Guide to the Human Genome
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Name: LOC100289661 Sequence: fasta or formatted (650aa) NCBI GI: 239751791
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {725aa} PREDICTED: hypothetical protein XP_002343723
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         66           3
 C cysteine            1.8         12           1
 D aspartate           3.5         23           2
 E glutamate           4.8         31           2
 F phenylalanine       1.8         12           2
 G glycine            14.6         95           3
 H histidine           2.5         16           1
 I isoleucine          0.8          5           1
 K lysine              2.5         16           2
 L leucine            10.8         70           4
 M methionine          0.9          6           1
 N asparagine          0.6          4           1
 P proline             9.2         60           3
 Q glutamine           3.1         20           1
 R arginine           10.9         71           3
 S serine             10.5         68           3
 T threonine           3.7         24           1
 V valine              6.2         40           3
 W tryptophan          1.5         10           1
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289661          0.842   PREDICTED: hypothetical protein XP_002343723 
LOC339192             0.026   PREDICTED: hypothetical protein 
LOC339192             0.026   PREDICTED: hypothetical protein 
LOC339192             0.024   PREDICTED: hypothetical protein 
COL1A1                0.023   alpha 1 type I collagen preproprotein 
FLJ37078              0.023   hypothetical protein LOC222183 
COL1A2                0.023   alpha 2 type I collagen 
FLJ22184              0.022   PREDICTED: hypothetical protein FLJ22184 
C10orf47              0.022   hypothetical protein LOC254427 
FLJ22184              0.022   PREDICTED: hypothetical protein LOC80164 
COL3A1                0.020   collagen type III alpha 1 preproprotein 
COL7A1                0.020   alpha 1 type VII collagen precursor 
ATXN2                 0.020   ataxin 2 
COL5A2                0.019   alpha 2 type V collagen preproprotein 
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, c...
NFATC4                0.019   nuclear factor of activated T-cells, cytoplasmic, ca...
NFKBIL2               0.019   NF-kappa-B inhibitor-like protein 2 
SRRM2                 0.019   splicing coactivator subunit SRm300 
FLJ22184              0.018   PREDICTED: hypothetical protein FLJ22184 
FXR2                  0.018   fragile X mental retardation syndrome related protein...
LOC728052             0.017   PREDICTED: hypothetical protein 
LOC728767             0.017   PREDICTED: hypothetical protein 
LOC728767             0.017   PREDICTED: hypothetical protein 
COL11A1               0.017   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.017   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.017   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100288658          0.017   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.017   PREDICTED: hypothetical protein 
BAT2                  0.017   HLA-B associated transcript-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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