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Search of human proteins with 239745851
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo
sapiens]
(500 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo ... 1030 0.0
gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo ... 923 0.0
gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo ... 923 0.0
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 892 0.0
gi|17998698 GATA binding protein 5 [Homo sapiens] 46 9e-05
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 45 1e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 45 1e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 45 1e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 45 1e-04
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 4e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 43 8e-04
gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo s... 42 0.001
gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo sa... 42 0.001
gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo s... 42 0.001
gi|163914392 glioma tumor suppressor candidate region gene 1 [Ho... 41 0.002
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 41 0.003
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 41 0.003
gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens] 41 0.003
gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens] 41 0.003
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 41 0.003
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 40 0.004
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 0.005
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 0.005
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 40 0.006
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 40 0.006
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 40 0.006
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 40 0.006
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 40 0.006
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 40 0.006
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 39 0.008
>gi|239745851 PREDICTED: hypothetical protein XP_002343605 [Homo
sapiens]
Length = 500
Score = 1030 bits (2662), Expect = 0.0
Identities = 500/500 (100%), Positives = 500/500 (100%)
Query: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR
Sbjct: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
Query: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR
Sbjct: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
Query: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL
Sbjct: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
Query: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE
Sbjct: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
Query: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG
Sbjct: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
Query: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE
Sbjct: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
Query: 421 QEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPGCISN 480
QEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPGCISN
Sbjct: 421 QEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPGCISN 480
Query: 481 SSSGSFSASSSQAVSPVSGL 500
SSSGSFSASSSQAVSPVSGL
Sbjct: 481 SSSGSFSASSSQAVSPVSGL 500
>gi|239751352 PREDICTED: hypothetical protein XP_002347815 [Homo
sapiens]
Length = 697
Score = 923 bits (2386), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR
Sbjct: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
Query: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR
Sbjct: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
Query: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL
Sbjct: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
Query: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE
