sbjct: 194 PGGPAGPRESWARRTSSPPRGAAGGG----------RPFLHP 225
Score = 36.6 bits (83), Expect = 0.084
Identities = 53/175 (30%), Positives = 65/175 (37%), Gaps = 44/175 (25%)
Query: 62 GNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAV 121
G+ GG G + W +GRR ++R +G G G +APS G+RR
Sbjct: 84 GSGGGGGGCGAQHWAAGRR--AQREQGAGAAVLADFG-HVRAAPS-GLRR---------- 129
Query: 122 TWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAG-GEGGGEGAAGAASSLSERSSERVE 180
+L R RG G GAG G AGA SL + R+
Sbjct: 130 ------------RRLQRRRGGRG-------GRGAGRARKPGPDRAGAERSLPAHRAPRL- 169
Query: 181 LQSDTDDSDTRVAE-----GARPRP-GPTSSRRPWGRAGGLRPRGKRPARGKKRP 229
+ S VA GARP P GP R W R PRG A G RP
Sbjct: 170 ARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRG---AAGGGRP 221
>gi|239508715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 46.6 bits (109), Expect = 8e-05
Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 16/162 (9%)
Query: 153 VGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRVAEGARPRPGPTSSRRPWGRA 212
+ GG GGG G GA + R ++R + +D A P RR R
Sbjct: 80 IAPGGSGGGGGGCGAQHWAAGRRAQREQGAGAAVLADFGHVRAA---PSGLRRRRLQRRR 136
Query: 213 GGLRPRGKRPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAPC 272
GG RG R A ++P R + S A RP P SVA + A + P
Sbjct: 137 GG---RGGRGAGRARKPGPDRAGAERSLPAHRAPRLARPPVPPSVAHVARASAGLGARPV 193
Query: 273 PHRAGGADGVGSHGARAPGEGSAGSGTERVELGPHVRPFFLP 314
P G + +P G+AG G RPF P
Sbjct: 194 PGGPAGPRESWARRTSSPPRGAAGGG----------RPFLHP 225
Score = 36.6 bits (83), Expect = 0.084
Identities = 53/175 (30%), Positives = 65/175 (37%), Gaps = 44/175 (25%)
Query: 62 GNSGGRRRAGNRAWGSGRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAV 121
G+ GG G + W +GRR ++R +G G G +APS G+RR
Sbjct: 84 GSGGGGGGCGAQHWAAGRR--AQREQGAGAAVLADFG-HVRAAPS-GLRR---------- 129
Query: 122 TWVGVSDWRGSFLKLSSSRSTRGLVLGEGVGVGAG-GEGGGEGAAGAASSLSERSSERVE 180
+L R RG G GAG G AGA SL + R+
Sbjct: 130 ------------RRLQRRRGGRG-------GRGAGRARKPGPDRAGAERSLPAHRAPRL- 169
Query: 181 LQSDTDDSDTRVAE-----GARPRP-GPTSSRRPWGRAGGLRPRGKRPARGKKRP 229
+ S VA GARP P GP R W R PRG A G RP
Sbjct: 170 ARPPVPPSVAHVARASAGLGARPVPGGPAGPRESWARRTSSPPRG---AAGGGRP 221
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 46.6 bits (109), Expect = 8e-05
Identities = 81/295 (27%), Positives = 100/295 (33%), Gaps = 35/295 (11%)
Query: 72 NRAWGS-GRRGKSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAH----AAVTWVGV 126
N A GS G+ + + PGP A + P AP + P L+ A W
Sbjct: 1266 NAARGSEGKPSLTLPASAPGPEEALTTVTVAP-APRRAAAKSPDLSNQNSDQANEEWETA 1324
Query: 127 SDWRGSFLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAG-AASSLSERSSERVELQSDT 185
S+ + + VL VG G GGG G +A S + S +L +
Sbjct: 1325 SESSDFTSERRGDKEAPPPVLLTPKAVGTPGGGGGGAVPGISAMSRGDLSQRAKDLSKRS 1384
Query: 186 DDSDTRVAEGARPRPGPTSSRRPWGRA---GGLRPRGKR-PARGKKR--PSSQRRCSSPS 239
S E RPGP G + GG P G+ P RG KR PS + R S P
Sbjct: 1385 FSSQRPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPGRGDKRSWPSPKNR-SRPP 1443
