Guide to the Human Genome
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Name: FXR2 Sequence: fasta or formatted (673aa) NCBI GI: 4758410
Description:

fragile X mental retardation syndrome related protein 2

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         39           3
 C cysteine            0.9          6           1
 D aspartate           5.2         35           1
 E glutamate           9.8         66           2
 F phenylalanine       2.8         19           2
 G glycine             9.8         66           2
 H histidine           1.0          7           1
 I isoleucine          3.3         22           1
 K lysine              4.0         27           2
 L leucine             6.8         46           3
 M methionine          1.6         11           2
 N asparagine          4.6         31           2
 P proline             7.1         48           3
 Q glutamine           3.1         21           2
 R arginine           10.0         67           4
 S serine              9.7         65           5
 T threonine           5.2         35           2
 V valine              6.2         42           2
 W tryptophan          0.4          3           2
 Y tyrosine            2.5         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fragile X mental retardation syndrome related protein... 
FXR1                  0.535   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.519   fragile X mental retardation-related protein 1 isofo...
FXR1                  0.423   fragile X mental retardation-related protein 1 isofo...
FMR1                  0.347   fragile X mental retardation 1 
KIAA1853              0.021   KIAA1853 protein 
SCAF1                 0.020   SR-related CTD-associated factor 1 
BAT2                  0.020   HLA-B associated transcript-2 
SRRM2                 0.019   splicing coactivator subunit SRm300 
ZC3H18                0.018   zinc finger CCCH-type containing 18 
CTR9                  0.018   SH2 domain binding protein 1 
MAP7D1                0.018   MAP7 domain containing 1 
FLJ37078              0.017   hypothetical protein LOC222183 
LOC100289661          0.017   PREDICTED: hypothetical protein 
LOC100289661          0.017   PREDICTED: hypothetical protein XP_002343723 
LOC729570             0.017   PREDICTED: hypothetical protein 
LOC729570             0.017   PREDICTED: hypothetical protein 
LOC100288496          0.017   PREDICTED: hypothetical protein XP_002342747 
LOC729570             0.017   PREDICTED: hypothetical protein 
FLG                   0.016   filaggrin 
SRRM1                 0.016   serine/arginine repetitive matrix 1 
LOC100291627          0.015   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.015   PREDICTED: hypothetical protein XP_002348034 
LOC100293596          0.015   PREDICTED: similar to mucin 
DSPP                  0.015   dentin sialophosphoprotein preproprotein 
GPATCH8               0.015   G patch domain containing 8 
CPSF6                 0.014   cleavage and polyadenylation specific factor 6, 68 ...
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
HDGF2                 0.014   hepatoma-derived growth factor-related protein 2 iso...
HDGF2                 0.014   hepatoma-derived growth factor-related protein 2 iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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