Guide to the Human Genome
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Name: LOC339192 Sequence: fasta or formatted (193aa) NCBI GI: 169211844
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {257aa} PREDICTED: hypothetical protein
alt prot {257aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.4         24           3
 C cysteine            2.6          5           2
 D aspartate           1.0          2           1
 E glutamate           3.6          7           1
 F phenylalanine       2.1          4           1
 G glycine            23.8         46           6
 H histidine           0.5          1           1
 I isoleucine          0.5          1           1
 K lysine              1.6          3           1
 L leucine             4.1          8           1
 M methionine          1.0          2           1
 N asparagine          0.5          1           1
 P proline            11.4         22           2
 Q glutamine           3.1          6           1
 R arginine           18.1         35           6
 S serine              6.2         12           2
 T threonine           2.6          5           1
 V valine              2.1          4           2
 W tryptophan          2.6          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC339192             0.856   PREDICTED: hypothetical protein 
LOC339192             0.856   PREDICTED: hypothetical protein 
LOC100289661          0.079   PREDICTED: hypothetical protein 
LOC100289661          0.079   PREDICTED: hypothetical protein XP_002343723 
LOC100292370          0.067   PREDICTED: hypothetical protein 
LOC728431             0.067   PREDICTED: hypothetical protein 
FLJ37078              0.064   hypothetical protein LOC222183 
LOC100288658          0.062   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.062   PREDICTED: hypothetical protein 
LOC100287499          0.062   PREDICTED: hypothetical protein 
LOC100287499          0.062   PREDICTED: hypothetical protein XP_002343643 
ARID1B                0.062   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.062   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.062   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
LOC100293776          0.059   PREDICTED: hypothetical protein 
OTUD5                 0.059   OTU domain containing 5 isoform a 
OTUD5                 0.059   OTU domain containing 5 isoform b 
OTUD5                 0.059   OTU domain containing 5 isoform b 
LOC100290709          0.056   PREDICTED: hypothetical protein XP_002346752 
PPP1R10               0.054   protein phosphatase 1, regulatory subunit 10 
LOC100292082          0.054   PREDICTED: hypothetical protein XP_002345881 
EWSR1                 0.051   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.051   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.051   Ewing sarcoma breakpoint region 1 isoform 1 
EWSR1                 0.051   Ewing sarcoma breakpoint region 1 isoform 2 
LOC728431             0.051   PREDICTED: hypothetical protein 
LOC728431             0.051   PREDICTED: hypothetical protein 
MLL4                  0.051   myeloid/lymphoid or mixed-lineage leukemia 4 
FOXD1                 0.051   forkhead box D1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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