Sbjct: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
Query: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG
Sbjct: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
Query: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE
Sbjct: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
Query: 421 QEVGSKALRGSPAHSSPALHPGVPG 445
QEVGSKALRGSPAHSSPALHPGVPG
Sbjct: 421 QEVGSKALRGSPAHSSPALHPGVPG 445
>gi|239740933 PREDICTED: hypothetical protein XP_002344111 [Homo
sapiens]
Length = 697
Score = 923 bits (2386), Expect = 0.0
Identities = 445/445 (100%), Positives = 445/445 (100%)
Query: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR
Sbjct: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
Query: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR
Sbjct: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
Query: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL
Sbjct: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
Query: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE
Sbjct: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
Query: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG
Sbjct: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
Query: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE
Sbjct: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
Query: 421 QEVGSKALRGSPAHSSPALHPGVPG 445
QEVGSKALRGSPAHSSPALHPGVPG
Sbjct: 421 QEVGSKALRGSPAHSSPALHPGVPG 445
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 892 bits (2305), Expect = 0.0
Identities = 434/445 (97%), Positives = 435/445 (97%), Gaps = 1/445 (0%)
Query: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR
Sbjct: 1 MGSWEEGITFCKLPTRGHRTLRTEGAEVTPACGYALAEGPREKKARLRGLRRPACVAGPR 60
Query: 61 PPPQSQASSQCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
PPPQSQASS CGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR
Sbjct: 61 PPPQSQASSHCGGKMSAHCCRMSSTTWFWNTMVMGMLVSSTSGRSSVGPNTMATLCTDMR 120
Query: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK
Sbjct: 121 FCSPCSITLWQGCWKSIRRVSWLGAGSERTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEK 180
Query: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL
Sbjct: 181 GKRGSGSSRKKSFRAPGSPACGPGRRPAGTPMPAALTPAAHVPRASTARMHCCTKRGTRL 240
Query: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE
Sbjct: 241 LSRSHSAASAQPNTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLE 300
Query: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG
Sbjct: 301 ELAELLPKRSLDPKSTLLLSLSSGGSSADWIPIASERRGLEPAAEALGSAYQLLDALSNG 360
Query: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE
Sbjct: 361 LMPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWE 420
Query: 421 QEVGSKALR-GSPAHSSPALHPGVP 444
QEVGSKALR SP H A P +P
Sbjct: 421 QEVGSKALRVPSPVHKQVAALPLLP 445
>gi|17998698 GATA binding protein 5 [Homo sapiens]
Length = 397
Score = 45.8 bits (107), Expect = 9e-05
Identities = 49/171 (28%), Positives = 70/171 (40%), Gaps = 18/171 (10%)
Query: 149 RTKSRTQRLRRAWSCNSGCSLMAAMNWRKCEKGKRGSGSSRKKSFRAPGSPACGPGRRPA 208
R + R RRA C + C WR+ +G+ P ACG +
Sbjct: 228 RPQKRLSSSRRAGLCCTNCHTTNTTLWRRNSEGE-------------PVCNACGLYMKLH 274
Query: 209 GTPMPAALTPAAHVPRASTARMHCCTKRGTRLLSRSHSAA-SAQPNTWSRAEAHQLLPSL 267
G P P A+ + R + RG+ +R+ SA+ SA +T S A + PSL
Sbjct: 275 GVPRPLAMKKESIQTRKRKPKT-IAKARGSSGSTRNASASPSAVASTDSSAATSKAKPSL 333
Query: 268 RPVPVPGP-RPPQASGTFDVALLPQRLQCGPPLEELAELLPKRSLDPKSTL 317
PGP PQASG D +L P L+ E+ A P + P++ L
Sbjct: 334 ASPVCPGPSMAPQASGQEDDSLAPGHLEFKFEPEDFA--FPSTAPSPQAGL 382
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGRR 447
G E L G P P +PG G++GVRG+ GS L G+P ++ P GVPG
Sbjct: 67 GPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCS 126
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+ + P LP T G PG+PG
Sbjct: 127 GSKGEQGFP---GLPGTLGYPGIPG 148
Score = 37.0 bits (84), Expect = 0.042
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PGA G G G +G K +GS H P PG G P T LP RG
