Guide to the Human Genome
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Name: LOC339192 Sequence: fasta or formatted (257aa) NCBI GI: 169211031
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {193aa} PREDICTED: hypothetical protein
alt mRNA {257aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         35           3
 C cysteine            1.6          4           2
 D aspartate           1.2          3           1
 E glutamate           4.7         12           1
 F phenylalanine       1.9          5           1
 G glycine            17.5         45           6
 H histidine           1.6          4           1
 I isoleucine          1.9          5           1
 K lysine              1.6          4           1
 L leucine             5.1         13           1
 M methionine          0.8          2           1
 N asparagine          0.4          1           1
 P proline            12.1         31           2
 Q glutamine           2.7          7           1
 R arginine           17.9         46           6
 S serine              5.1         13           2
 T threonine           3.5          9           1
 V valine              3.9         10           2
 W tryptophan          3.1          8           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC339192             1.000   PREDICTED: hypothetical protein 
LOC339192             0.644   PREDICTED: hypothetical protein 
LOC100289661          0.066   PREDICTED: hypothetical protein 
LOC100289661          0.066   PREDICTED: hypothetical protein XP_002343723 
FLJ37078              0.054   hypothetical protein LOC222183 
LOC728431             0.048   PREDICTED: hypothetical protein 
MLL4                  0.048   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100288524          0.046   PREDICTED: hypothetical protein XP_002342748 
ARID1B                0.046   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.046   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.046   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC651986             0.044   PREDICTED: similar to forkhead box L2 
LOC100287499          0.042   PREDICTED: hypothetical protein 
LOC100287499          0.042   PREDICTED: hypothetical protein XP_002343643 
HOXD11                0.042   homeobox D11 
LOC100292370          0.042   PREDICTED: hypothetical protein 
LOC100290709          0.042   PREDICTED: hypothetical protein XP_002346752 
OTUD5                 0.042   OTU domain containing 5 isoform a 
OTUD5                 0.042   OTU domain containing 5 isoform b 
OTUD5                 0.042   OTU domain containing 5 isoform b 
PPP1R10               0.040   protein phosphatase 1, regulatory subunit 10 
LOC100292082          0.040   PREDICTED: hypothetical protein XP_002345881 
LOC100129098          0.039   PREDICTED: hypothetical protein 
LOC728431             0.039   PREDICTED: hypothetical protein 
LOC728431             0.039   PREDICTED: hypothetical protein 
FOXD1                 0.039   forkhead box D1 
TRIO                  0.037   triple functional domain (PTPRF interacting) 
AVEN                  0.037   cell death regulator aven 
LOC100288658          0.037   PREDICTED: hypothetical protein XP_002342750 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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