Guide to the Human Genome
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Search of human proteins with 239746163

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239746163 PREDICTED: hypothetical protein XP_002343666 [Homo
sapiens]
         (72 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757149 PREDICTED: hypothetical protein [Homo sapiens]           156   3e-39
gi|239751657 PREDICTED: hypothetical protein XP_002347944 [Homo ...   156   3e-39
gi|239746163 PREDICTED: hypothetical protein XP_002343666 [Homo ...   156   3e-39
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]     33   0.037
gi|14210490 LGP1 homolog isoform 1 [Homo sapiens]                      32   0.082
gi|217330596 LGP1 homolog isoform 3 [Homo sapiens]                     32   0.082
gi|217330592 LGP1 homolog isoform 2 [Homo sapiens]                     32   0.082
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]        32   0.11 
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s...    32   0.14 
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    32   0.14 
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ...    32   0.14 
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]                32   0.14 
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ...    32   0.14 
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ...    32   0.14 
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ...    32   0.14 
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    31   0.18 
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    31   0.18 
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    31   0.18 
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]          31   0.18 
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho...    31   0.18 
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho...    31   0.18 
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho...    31   0.18 
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso...    31   0.18 
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof...    31   0.18 
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      31   0.24 
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    31   0.24 
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    31   0.24 
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]            31   0.24 
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ...    31   0.24 
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ...    31   0.24 

>gi|239757149 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 72

 Score =  156 bits (395), Expect = 3e-39
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60
          MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA
Sbjct: 1  MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60

Query: 61 RETRVRRPRNRC 72
          RETRVRRPRNRC
Sbjct: 61 RETRVRRPRNRC 72


>gi|239751657 PREDICTED: hypothetical protein XP_002347944 [Homo
          sapiens]
          Length = 72

 Score =  156 bits (395), Expect = 3e-39
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60
          MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA
Sbjct: 1  MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60

Query: 61 RETRVRRPRNRC 72
          RETRVRRPRNRC
Sbjct: 61 RETRVRRPRNRC 72


>gi|239746163 PREDICTED: hypothetical protein XP_002343666 [Homo
          sapiens]
          Length = 72

 Score =  156 bits (395), Expect = 3e-39
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 1  MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60
          MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA
Sbjct: 1  MILPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCA 60

Query: 61 RETRVRRPRNRC 72
          RETRVRRPRNRC
Sbjct: 61 RETRVRRPRNRC 72


>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
          Length = 1669

 Score = 33.5 bits (75), Expect = 0.037
 Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 11  GRRGAAGTALPRGLRTEAAVAA-QGRLRMPGVPAAGP----APPCGRGDPGTS 58
           G  GA G    +G+R E       G +  PGVP  GP     PP G+G PG S
Sbjct: 767 GEHGAIGPPGLQGIRGEPGPPGLPGSVGSPGVPGIGPPGARGPPGGQGPPGLS 819



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 11  GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           G RG  G   P G      +  +G+   PG P + P  P  +G+PG
Sbjct: 595 GSRGDTGPPGPPGYGPAGPIGDKGQAGFPGGPGS-PGLPGPKGEPG 639


>gi|14210490 LGP1 homolog isoform 1 [Homo sapiens]
          Length = 530

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPA 43
           LPWP + LG+ G  GT  PR L  +A       LR PG+ A
Sbjct: 164 LPWPGNTLGQVGTPGTKDPRALLLDA-------LRSPGLRA 197


>gi|217330596 LGP1 homolog isoform 3 [Homo sapiens]
          Length = 474

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPA 43
           LPWP + LG+ G  GT  PR L  +A       LR PG+ A
Sbjct: 164 LPWPGNTLGQVGTPGTKDPRALLLDA-------LRSPGLRA 197


>gi|217330592 LGP1 homolog isoform 2 [Homo sapiens]
          Length = 491

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPA 43
           LPWP + LG+ G  GT  PR L  +A       LR PG+ A
Sbjct: 125 LPWPGNTLGQVGTPGTKDPRALLLDA-------LRSPGLRA 158


>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
          Length = 1028

 Score = 32.0 bits (71), Expect = 0.11
 Identities = 29/64 (45%), Positives = 30/64 (46%), Gaps = 9/64 (14%)