Sbjct: 1250 PGAPGPPGPPG--SHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRG 1307
Query: 467 SPGLPGLRPGCISNSSSGSFSAS 489
PG G PG + F S
Sbjct: 1308 DPGFQGF-PGVKGEKGNPGFLGS 1329
Score = 36.2 bits (82), Expect = 0.071
Identities = 36/101 (35%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 392 GSEALRGSSAPHPLVPGAVGAE--GVRGL--WEQEVGSKALRGSPAHS------------ 435
G+ +G S P P VPG+ G+ G+RG W GSK RG P
Sbjct: 366 GARGPQGPSGP-PGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG 424
Query: 436 SPAL--HPGVPGRRDQRRSEVEPP-TLALPLTRGSPGLPGL 473
SP L PG PG PP LP GSPG+PG+
Sbjct: 425 SPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGV 465
Score = 35.8 bits (81), Expect = 0.093
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG +G G+ G + G +G PA + P PG PG +R + E + LP G
Sbjct: 723 PGKMGEPGLPG----KPGLPGAKGEPAVAMPG-GPGTPGFPGERGNSGEHGEIGLPGLPG 777
Query: 467 SPGLPG 472
PG PG
Sbjct: 778 LPGTPG 783
Score = 34.7 bits (78), Expect = 0.21
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 27/122 (22%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALH------PGVPG 445
GSE ++G+ PG +G +G++G + ++G RG + PG PG
Sbjct: 309 GSEGVKGNRG----FPGLMGEDGIKGQ-KGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPG 363
Query: 446 RRDQR--RSEVEPPTL------ALPLTRGSPGLPGL--------RPGCISNSSSGSFSAS 489
R R + PP + + P RG+PG PGL RPG + + GS +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 490 SS 491
S
Sbjct: 424 GS 425
Score = 34.7 bits (78), Expect = 0.21
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G++ + G+ P PG G G + G G P H P PG+PG +
Sbjct: 628 GTQGVPGAPGP----PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
LP G PG+PG+
Sbjct: 684 DP------GLPGPDGEPGIPGI 699
Score = 34.3 bits (77), Expect = 0.27
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG----RRDQRRSEVEPPTL 459
P +PG G GV+G+ ++ G+ L+GSP PG PG + D + TL
Sbjct: 486 PGLPGLPGLHGVKGIPGRQ-GAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETL 544
Query: 460 ALPLTRGSPGLPGLR 474
G PG PGLR
Sbjct: 545 QPEGQVGVPGDPGLR 559
Score = 33.9 bits (76), Expect = 0.35
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 363 PGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE 422
PG + V+ D+ P L+ + G + RG VPG G +G++GL
Sbjct: 942 PGPSEISHVIGDKGEP----GLKGFAGNPGEKGNRG-------VPGMPGLKGLKGLPGPA 990
Query: 423 V-----GSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGL 473
G G+P PG G S+ + TL P G PGLPG+
Sbjct: 991 GPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGI 1046
Score = 33.9 bits (76), Expect = 0.35
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 30/99 (30%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG------ 445
GS L G PH G +G +G++GL +G +RG P PG PG
Sbjct: 1107 GSPGLPGKPGPH----GDLGFKGIKGL----LGPPGIRGPPGL------PGFPGSPGPMG 1152
Query: 446 -RRDQRRSEVEPPT---------LALPLTRGSPGLPGLR 474
R DQ R + P A P RG+PG G +
Sbjct: 1153 IRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAK 1191
Score = 32.7 bits (73), Expect = 0.79
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG G +G +G G+K G P PG+PG+ ++ EP +A+P G
Sbjct: 702 PGPPGPKGDQGF----PGTKGSLGCPGKMG---EPGLPGKPGLPGAKGEP-AVAMPGGPG 753
Query: 467 SPGLPGLR 474
+PG PG R
Sbjct: 754 TPGFPGER 761
Score = 32.7 bits (73), Expect = 0.79
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G+ GS P PG +G +G G+ + G+ + P P PG PG + +
Sbjct: 1320 EKGNPGFLGSIGP----PGPIGPKGPPGV-RGDPGTLKIISLPGSPGPPGTPGEPGMQGE 1374
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
P L RG PG G +PG
Sbjct: 1375 PGPPGPPGNLGPCGPRGKPGKDG-KPG 1400
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 391 AGSEALRGS--SAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
AG RG S +P PG G G G GSK RG+ A PG+PG
Sbjct: 990 AGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMP-GSKGKRGTLGFPGRAGRPGLPGIHG 1048
Query: 449 QRRSEVEP-----PTLALPLTRGSPGLPG 472
+ + EP P G PGLPG
