Guide to the Human Genome
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Name: LOC728341 Sequence: fasta or formatted (169aa) NCBI GI: 169212012
Description:

PREDICTED: keratin-associated protein 9-2-like 1-like

Referenced in:

Keratins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.8          3           1
 C cysteine           32.5         55           2
 D aspartate           0.0          0           0
 E glutamate           0.6          1           1
 F phenylalanine       0.6          1           1
 G glycine             3.0          5           1
 H histidine           1.8          3           1
 I isoleucine          1.2          2           1
 K lysine              0.6          1           1
 L leucine             1.2          2           1
 M methionine          0.6          1           1
 N asparagine          1.2          2           1
 P proline            11.2         19           1
 Q glutamine           7.7         13           1
 R arginine            3.6          6           2
 S serine             12.4         21           2
 T threonine          14.8         25           2
 V valine              3.0          5           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: keratin-associated protein 9-2-like 1-li... 
KRTAP9-2              0.923   keratin associated protein 9.2 
KRTAP9-3              0.868   keratin associated protein 9.3 
KRTAP9-8              0.851   keratin associated protein 9.8 
LOC732428             0.771   PREDICTED: keratin-associated protein 9-2-like 2-li...
LOC728318             0.759   PREDICTED: hypothetical protein 
LOC728318             0.759   PREDICTED: hypothetical protein 
LOC728318             0.759   PREDICTED: hypothetical protein 
KRTAP9-4              0.751   keratin associated protein 9-4 
KRTAP9-9              0.647   keratin associated protein 9-9 
KRTAP4-12             0.488   keratin associated protein 4-12 
KRTAP4-8              0.468   PREDICTED: keratin associated protein 4-8 isoform 3...
KRTAP4-8              0.468   PREDICTED: keratin associated protein 4-8 isoform 1...
LOC100134267          0.468   PREDICTED: similar to keratin associated protein 4-...
LOC100134267          0.468   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-3              0.465   keratin associated protein 4-3 
KRTAP4-8              0.460   PREDICTED: keratin associated protein 4-8 
KRTAP4-9              0.453   keratin associated protein 4-9 
KRTAP4-9              0.453   PREDICTED: keratin associated protein 4-9 isoform 1...
KRTAP4-8              0.448   PREDICTED: keratin associated protein 4-8 isoform 2...
LOC100134267          0.448   PREDICTED: similar to keratin associated protein 4-...
KRTAP4-11             0.445   keratin associated protein 4-11 
KRTAP4-9              0.445   PREDICTED: keratin associated protein 4-9 isoform 2...
KRTAP4-4              0.435   keratin associated protein 4.4 
KRTAP4-8              0.433   PREDICTED: keratin associated protein 4.8 
KRTAP4-8              0.433   keratin associated protein 4.8 
KRTAP4-5              0.428   keratin associated protein 4-5 
KRTAP4-2              0.376   keratin associated protein 4-2 
KRTAP4-7              0.366   keratin associated protein 4-7 
KRTAP4-7              0.366   PREDICTED: keratin associated protein 4-7 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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