Query: 7   PHNLGRRGAAGTALPRGLRTEAAVAA-QGRLRMPGVPA----AGPAPPCG-RGD---PGT 57
           P   G RG  GT  PRG   EA     QGR    GVP     AGP  P G RGD   PG+
Sbjct: 427 PGERGPRGTPGTRGPRGDPGEAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGDEGPPGS 486

Query: 58  SCAR 61
             AR
Sbjct: 487 EGAR 490



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/57 (38%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 6   PPHNLGRRGAAGTALP------RGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           PP + G RGA G A P       G R E   A  G    PG P      P  RG PG
Sbjct: 483 PPGSEGARGAPGPAGPPGDPGLMGERGEDGPAGNGTEGFPGFPGY----PGNRGAPG 535


>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
            sapiens]
          Length = 2971

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 4    PWPPHNLGRRGAAGTALPRGLR----TEAAVAAQGRLRMPGVPAAGPAPPCG-RGDPGTS 58
            P P  N G  G  GT  P+G+R            G+   PG P  GPA P G RGD    
Sbjct: 2113 PGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYP--GPAGPKGNRGDSIDQ 2170

Query: 59   CA 60
            CA
Sbjct: 2171 CA 2172


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
            sapiens]
          Length = 3177

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 4    PWPPHNLGRRGAAGTALPRGLR----TEAAVAAQGRLRMPGVPAAGPAPPCG-RGDPGTS 58
            P P  N G  G  GT  P+G+R            G+   PG P  GPA P G RGD    
Sbjct: 2319 PGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYP--GPAGPKGNRGDSIDQ 2376

Query: 59   CA 60
            CA
Sbjct: 2377 CA 2378


>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
            sapiens]
          Length = 2570

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 4    PWPPHNLGRRGAAGTALPRGLR----TEAAVAAQGRLRMPGVPAAGPAPPCG-RGDPGTS 58
            P P  N G  G  GT  P+G+R            G+   PG P  GPA P G RGD    
Sbjct: 1712 PGPKGNPGEPGLNGTTGPKGIRGRRGNSGPPGIVGQKGDPGYP--GPAGPKGNRGDSIDQ 1769

Query: 59   CA 60
            CA
Sbjct: 1770 CA 1771


>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
          Length = 703

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 3   LPWPPHNLGRRGAAGTALP---RGLRTEAAVAAQGRLRMPGVPAAGPAP-------PCGR 52
           +P PP   G  G  G   P   RGL+ +  V   G   +PG P  G AP       P G 
Sbjct: 180 VPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPG---LPGAPGQGGAPGPPGLPGPAGL 236

Query: 53  GDPG 56
           G PG
Sbjct: 237 GKPG 240



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 6   PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGV--PAAGPAPPCGRGDPG 56
           PP   G RG  G   P+G      V   G   +PG   P+     P  RG PG
Sbjct: 256 PPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPG 308



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 11  GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVP-----AAGPAPPCGRGDPG 56
           G  G  G   P GL   A +   G   +PG P     +  P  P  RG+PG
Sbjct: 217 GAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPG 267


>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
           [Homo sapiens]
          Length = 1650

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           LP PP   G RG  G   PRGL  E+    +G L   G P   P PP  RG  G
Sbjct: 495 LPGPPGEDGERGDDGEIGPRGLPGES--GPRGLLGPKGPPGI-PGPPGVRGMDG 545



 Score = 29.3 bits (64), Expect = 0.69
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 6    PPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPG-VPAAGPAPPCGRGDP 55
            PP  LG+RG AG+    G +  + A    G +  PG     GPA P G+  P
Sbjct: 1227 PPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1278



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           L  PP   GRRG AG    RG+  +  V  +G     G+P   P     RGD G
Sbjct: 441 LTGPPGKAGRRGRAGADGARGMPGDPGV--KGDRGFDGLPGL-PGEKGHRGDTG 491



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 15/61 (24%)

Query: 4   PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARET 63
           P PP  +G +GAAG   P G R             PG     P PP  +G PGT+    T
Sbjct: 835 PGPPGVVGPQGAAGETGPMGERGH-----------PG----PPGPPGEQGLPGTAGKEGT 879