Sbjct: 1049 LQGDKGEPGYSEGTRPGPPGPTGDPGLPG 1077
Score = 31.6 bits (70), Expect = 1.8
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 25/82 (30%)
Query: 397 RGSSAPH-----PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
RG+S H P +PG G G GL RG P P G PGR
Sbjct: 761 RGNSGEHGEIGLPGLPGLPGTPGNEGL-------DGPRGDPGQPGPPGEQGPPGRC---- 809
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
+E P RG+ GLPGL
Sbjct: 810 --IEGP-------RGAQGLPGL 822
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PGA+G G G G+ RGSP G PG + ++ + P + G
Sbjct: 897 PGAIGPPGPPG----NPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIG 952
Query: 467 SPGLPGLRPGCISNSSSGSFSASSSQAVSPVSGL 500
G PGL+ + G+ + + GL
Sbjct: 953 DKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGL 986
Score = 31.6 bits (70), Expect = 1.8
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTR 465
+PG G +G GL G + G+ PG PG ++ + +
Sbjct: 1162 IPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIE 1221
Query: 466 GSPGLPGLRPGCISNSSSGS 485
G PG PGL PG I +G+
Sbjct: 1222 GFPGPPGL-PGAIIPGQTGN 1240
Score = 31.2 bits (69), Expect = 2.3
Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPG-- 445
EAG S P P PG G G G GS G P P PG+PG
Sbjct: 641 EAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIG 700
Query: 446 -------RRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ DQ + +L P G PGLPG +PG
Sbjct: 701 FPGPPGPKGDQGFPGTKG-SLGCPGKMGEPGLPG-KPG 736
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 407 PGAVGAEGVRGL--------WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
PG +GA G GL ++ G K +G+P PG G + +P T
Sbjct: 1291 PGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGT 1350
Query: 459 LALPLTRGSPGLPG 472
L + GSPG PG
Sbjct: 1351 LKIISLPGSPGPPG 1364
Score = 30.8 bits (68), Expect = 3.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 402 PHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLAL 461
P + G GA+G+ GL G K +G + P PG+PG
Sbjct: 806 PGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIPGL----------DRSGF 851
Query: 462 PLTRGSPGLPG 472
P GSPG+PG
Sbjct: 852 PGETGSPGIPG 862
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 399 SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
S P PG G G+ G ++ G G P H PA G PG
Sbjct: 1059 SEGTRPGPPGPTGDPGLPGDMGKK-GEMGQPGPPGHLGPAGPEGAPG------------- 1104
Query: 459 LALPLTRGSPGLPGLRPG 476
+ GSPGLPG +PG
Sbjct: 1105 -----SPGSPGLPG-KPG 1116
Score = 30.4 bits (67), Expect = 3.9
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G L+G G VG G GL Q G K L G P +P + G+PG + +
Sbjct: 532 GDPGLKGEKGETLQPEGQVGVPGDPGLRGQP-GRKGLDGIPG--TPGVK-GLPGPKGELA 587
Query: 452 SEVEPPTLALPLTRGSPGLPG 472
E P GSPG PG
Sbjct: 588 LSGEKGDQGPPGDPGSPGSPG 608
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 22/72 (30%)
Query: 403 HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALP 462
+P PG +G G G+ +G G+ P +PG PG+
Sbjct: 875 YPGNPGILGPPGEDGV----IGMMGFPGAIGPPGPPGNPGTPGQ---------------- 914
Query: 463 LTRGSPGLPGLR 474
RGSPG+PG++
Sbjct: 915 --RGSPGIPGVK 924
Score = 29.3 bits (64), Expect = 8.7
Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
GS GS P +PG+ G G G G G P + PGV G +
Sbjct: 418 GSPGCAGS----PGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKG--- 470
Query: 452 SEVEPPTLAL--PLTRGSPGLPGLRPG 476
EP L P G PGLPGL PG
Sbjct: 471 ---EPGLLCTQCPYIPGPPGLPGL-PG 493
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGRR 447
G E L G P P +PG G++GVRG+ GS L G+P ++ P GVPG
Sbjct: 67 GPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCS 126
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+ + P LP T G PG+PG
Sbjct: 127 GSKGEQGFP---GLPGTLGYPGIPG 148
Score = 37.0 bits (84), Expect = 0.042
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PGA G G G +G K +GS H P PG G P T LP RG
Sbjct: 1250 PGAPGPPGPPG--SHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRG 1307
Query: 467 SPGLPGLRPGCISNSSSGSFSAS 489
PG G PG + F S
