Guide to the Human Genome
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Name: LOC100289074 Sequence: fasta or formatted (474aa) NCBI GI: 239745981
Description:

PREDICTED: hypothetical protein XP_002343632

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         68           2
 C cysteine           11.6         55           2
 D aspartate           1.9          9           1
 E glutamate           2.1         10           1
 F phenylalanine       0.2          1           1
 G glycine            12.0         57           2
 H histidine           2.1         10           1
 I isoleucine          1.9          9           1
 K lysine              0.2          1           1
 L leucine             5.3         25           1
 M methionine          0.8          4           1
 N asparagine          0.4          2           1
 P proline             5.1         24           1
 Q glutamine           4.6         22           1
 R arginine           14.6         69           2
 S serine              9.3         44           2
 T threonine           1.5          7           1
 V valine             11.6         55           1
 W tryptophan          0.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343632 
KRTAP10-6             0.044   keratin associated protein 10-6 
KRTAP10-4             0.037   keratin associated protein 10-4 
TNXB                  0.035   tenascin XB isoform 1 precursor 
KRTAP10-5             0.034   keratin associated protein 10-5 
KRTAP5-3              0.033   keratin associated protein 5-3 
KRTAP10-7             0.033   keratin associated protein 10-7 
KRTAP10-9             0.030   keratin associated protein 10-9 
KRTAP4-9              0.029   keratin associated protein 4-9 
KRTAP10-1             0.028   keratin associated protein 10-1 
SCARF1                0.028   scavenger receptor class F, member 1 isoform 3 precu...
SCARF1                0.028   scavenger receptor class F, member 1 isoform 1 precu...
MEGF6                 0.028   EGF-like-domain, multiple 3 
KRTAP10-8             0.028   keratin associated protein 10-8 
KRTAP4-9              0.028   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP10-12            0.028   keratin associated protein 10-12 
KRTAP10-11            0.027   keratin associated protein 10-11 
FBN3                  0.026   fibrillin 3 precursor 
KRTAP4-11             0.025   keratin associated protein 4-11 
LOC728318             0.024   PREDICTED: hypothetical protein 
KRTAP4-8              0.023   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.023   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-9              0.023   PREDICTED: keratin associated protein 4-9 isoform 2...
LOC728318             0.023   PREDICTED: hypothetical protein 
LOC728318             0.023   PREDICTED: hypothetical protein 
KRTAP4-8              0.022   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.022   PREDICTED: similar to keratin associated protein 4-...
SCARF1                0.021   scavenger receptor class F, member 1 isoform 5 prec...
KRTAP4-12             0.021   keratin associated protein 4-12 
LOC728341             0.020   PREDICTED: keratin-associated protein 9-2-like 1-li...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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