Query: 64  R 64
           +
Sbjct: 880 K 880


>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
           [Homo sapiens]
          Length = 1629

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           LP PP   G RG  G   PRGL  E+    +G L   G P   P PP  RG  G
Sbjct: 474 LPGPPGEDGERGDDGEIGPRGLPGES--GPRGLLGPKGPPGI-PGPPGVRGMDG 524



 Score = 29.3 bits (64), Expect = 0.69
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 6    PPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPG-VPAAGPAPPCGRGDP 55
            PP  LG+RG AG+    G +  + A    G +  PG     GPA P G+  P
Sbjct: 1206 PPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1257



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           L  PP   GRRG AG    RG+  +  V  +G     G+P   P     RGD G
Sbjct: 420 LTGPPGKAGRRGRAGADGARGMPGDPGV--KGDRGFDGLPGL-PGEKGHRGDTG 470



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 15/61 (24%)

Query: 4   PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARET 63
           P PP  +G +GAAG   P G R             PG     P PP  +G PGT+    T
Sbjct: 814 PGPPGVVGPQGAAGETGPMGERGH-----------PG----PPGPPGEQGLPGTAGKEGT 858

Query: 64  R 64
           +
Sbjct: 859 K 859


>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
           [Homo sapiens]
          Length = 1736

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 23/54 (42%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           LP PP   G RG  G   PRGL  E+    +G L   G P   P PP  RG  G
Sbjct: 581 LPGPPGEDGERGDDGEIGPRGLPGES--GPRGLLGPKGPPGI-PGPPGVRGMDG 631



 Score = 29.3 bits (64), Expect = 0.69
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 6    PPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPG-VPAAGPAPPCGRGDP 55
            PP  LG+RG AG+    G +  + A    G +  PG     GPA P G+  P
Sbjct: 1313 PPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGP 1364



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           L  PP   GRRG AG    RG+  +  V  +G     G+P   P     RGD G
Sbjct: 527 LTGPPGKAGRRGRAGADGARGMPGDPGV--KGDRGFDGLPGL-PGEKGHRGDTG 577



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 15/61 (24%)

Query: 4   PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARET 63
           P PP  +G +GAAG   P G R             PG     P PP  +G PGT+    T
Sbjct: 921 PGPPGVVGPQGAAGETGPMGERGH-----------PG----PPGPPGEQGLPGTAGKEGT 965

Query: 64  R 64
           +
Sbjct: 966 K 966


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 21/74 (28%)

Query: 4   PWPPHNLGRRGAAGTALPRGLRTEA----------AVAAQGRLRMPGV-----------P 42
           P PP + G RG  G   PRGL  EA             A G+  M GV           P
Sbjct: 636 PGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP 695

Query: 43  AAGPAPPCGRGDPG 56
              P PP  +G+PG
Sbjct: 696 QGEPGPPGQQGNPG 709



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 12/53 (22%)

Query: 4    PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            P P  + G RG+AGTA P GL         GR   PG P   P P   +G PG
Sbjct: 1065 PGPVGSPGERGSAGTAGPIGL--------PGR---PG-PQGPPGPAGEKGAPG 1105



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 6    PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            PP   G +GA G   P+G      V  QG + +PG PA     P   GD G
Sbjct: 1094 PPGPAGEKGAPGEKGPQGPAGRDGV--QGPVGLPG-PAGPAGSPGEDGDKG 1141



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 4    PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            P    N G  G AG   P+G R E     +G    PG  AAG  PP  +G PG
Sbjct: 1269 PGEAGNPGPPGEAGVGGPKGERGE-----KGEAGPPG--AAG--PPGAKGPPG 1312


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
           sapiens]
          Length = 1767

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 21/74 (28%)

Query: 4   PWPPHNLGRRGAAGTALPRGLRTEA----------AVAAQGRLRMPGV-----------P 42
           P PP + G RG  G   PRGL  EA             A G+  M GV           P
Sbjct: 585 PGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP 644