Sbjct: 1308 DPGFQGF-PGVKGEKGNPGFLGS 1329
Score = 36.2 bits (82), Expect = 0.071
Identities = 36/101 (35%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 392 GSEALRGSSAPHPLVPGAVGAE--GVRGL--WEQEVGSKALRGSPAHS------------ 435
G+ +G S P P VPG+ G+ G+RG W GSK RG P
Sbjct: 366 GARGPQGPSGP-PGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG 424
Query: 436 SPAL--HPGVPGRRDQRRSEVEPP-TLALPLTRGSPGLPGL 473
SP L PG PG PP LP GSPG+PG+
Sbjct: 425 SPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGV 465
Score = 35.8 bits (81), Expect = 0.093
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG +G G+ G + G +G PA + P PG PG +R + E + LP G
Sbjct: 723 PGKMGEPGLPG----KPGLPGAKGEPAVAMPG-GPGTPGFPGERGNSGEHGEIGLPGLPG 777
Query: 467 SPGLPG 472
PG PG
Sbjct: 778 LPGTPG 783
Score = 34.7 bits (78), Expect = 0.21
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 27/122 (22%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALH------PGVPG 445
GSE ++G+ PG +G +G++G + ++G RG + PG PG
Sbjct: 309 GSEGVKGNRG----FPGLMGEDGIKGQ-KGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPG 363
Query: 446 RRDQR--RSEVEPPTL------ALPLTRGSPGLPGL--------RPGCISNSSSGSFSAS 489
R R + PP + + P RG+PG PGL RPG + + GS +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 490 SS 491
S
Sbjct: 424 GS 425
Score = 34.7 bits (78), Expect = 0.21
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G++ + G+ P PG G G + G G P H P PG+PG +
Sbjct: 628 GTQGVPGAPGP----PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
LP G PG+PG+
Sbjct: 684 DP------GLPGPDGEPGIPGI 699
Score = 34.3 bits (77), Expect = 0.27
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG----RRDQRRSEVEPPTL 459
P +PG G GV+G+ ++ G+ L+GSP PG PG + D + TL
Sbjct: 486 PGLPGLPGLHGVKGIPGRQ-GAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETL 544
Query: 460 ALPLTRGSPGLPGLR 474
G PG PGLR
Sbjct: 545 QPEGQVGVPGDPGLR 559
Score = 33.9 bits (76), Expect = 0.35
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 363 PGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE 422
PG + V+ D+ P L+ + G + RG VPG G +G++GL
Sbjct: 942 PGPSEISHVIGDKGEP----GLKGFAGNPGEKGNRG-------VPGMPGLKGLKGLPGPA 990
Query: 423 V-----GSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGL 473
G G+P PG G S+ + TL P G PGLPG+
Sbjct: 991 GPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGI 1046
Score = 33.9 bits (76), Expect = 0.35
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 30/99 (30%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG------ 445
GS L G PH G +G +G++GL +G +RG P PG PG
Sbjct: 1107 GSPGLPGKPGPH----GDLGFKGIKGL----LGPPGIRGPPGL------PGFPGSPGPMG 1152
Query: 446 -RRDQRRSEVEPPT---------LALPLTRGSPGLPGLR 474
R DQ R + P A P RG+PG G +
Sbjct: 1153 IRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAK 1191
Score = 32.7 bits (73), Expect = 0.79
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG G +G +G G+K G P PG+PG+ ++ EP +A+P G
Sbjct: 702 PGPPGPKGDQGF----PGTKGSLGCPGKMG---EPGLPGKPGLPGAKGEP-AVAMPGGPG 753
Query: 467 SPGLPGLR 474
+PG PG R
Sbjct: 754 TPGFPGER 761
Score = 32.7 bits (73), Expect = 0.79
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G+ GS P PG +G +G G+ + G+ + P P PG PG + +
Sbjct: 1320 EKGNPGFLGSIGP----PGPIGPKGPPGV-RGDPGTLKIISLPGSPGPPGTPGEPGMQGE 1374
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
P L RG PG G +PG
Sbjct: 1375 PGPPGPPGNLGPCGPRGKPGKDG-KPG 1400
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 391 AGSEALRGS--SAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
AG RG S +P PG G G G GSK RG+ A PG+PG
Sbjct: 990 AGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMP-GSKGKRGTLGFPGRAGRPGLPGIHG 1048
Query: 449 QRRSEVEP-----PTLALPLTRGSPGLPG 472
+ + EP P G PGLPG
Sbjct: 1049 LQGDKGEPGYSEGTRPGPPGPTGDPGLPG 1077
Score = 31.6 bits (70), Expect = 1.8
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 25/82 (30%)
Query: 397 RGSSAPH-----PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