Query: 240 AARASATSAPRPTAPSS-------VAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGE 292
R P P SS V + A Q+ A R G G H PG
Sbjct: 1444 EERPPGLPLPPPPPSSSAVFRLDQVIHSNPAGIQQALAQLSSRQGSVTAPGGHPRHKPGL 1503
Query: 293 GSAGSG----------TERVELGPHVRPFFLPP-TSSSFFGGPPRLHV---PLPP 333
A G +RV G P F P GG PR P PP
Sbjct: 1504 PQAPQGPSPRPPTRYEPQRVNSGLSSDPHFEEPGPMVRGVGGTPRDSAGVSPFPP 1558
Score = 39.7 bits (91), Expect = 0.010
Identities = 73/305 (23%), Positives = 99/305 (32%), Gaps = 34/305 (11%)
Query: 81 GKSRRSRGPGPWPAGSGGPRCPSAP--------SDGVRRCPRLTAHAAVTWVGVSDWRGS 132
G SR R GP GSG P P D ++ +L W G +
Sbjct: 278 GPSRFPRVAGP--RGSGPPMRLVEPVGRPSILKEDNLKEFDQLDQENDDGWAGAHEEVDY 335
Query: 133 FLKLSSSRSTRGLVLGEGVGVGAGGEGGGEGAAGAASSLSERSSERVELQSDTDDSDTRV 192
KL S G E GA G + A+G + S+ T
Sbjct: 336 TEKLKFSDEEDGRDSDEE---GAEGHRDSQSASGEERPPEADGKKGNSPNSEPPTPKTAW 392
Query: 193 AEGARP---RPGPTSSRRPW-----GRAGGLRPRGKRPARGKKRPSSQRRCSSPSAARAS 244
AE +RP PGP + + P G AG P G P RG C P+
Sbjct: 393 AETSRPPETEPGPPAPKPPLPPPHRGPAGNWGPPGDYPDRGGPP------CKPPAPEDED 446
Query: 245 ATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEGSAGSGTERVEL 304
R SS + R++RRR R + G+ +R++
Sbjct: 447 EAWRQRRKQSSSEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKA 506
Query: 305 GPHVRPFFLPPTSSSFFGGPPRL--HVPLPPLLLPLLLPPQSTGLEQAAALEVALALADP 362
P PP + S PP + +P PP P P T E+ A A + P
Sbjct: 507 EPAA-----PPAAPSTPAPPPAVPKELPAPPAPPPASAPTPETEPEEPAQAPPAQSTPTP 561
Query: 363 GLLLA 367
G+ A
Sbjct: 562 GVAAA 566
Score = 35.8 bits (81), Expect = 0.14
Identities = 92/353 (26%), Positives = 125/353 (35%), Gaps = 61/353 (17%)
Query: 18 GVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAGNRAWGS 77
G G GG R +E RG G G G P GR + R+ GS
Sbjct: 1037 GFRGTYGGRGRGARSREFRSYREFRGDDGRGGGTGGP----NHPPAPRGRTASETRSEGS 1092
Query: 78 GRRG--KSRRSRGPGPWPAGSGGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWR-GSFL 134
K RR RG GS APSD P+ +T V ++ G+
Sbjct: 1093 EYEEIPKRRRQRGS---ETGSETHESDLAPSDKEAPTPK---EGTLTQVPLAPPPPGAPP 1146
Query: 135 KLSSSRST-RGLVLGEGVGVGAG-GEGGGE-------GAAGAASSLSERSSERVELQSDT 185
+ +R T RG + GV + G GGG G + A SL+ + L
Sbjct: 1147 SPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQVCPGWSPPAKSLAPKKPPTGPLPPSK 1206
Query: 186 DDSDTRVAEGARPRPGPTSSRRPWGRAGGL--------RPRGKRPARGKK--RPSSQRRC 235
+ ++ PGP S G GG RPR +R R ++ +P RR
Sbjct: 1207 EPLKEKLI------PGPLSPVARGGSNGGSNVGMEDGERPRRRRHGRAQQQDKPPRFRRL 1260
Query: 236 SSP--SAARASATSAPRPTAPSSVAQPSSARSQRRRAPCPHRAGGADGVGSHGARAPGEG 293
+AAR S P T P+S P A + AP P RA A++P
Sbjct: 1261 KQERENAARGSE-GKPSLTLPASAPGPEEALTTVTVAPAPRRA---------AAKSPDLS 1310
Query: 294 SAGSGTERVELGPHVRPFFLPPTSSSFFGGPPRLHVPLPPLLLPLLLPPQSTG 346
+ S E + + SS F R PP P+LL P++ G
Sbjct: 1311 NQNSDQANEE--------WETASESSDFTSERRGDKEAPP---PVLLTPKAVG 1352
Score = 33.5 bits (75), Expect = 0.71
Identities = 66/255 (25%), Positives = 84/255 (32%), Gaps = 67/255 (26%)