Query: 43  AAGPAPPCGRGDPG 56
              P PP  +G+PG
Sbjct: 645 QGEPGPPGQQGNPG 658



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 12/53 (22%)

Query: 4    PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            P P  + G RG+AGTA P GL         GR   PG P   P P   +G PG
Sbjct: 1014 PGPVGSPGERGSAGTAGPIGL--------PGR---PG-PQGPPGPAGEKGAPG 1054



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 6    PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            PP   G +GA G   P+G      V  QG + +PG PA     P   GD G
Sbjct: 1043 PPGPAGEKGAPGEKGPQGPAGRDGV--QGPVGLPG-PAGPAGSPGEDGDKG 1090



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 4    PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            P    N G  G AG   P+G R E     +G    PG  AAG  PP  +G PG
Sbjct: 1218 PGEAGNPGPPGEAGVGGPKGERGE-----KGEAGPPG--AAG--PPGAKGPPG 1261


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
           sapiens]
          Length = 1806

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 21/74 (28%)

Query: 4   PWPPHNLGRRGAAGTALPRGLRTEA----------AVAAQGRLRMPGV-----------P 42
           P PP + G RG  G   PRGL  EA             A G+  M GV           P
Sbjct: 624 PGPPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP 683

Query: 43  AAGPAPPCGRGDPG 56
              P PP  +G+PG
Sbjct: 684 QGEPGPPGQQGNPG 697



 Score = 28.5 bits (62), Expect = 1.2
 Identities = 22/53 (41%), Positives = 25/53 (47%), Gaps = 12/53 (22%)

Query: 4    PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            P P  + G RG+AGTA P GL         GR   PG P   P P   +G PG
Sbjct: 1053 PGPVGSPGERGSAGTAGPIGL--------PGR---PG-PQGPPGPAGEKGAPG 1093



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 6    PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            PP   G +GA G   P+G      V  QG + +PG PA     P   GD G
Sbjct: 1082 PPGPAGEKGAPGEKGPQGPAGRDGV--QGPVGLPG-PAGPAGSPGEDGDKG 1129



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 9/53 (16%)

Query: 4    PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            P    N G  G AG   P+G R E     +G    PG  AAG  PP  +G PG
Sbjct: 1257 PGEAGNPGPPGEAGVGGPKGERGE-----KGEAGPPG--AAG--PPGAKGPPG 1300


>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
          Length = 2944

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 4    PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPA-----AGPAPPCGRGDPGTS 58
            P PP ++G RG  G    +G R        G   +PG P        P P   RG+ G +
Sbjct: 2724 PGPPGSVGPRGPEGLQGQKGERGPPGERVVGAPGVPGAPGERGEQGRPGPAGPRGEKGEA 2783

Query: 59   CARETRVR 66
               E  +R
Sbjct: 2784 ALTEDDIR 2791



 Score = 29.3 bits (64), Expect = 0.69
 Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 3/52 (5%)

Query: 7    PHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTS 58
            P   G RG  G   P G R  A     GR  +PG P   P PP   G PG S
Sbjct: 2406 PGQTGPRGEMGQPGPSGERGLAG--PPGREGIPG-PLGPPGPPGSVGPPGAS 2454



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 7/60 (11%)

Query: 4    PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAA-----GPAPPCGRGDPGTS 58
            P  P   G +G+ G   PRG   E     +G    PG P       GP  P  +GDPG S
Sbjct: 1316 PGTPGAPGLKGSPGLPGPRGDPGERG--PRGPKGEPGAPGQVIGGEGPGLPGRKGDPGPS 1373



 Score = 26.9 bits (58), Expect = 3.4
 Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 4    PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCG-RGDPGTS 58
            P PP   G  G AG   P GL+ E      G    PG    GP    G  G PG S
Sbjct: 2185 PGPPGAPGLAGPAGPQGPSGLKGE-----PGETGPPGRGLTGPTGAVGLPGPPGPS 2235


>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1751

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 6    PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            P  NLG +G  G+  P+G + E      G +  P   A GPA    +G+PG
Sbjct: 1158 PKGNLGSKGERGSPGPKGEKGE-----PGSIFSPDGGALGPAQKGAKGEPG 1203