RG+S H P +PG G G GL RG P P G PGR
Sbjct: 761 RGNSGEHGEIGLPGLPGLPGTPGNEGL-------DGPRGDPGQPGPPGEQGPPGRC---- 809
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
+E P RG+ GLPGL
Sbjct: 810 --IEGP-------RGAQGLPGL 822
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PGA+G G G G+ RGSP G PG + ++ + P + G
Sbjct: 897 PGAIGPPGPPG----NPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIG 952
Query: 467 SPGLPGLRPGCISNSSSGSFSASSSQAVSPVSGL 500
G PGL+ + G+ + + GL
Sbjct: 953 DKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGL 986
Score = 31.6 bits (70), Expect = 1.8
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTR 465
+PG G +G GL G + G+ PG PG ++ + +
Sbjct: 1162 IPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIE 1221
Query: 466 GSPGLPGLRPGCISNSSSGS 485
G PG PGL PG I +G+
Sbjct: 1222 GFPGPPGL-PGAIIPGQTGN 1240
Score = 31.2 bits (69), Expect = 2.3
Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPG-- 445
EAG S P P PG G G G GS G P P PG+PG
Sbjct: 641 EAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIG 700
Query: 446 -------RRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ DQ + +L P G PGLPG +PG
Sbjct: 701 FPGPPGPKGDQGFPGTKG-SLGCPGKMGEPGLPG-KPG 736
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 407 PGAVGAEGVRGL--------WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
PG +GA G GL ++ G K +G+P PG G + +P T
Sbjct: 1291 PGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGT 1350
Query: 459 LALPLTRGSPGLPG 472
L + GSPG PG
Sbjct: 1351 LKIISLPGSPGPPG 1364
Score = 30.8 bits (68), Expect = 3.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 402 PHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLAL 461
P + G GA+G+ GL G K +G + P PG+PG
Sbjct: 806 PGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIPGL----------DRSGF 851
Query: 462 PLTRGSPGLPG 472
P GSPG+PG
Sbjct: 852 PGETGSPGIPG 862
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 399 SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
S P PG G G+ G ++ G G P H PA G PG
Sbjct: 1059 SEGTRPGPPGPTGDPGLPGDMGKK-GEMGQPGPPGHLGPAGPEGAPG------------- 1104
Query: 459 LALPLTRGSPGLPGLRPG 476
+ GSPGLPG +PG
Sbjct: 1105 -----SPGSPGLPG-KPG 1116
Score = 30.4 bits (67), Expect = 3.9
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G L+G G VG G GL Q G K L G P +P + G+PG + +
Sbjct: 532 GDPGLKGEKGETLQPEGQVGVPGDPGLRGQP-GRKGLDGIPG--TPGVK-GLPGPKGELA 587
Query: 452 SEVEPPTLALPLTRGSPGLPG 472
E P GSPG PG
Sbjct: 588 LSGEKGDQGPPGDPGSPGSPG 608
Score = 30.4 bits (67), Expect = 3.9
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--------VGSKALRGSPAHSSPALHPGV 443
G ++G P P PG +G G RG ++ G K +GS PA G+
Sbjct: 1367 GEPGMQGEPGP-PGPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGL 1425
Query: 444 PGRRDQRRSEVEPPT 458
PG + +R P T
Sbjct: 1426 PGLKGKRGDSGSPAT 1440
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 22/72 (30%)
Query: 403 HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALP 462
+P PG +G G G+ +G G+ P +PG PG+
Sbjct: 875 YPGNPGILGPPGEDGV----IGMMGFPGAIGPPGPPGNPGTPGQ---------------- 914
Query: 463 LTRGSPGLPGLR 474
RGSPG+PG++
Sbjct: 915 --RGSPGIPGVK 924
Score = 29.3 bits (64), Expect = 8.7
Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
GS GS P +PG+ G G G G G P + PGV G +
Sbjct: 418 GSPGCAGS----PGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKG--- 470
Query: 452 SEVEPPTLAL--PLTRGSPGLPGLRPG 476
EP L P G PGLPGL PG
Sbjct: 471 ---EPGLLCTQCPYIPGPPGLPGL-PG 493
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGRR 447
G E L G P P +PG G++GVRG+ GS L G+P ++ P GVPG
Sbjct: 67 GPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCS 126
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+ + P LP T G PG+PG
Sbjct: 127 GSKGEQGFP---GLPGTLGYPGIPG 148
Score = 37.0 bits (84), Expect = 0.042
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PGA G G G +G K +GS H P PG G P T LP RG
