Guide to the Human Genome
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Name: LOC728767 Sequence: fasta or formatted (1297aa) NCBI GI: 169205732
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {1297aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.4        213           7
 C cysteine            1.1         14           1
 D aspartate           2.9         37           2
 E glutamate           3.7         48           3
 F phenylalanine       0.7          9           1
 G glycine            16.4        213           8
 H histidine           4.8         62           2
 I isoleucine          0.5          7           1
 K lysine              1.0         13           1
 L leucine             9.9        129           5
 M methionine          0.4          5           1
 N asparagine          0.3          4           1
 P proline             6.6         86           2
 Q glutamine           5.4         70           2
 R arginine           13.3        172           5
 S serine              3.3         43           2
 T threonine           2.7         35           2
 V valine              9.5        123           3
 W tryptophan          1.0         13           1
 Y tyrosine            0.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728767             1.000   PREDICTED: hypothetical protein 
LOC100134099          0.124   PREDICTED: hypothetical protein 
ELN                   0.018   elastin isoform c precursor 
ELN                   0.018   elastin isoform b precursor 
ELN                   0.018   elastin isoform d precursor 
LOC100292370          0.017   PREDICTED: hypothetical protein 
ELN                   0.017   elastin isoform a precursor 
ELN                   0.016   elastin isoform e precursor 
COL2A1                0.016   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.016   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL1A2                0.015   alpha 2 type I collagen 
COL1A1                0.015   alpha 1 type I collagen preproprotein 
LOC100289978          0.013   PREDICTED: hypothetical protein XP_002348035 
LOC100293812          0.013   PREDICTED: hypothetical protein 
HRNR                  0.012   hornerin 
MNX1                  0.012   homeo box HB9 
LOC100129463          0.012   PREDICTED: hypothetical protein 
LOC100288068          0.012   PREDICTED: hypothetical protein 
LOC100289716          0.012   PREDICTED: hypothetical protein XP_002346898 
LOC100289602          0.012   PREDICTED: hypothetical protein XP_002342755 
LOC100289602          0.012   PREDICTED: hypothetical protein 
LOC100293316          0.012   PREDICTED: hypothetical protein 
LOC100287115          0.012   PREDICTED: hypothetical protein 
LOC100287115          0.012   PREDICTED: hypothetical protein XP_002343389 
LOC100133305          0.012   PREDICTED: hypothetical protein 
LOC100133305          0.012   PREDICTED: hypothetical protein 
COL3A1                0.011   collagen type III alpha 1 preproprotein 
COL5A2                0.011   alpha 2 type V collagen preproprotein 
LOC100132345          0.011   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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