 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 11   GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
            G +G+ G   P G R E+ +A       PG PA  P PP   G PG
Sbjct: 980  GHKGSKGAPGPAGARGESGLAGA-----PG-PAGPPGPPGPPGPPG 1019



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 3    LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAG-PAPPCGRGDPG 56
            LP PP   G RG  G   P+G          G    PG+   G   PP   G PG
Sbjct: 1352 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPG 1406


>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1336

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 6   PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           P  NLG +G  G+  P+G + E      G +  P   A GPA    +G+PG
Sbjct: 743 PKGNLGSKGERGSPGPKGEKGE-----PGSIFSPDGGALGPAQKGAKGEPG 788



 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 11  GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           G +G+ G   P G R E+ +A       PG PA  P PP   G PG
Sbjct: 565 GHKGSKGAPGPAGARGESGLAGA-----PG-PAGPPGPPGPPGPPG 604



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAG-PAPPCGRGDPG 56
           LP PP   G RG  G   P+G          G    PG+   G   PP   G PG
Sbjct: 937 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPG 991


>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
           sapiens]
          Length = 1516

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)

Query: 6   PPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           P  NLG +G  G+  P+G + E      G +  P   A GPA    +G+PG
Sbjct: 923 PKGNLGSKGERGSPGPKGEKGE-----PGSIFSPDGGALGPAQKGAKGEPG 968



 Score = 29.6 bits (65), Expect = 0.53
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 6/46 (13%)

Query: 11  GRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           G +G+ G   P G R E+ +A       PG PA  P PP   G PG
Sbjct: 745 GHKGSKGAPGPAGARGESGLAGA-----PG-PAGPPGPPGPPGPPG 784



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 3    LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAG-PAPPCGRGDPG 56
            LP PP   G RG  G   P+G          G    PG+   G   PP   G PG
Sbjct: 1117 LPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGPPGPPGPPG 1171


>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
           isoform B' [Homo sapiens]
          Length = 240

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 10/53 (18%)

Query: 13  RGAAGTA----LPRGLRTEAAVAAQGRLRMPGVPA------AGPAPPCGRGDP 55
           RG  G +     P+G  T AA AA     + G P        GP PP GRG P
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184


>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
           B [Homo sapiens]
          Length = 231

 Score = 31.2 bits (69), Expect = 0.18
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 10/53 (18%)

Query: 13  RGAAGTA----LPRGLRTEAAVAAQGRLRMPGVPA------AGPAPPCGRGDP 55
           RG  G +     P+G  T AA AA     + G P        GP PP GRG P
Sbjct: 132 RGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAP 184


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 4    PWPPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPGVPA-AGPAPPCGR-GDPG 56
            P PP + G +G +G + P G R    +  A G+  + G+P   GP  P GR GD G
Sbjct: 1120 PGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAG 1175



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 4   PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPG-VPAAGPA-PPCGRGDPGTSCA 60
           P  P  +G +G AG   PRG  +E     +G    PG   AAGPA  P   G PG   A
Sbjct: 343 PGFPGAVGAKGEAGPQGPRG--SEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGA 399



 Score = 28.1 bits (61), Expect = 1.5
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 7/58 (12%)

Query: 4   PWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVP-AAGPAPPCG----RGDPG 56
           P PP   G+ G  G   P+G   E   A  G   +PG P A GPA   G    +G PG
Sbjct: 568 PGPPGARGQAGVMGFPGPKGAAGEPGKA--GERGVPGPPGAVGPAGKDGEAGAQGPPG 623



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 4   PWPPHNLGRRGAAGTALPRGLRTEAAVAAQ----GRLRMPGVPAAGPAPPCGRGDPGT 57
           P  P + G  GA G   P G++     A +    G    PG P   P PP  RG PG+
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPG-PTGLPGPPGERGGPGS 492



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 24/71 (33%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 6   PPHNLGRRGAAGTALPRGLRTEAA-------VAAQGRLRMPGVPA----AGPAPPCGR-- 52
           P    G RG+ G A P+G   EA          A+G    PG P      GP  P G+  
Sbjct: 504 PKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG 563

