Guide to the Human Genome
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Name: LOC100288658 Sequence: fasta or formatted (231aa) NCBI GI: 239508715
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {231aa} PREDICTED: hypothetical protein XP_002342750
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.7         41           5
 C cysteine            1.3          3           1
 D aspartate           2.6          6           1
 E glutamate           4.8         11           2
 F phenylalanine       0.9          2           1
 G glycine            16.5         38           6
 H histidine           2.2          5           1
 I isoleucine          0.4          1           1
 K lysine              1.3          3           1
 L leucine             5.2         12           1
 M methionine          1.7          4           1
 N asparagine          0.9          2           1
 P proline            13.4         31           2
 Q glutamine           1.7          4           1
 R arginine           15.6         36           4
 S serine              6.5         15           2
 T threonine           3.0          7           1
 V valine              3.0          7           1
 W tryptophan          1.3          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288658          1.000   PREDICTED: hypothetical protein XP_002342750 
LOC100293776          0.976   PREDICTED: hypothetical protein 
LOC100291383          0.341   PREDICTED: hypothetical protein XP_002346891 
FLJ37078              0.068   hypothetical protein LOC222183 
TAF4                  0.066   TBP-associated factor 4 
BAT2                  0.064   HLA-B associated transcript-2 
WTIP                  0.062   Wilms tumor 1 interacting protein 
LOC100293268          0.055   PREDICTED: hypothetical protein 
LOC100133885          0.053   PREDICTED: hypothetical protein 
LOC339192             0.053   PREDICTED: hypothetical protein 
C6orf174              0.053   hypothetical protein LOC387104 
LOC100290023          0.053   PREDICTED: hypothetical protein XP_002348147 
LOC339742             0.051   PREDICTED: hypothetical protein 
MAGI2                 0.048   membrane associated guanylate kinase, WW and PDZ dom...
FOXK1                 0.048   forkhead box K1 
COL3A1                0.048   collagen type III alpha 1 preproprotein 
COL18A1               0.048   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.048   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.048   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
CLIC6                 0.048   chloride intracellular channel 6 
LOC100293596          0.048   PREDICTED: similar to mucin 
LOC100289661          0.048   PREDICTED: hypothetical protein 
LOC100289661          0.048   PREDICTED: hypothetical protein XP_002343723 
SCARF2                0.048   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.048   scavenger receptor class F, member 2 isoform 2 [Homo...
COL2A1                0.046   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.046   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100127930          0.046   PREDICTED: hypothetical protein 
LOC284988             0.046   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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