Query: 97 GGPRCPSAPSDGVRRCPRLTAHAAVTWVGVSDWRGSFLK--LSSSRSTRGLVLGEGVGV- 153
GGP+ + P+ + PRL + VG + RG + R RG G G G
Sbjct: 992 GGPK-ETPPNGNLSPAPRLRRDYSYERVGPTSCRGRGRGEYFARGRGFRGTYGGRGRGAR 1050
Query: 154 -----------GAGGEGGGEGA-----AGAASSLSERSSERVELQ--------------S 183
G G GGG G A + SE SE E + S
Sbjct: 1051 SREFRSYREFRGDDGRGGGTGGPNHPPAPRGRTASETRSEGSEYEEIPKRRRQRGSETGS 1110
Query: 184 DTDDSDTRVAE---------------------GARPRPGPTSSRRPWGRAGGLRPRG--K 220
+T +SD ++ GA P P P GR PRG
Sbjct: 1111 ETHESDLAPSDKEAPTPKEGTLTQVPLAPPPPGAPPSPAPARFTARGGRV--FTPRGVPS 1168
Query: 221 RPARGKKRPSSQRRCSSPSAARASATSAPRPTAPSSVAQPSSARSQRRRAP---CPHRAG 277
R RG RP Q C S S PT P PS + + P P G
Sbjct: 1169 RRGRGGGRPPPQ-VCPGWSPPAKSLAPKKPPTGP---LPPSKEPLKEKLIPGPLSPVARG 1224
Query: 278 GADGVGSHGARAPGE 292
G++G GS+ GE
Sbjct: 1225 GSNG-GSNVGMEDGE 1238
Score = 33.1 bits (74), Expect = 0.93
Identities = 31/125 (24%), Positives = 43/125 (34%), Gaps = 27/125 (21%)
Query: 14 PGLSGVSGLLGGEMVSVRPKETSFQGSKRGRLAAGRGLGAKVRVVGRPGNSGGRRRAG-- 71
P LS + E + + F +RG A + + VG PG GG G
Sbjct: 1307 PDLSNQNSDQANEEWETASESSDFTSERRGDKEAPPPVLLTPKAVGTPGGGGGGAVPGIS 1366
Query: 72 ---------------NRAWGSGRRGKSRRSRGPGPW----------PAGSGGPRCPSAPS 106
R++ S R G R++R PGP G GGP + P
Sbjct: 1367 AMSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPG 1426
Query: 107 DGVRR 111
G +R
Sbjct: 1427 RGDKR 1431
Score = 32.7 bits (73), Expect = 1.2
Identities = 62/252 (24%), Positives = 89/252 (35%), Gaps = 33/252 (13%)
Query: 481 LPLQAEPT---LVTGPRLTLQEAGKGLGARGG--NGQRQLIHSHAIRHGQGVDLTRPSR- 534
LP EP L+ GP + G G+ G +G+R RHG+ +P R
Sbjct: 1202 LPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMEDGERP----RRRRHGRAQQQDKPPRF 1257
Query: 535 PRLSAPPDITAFGEEGETDNLRRHPGVGPRSAHLGGLV---PLAGEAEVRDLEHRVCEVV 591
RL + A G EG+ GP A V P A+ DL ++ +
Sbjct: 1258 RRLKQERENAARGSEGKPSLTLPASAPGPEEALTTVTVAPAPRRAAAKSPDLSNQNSDQA 1317
Query: 592 VLD---GLQDQDCGVGRKAGKAYLTFTLKLQLVEGDLLGQLEARGCSGGAGGHVVAGEDA 648
+ + D R+ K +L +A G GG GG V G A
Sbjct: 1318 NEEWETASESSDFTSERRGDKE----------APPPVLLTPKAVGTPGGGGGGAVPGISA 1367
Query: 649 HAAAGELPGPPALSNTAVQTGPAGVVPHSLATAP------SSSSMGEGPGAAGGRFTQAA 702
+ LS + + G+ + P S SS G G G GGR T
Sbjct: 1368 MSRGDLSQRAKDLSKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGR-TGPG 1426
Query: 703 RGMQRAGPGGRD 714
RG +R+ P ++
Sbjct: 1427 RGDKRSWPSPKN 1438
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,305,769
Number of Sequences: 37866
Number of extensions: 2266782
Number of successful extensions: 19471
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 1137
Number of HSP's that attempted gapping in prelim test: 13543
Number of HSP's gapped (non-prelim): 6002
length of query: 725
length of database: 18,247,518
effective HSP length: 110
effective length of query: 615
effective length of database: 14,082,258
effective search space: 8660588670
effective search space used: 8660588670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.