Sbjct: 1250 PGAPGPPGPPG--SHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRG 1307
Query: 467 SPGLPGLRPGCISNSSSGSFSAS 489
PG G PG + F S
Sbjct: 1308 DPGFQGF-PGVKGEKGNPGFLGS 1329
Score = 36.2 bits (82), Expect = 0.071
Identities = 36/101 (35%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 392 GSEALRGSSAPHPLVPGAVGAE--GVRGL--WEQEVGSKALRGSPAHS------------ 435
G+ +G S P P VPG+ G+ G+RG W GSK RG P
Sbjct: 366 GARGPQGPSGP-PGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG 424
Query: 436 SPAL--HPGVPGRRDQRRSEVEPP-TLALPLTRGSPGLPGL 473
SP L PG PG PP LP GSPG+PG+
Sbjct: 425 SPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGV 465
Score = 35.8 bits (81), Expect = 0.093
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG +G G+ G + G +G PA + P PG PG +R + E + LP G
Sbjct: 723 PGKMGEPGLPG----KPGLPGAKGEPAVAMPG-GPGTPGFPGERGNSGEHGEIGLPGLPG 777
Query: 467 SPGLPG 472
PG PG
Sbjct: 778 LPGTPG 783
Score = 34.7 bits (78), Expect = 0.21
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 27/122 (22%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALH------PGVPG 445
GSE ++G+ PG +G +G++G + ++G RG + PG PG
Sbjct: 309 GSEGVKGNRG----FPGLMGEDGIKGQ-KGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPG 363
Query: 446 RRDQR--RSEVEPPTL------ALPLTRGSPGLPGL--------RPGCISNSSSGSFSAS 489
R R + PP + + P RG+PG PGL RPG + + GS +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 490 SS 491
S
Sbjct: 424 GS 425
Score = 34.7 bits (78), Expect = 0.21
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G++ + G+ P PG G G + G G P H P PG+PG +
Sbjct: 628 GTQGVPGAPGP----PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
LP G PG+PG+
Sbjct: 684 DP------GLPGPDGEPGIPGI 699
Score = 34.3 bits (77), Expect = 0.27
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG----RRDQRRSEVEPPTL 459
P +PG G GV+G+ ++ G+ L+GSP PG PG + D + TL
Sbjct: 486 PGLPGLPGLHGVKGIPGRQ-GAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETL 544
Query: 460 ALPLTRGSPGLPGLR 474
G PG PGLR
Sbjct: 545 QPEGQVGVPGDPGLR 559
Score = 33.9 bits (76), Expect = 0.35
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 363 PGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE 422
PG + V+ D+ P L+ + G + RG VPG G +G++GL
Sbjct: 942 PGPSEISHVIGDKGEP----GLKGFAGNPGEKGNRG-------VPGMPGLKGLKGLPGPA 990
Query: 423 V-----GSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGL 473
G G+P PG G S+ + TL P G PGLPG+
Sbjct: 991 GPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGI 1046
Score = 33.9 bits (76), Expect = 0.35
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 30/99 (30%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG------ 445
GS L G PH G +G +G++GL +G +RG P PG PG
Sbjct: 1107 GSPGLPGKPGPH----GDLGFKGIKGL----LGPPGIRGPPGL------PGFPGSPGPMG 1152
Query: 446 -RRDQRRSEVEPPT---------LALPLTRGSPGLPGLR 474
R DQ R + P A P RG+PG G +
Sbjct: 1153 IRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAK 1191
Score = 32.7 bits (73), Expect = 0.79
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG G +G +G G+K G P PG+PG+ ++ EP +A+P G
Sbjct: 702 PGPPGPKGDQGF----PGTKGSLGCPGKMG---EPGLPGKPGLPGAKGEP-AVAMPGGPG 753
Query: 467 SPGLPGLR 474
+PG PG R
Sbjct: 754 TPGFPGER 761
Score = 32.7 bits (73), Expect = 0.79
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G+ GS P PG +G +G G+ + G+ + P P PG PG + +
Sbjct: 1320 EKGNPGFLGSIGP----PGPIGPKGPPGV-RGDPGTLKIISLPGSPGPPGTPGEPGMQGE 1374
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
P L RG PG G +PG
Sbjct: 1375 PGPPGPPGNLGPCGPRGKPGKDG-KPG 1400
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 391 AGSEALRGS--SAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
AG RG S +P PG G G G GSK RG+ A PG+PG
Sbjct: 990 AGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMP-GSKGKRGTLGFPGRAGRPGLPGIHG 1048
Query: 449 QRRSEVEP-----PTLALPLTRGSPGLPG 472
+ + EP P G PGLPG
Sbjct: 1049 LQGDKGEPGYSEGTRPGPPGPTGDPGLPG 1077