Query: 53  --GDPGTSCAR 61
             G PG   AR
Sbjct: 564 RPGPPGPPGAR 574



 Score = 27.3 bits (59), Expect = 2.6
 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 11  GRRGAAGTALPRGLRTEAA-VAAQGRLRMPGV-----PAAGPAPPCGRGDPGTS 58
           G RGAAG   P+G R +A    A G     GV     P   P P    GD G S
Sbjct: 731 GERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGES 784



 Score = 26.6 bits (57), Expect = 4.5
 Identities = 20/56 (35%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 6   PPHNLGRRGAAGTALPRG-LRTEAAVAAQGRLRMPGVPA--AGPAPPCGRGDPGTS 58
           PP   G  GA+G   PRG           G    PG P     P P   RG PGT+
Sbjct: 204 PPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTA 259


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 3    LPWPPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPGVPA-AGPAPPCGR-GDPG 56
            LP PP   G +GA+G A P G R     V   G+    G+P   GP  P GR G+ G
Sbjct: 1141 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1197



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 13/59 (22%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVP----AAGPAPPCG-RGDPG 56
           LP  P   G +GA+G A P G        AQG   + G+P    AAG A P G RGD G
Sbjct: 721 LPGTPGTDGPKGASGPAGPPG--------AQGPPGLQGMPGERGAAGIAGPKGDRGDVG 771



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 11  GRRGAAGTALPRGLR-------TEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           G RGAAG A P+G R        E A    G   + G P   P P    G+ G
Sbjct: 753 GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG-PIGPPGPAGANGEKG 804


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 3    LPWPPHNLGRRGAAGTALPRGLR-TEAAVAAQGRLRMPGVPA-AGPAPPCGR-GDPG 56
            LP PP   G +GA+G A P G R     V   G+    G+P   GP  P GR G+ G
Sbjct: 1072 LPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETG 1128



 Score = 28.9 bits (63), Expect = 0.91
 Identities = 25/59 (42%), Positives = 29/59 (49%), Gaps = 13/59 (22%)

Query: 3   LPWPPHNLGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVP----AAGPAPPCG-RGDPG 56
           LP  P   G +GA+G A P G        AQG   + G+P    AAG A P G RGD G
Sbjct: 652 LPGTPGTDGPKGASGPAGPPG--------AQGPPGLQGMPGERGAAGIAGPKGDRGDVG 702



 Score = 25.8 bits (55), Expect = 7.7
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 8/53 (15%)

Query: 11  GRRGAAGTALPRGLR-------TEAAVAAQGRLRMPGVPAAGPAPPCGRGDPG 56
           G RGAAG A P+G R        E A    G   + G P   P P    G+ G
Sbjct: 684 GERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTG-PIGPPGPAGANGEKG 735


>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 254

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 10  LGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARETR 64
           LGR   AG   P G R +    AQG+LR+P  P+   AP  G  +P    ++E R
Sbjct: 127 LGRDRGAGRMSPHGKRADG--QAQGQLRLP--PSTPRAPDRGGCEPRAPRSQELR 177


>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
           sapiens]
          Length = 254

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 10  LGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARETR 64
           LGR   AG   P G R +    AQG+LR+P  P+   AP  G  +P    ++E R
Sbjct: 127 LGRDRGAGRMSPHGKRADG--QAQGQLRLP--PSTPRAPDRGGCEPRAPRSQELR 177


>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
           sapiens]
          Length = 254

 Score = 30.8 bits (68), Expect = 0.24
 Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 4/55 (7%)

Query: 10  LGRRGAAGTALPRGLRTEAAVAAQGRLRMPGVPAAGPAPPCGRGDPGTSCARETR 64
           LGR   AG   P G R +    AQG+LR+P  P+   AP  G  +P    ++E R
Sbjct: 127 LGRDRGAGRMSPHGKRADG--QAQGQLRLP--PSTPRAPDRGGCEPRAPRSQELR 177


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.469 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,912,743
Number of Sequences: 37866
Number of extensions: 188641
Number of successful extensions: 2039
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 143
Number of HSP's that attempted gapping in prelim test: 1673
Number of HSP's gapped (non-prelim): 515
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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