Guide to the Human Genome
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Name: LOC728052 Sequence: fasta or formatted (235aa) NCBI GI: 239754342
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         30           4
 C cysteine            4.3         10           1
 D aspartate           1.7          4           1
 E glutamate           6.4         15           2
 F phenylalanine       3.0          7           1
 G glycine            15.7         37           2
 H histidine           1.3          3           1
 I isoleucine          0.4          1           1
 K lysine              2.1          5           1
 L leucine             7.2         17           2
 M methionine          0.4          1           1
 N asparagine          2.1          5           1
 P proline             7.2         17           2
 Q glutamine           2.6          6           1
 R arginine           14.5         34           2
 S serine              9.8         23           2
 T threonine           2.6          6           1
 V valine              4.3         10           1
 W tryptophan          1.7          4           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289661          0.048   PREDICTED: hypothetical protein 
LOC100289661          0.048   PREDICTED: hypothetical protein XP_002343723 
FLJ37078              0.048   hypothetical protein LOC222183 
LOC100291076          0.041   PREDICTED: hypothetical protein XP_002347846 
FGF2                  0.037   fibroblast growth factor 2 
LOC100290023          0.037   PREDICTED: hypothetical protein XP_002348147 
MAGI2                 0.037   membrane associated guanylate kinase, WW and PDZ dom...
ALPK3                 0.032   alpha-kinase 3 
LOC100291634          0.030   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.030   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.030   PREDICTED: hypothetical protein 
SCRT1                 0.030   scratch 
AGAP2                 0.030   centaurin, gamma 1 isoform PIKE-L 
LOC284988             0.030   PREDICTED: hypothetical protein 
BBC3                  0.030   BCL2 binding component 3 isoform 1 
LOC100292234          0.028   PREDICTED: hypothetical protein 
LOC100290708          0.028   PREDICTED: hypothetical protein XP_002346660 
LOC100288955          0.028   PREDICTED: hypothetical protein XP_002342507 
LOC100289737          0.028   PREDICTED: hypothetical protein XP_002347183 
LOC728650             0.028   PREDICTED: hypothetical protein 
LOC100288678          0.028   PREDICTED: hypothetical protein XP_002343039 
C6orf174              0.026   hypothetical protein LOC387104 
LOC100293812          0.026   PREDICTED: hypothetical protein 
LOC100289716          0.026   PREDICTED: hypothetical protein XP_002346898 
LOC100129463          0.026   PREDICTED: hypothetical protein 
LOC100289602          0.026   PREDICTED: hypothetical protein XP_002342755 
LOC100129463          0.026   PREDICTED: hypothetical protein 
LOC100289602          0.026   PREDICTED: hypothetical protein 
LOC100129463          0.026   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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