Score = 31.6 bits (70), Expect = 1.8
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 25/82 (30%)
Query: 397 RGSSAPH-----PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
RG+S H P +PG G G GL RG P P G PGR
Sbjct: 761 RGNSGEHGEIGLPGLPGLPGTPGNEGL-------DGPRGDPGQPGPPGEQGPPGRC---- 809
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
+E P RG+ GLPGL
Sbjct: 810 --IEGP-------RGAQGLPGL 822
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PGA+G G G G+ RGSP G PG + ++ + P + G
Sbjct: 897 PGAIGPPGPPG----NPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIG 952
Query: 467 SPGLPGLRPGCISNSSSGSFSASSSQAVSPVSGL 500
G PGL+ + G+ + + GL
Sbjct: 953 DKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGL 986
Score = 31.6 bits (70), Expect = 1.8
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTR 465
+PG G +G GL G + G+ PG PG ++ + +
Sbjct: 1162 IPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIE 1221
Query: 466 GSPGLPGLRPGCISNSSSGS 485
G PG PGL PG I +G+
Sbjct: 1222 GFPGPPGL-PGAIIPGQTGN 1240
Score = 31.2 bits (69), Expect = 2.3
Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPG-- 445
EAG S P P PG G G G GS G P P PG+PG
Sbjct: 641 EAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIG 700
Query: 446 -------RRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ DQ + +L P G PGLPG +PG
Sbjct: 701 FPGPPGPKGDQGFPGTKG-SLGCPGKMGEPGLPG-KPG 736
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 407 PGAVGAEGVRGL--------WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
PG +GA G GL ++ G K +G+P PG G + +P T
Sbjct: 1291 PGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGT 1350
Query: 459 LALPLTRGSPGLPG 472
L + GSPG PG
Sbjct: 1351 LKIISLPGSPGPPG 1364
Score = 30.8 bits (68), Expect = 3.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 402 PHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLAL 461
P + G GA+G+ GL G K +G + P PG+PG
Sbjct: 806 PGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIPGL----------DRSGF 851
Query: 462 PLTRGSPGLPG 472
P GSPG+PG
Sbjct: 852 PGETGSPGIPG 862
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 399 SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
S P PG G G+ G ++ G G P H PA G PG
Sbjct: 1059 SEGTRPGPPGPTGDPGLPGDMGKK-GEMGQPGPPGHLGPAGPEGAPG------------- 1104
Query: 459 LALPLTRGSPGLPGLRPG 476
+ GSPGLPG +PG
Sbjct: 1105 -----SPGSPGLPG-KPG 1116
Score = 30.4 bits (67), Expect = 3.9
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G L+G G VG G GL Q G K L G P +P + G+PG + +
Sbjct: 532 GDPGLKGEKGETLQPEGQVGVPGDPGLRGQP-GRKGLDGIPG--TPGVK-GLPGPKGELA 587
Query: 452 SEVEPPTLALPLTRGSPGLPG 472
E P GSPG PG
Sbjct: 588 LSGEKGDQGPPGDPGSPGSPG 608
Score = 30.4 bits (67), Expect = 3.9
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--------VGSKALRGSPAHSSPALHPGV 443
G ++G P P PG +G G RG ++ G K +GS PA G+
Sbjct: 1367 GEPGMQGEPGP-PGPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGL 1425
Query: 444 PGRRDQRRSEVEPPT 458
PG + +R P T
Sbjct: 1426 PGLKGKRGDSGSPAT 1440
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 22/72 (30%)
Query: 403 HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALP 462
+P PG +G G G+ +G G+ P +PG PG+
Sbjct: 875 YPGNPGILGPPGEDGV----IGMMGFPGAIGPPGPPGNPGTPGQ---------------- 914
Query: 463 LTRGSPGLPGLR 474
RGSPG+PG++
Sbjct: 915 --RGSPGIPGVK 924
Score = 29.3 bits (64), Expect = 8.7
Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
GS GS P +PG+ G G G G G P + PGV G +
Sbjct: 418 GSPGCAGS----PGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKG--- 470
Query: 452 SEVEPPTLAL--PLTRGSPGLPGLRPG 476
EP L P G PGLPGL PG
Sbjct: 471 ---EPGLLCTQCPYIPGPPGLPGL-PG 493
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 45.4 bits (106), Expect = 1e-04
Identities = 32/85 (37%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGRR 447
G E L G P P +PG G++GVRG+ GS L G+P ++ P GVPG
Sbjct: 67 GPEGLPGPQGPKGFPGLPGLTGSKGVRGISGLPGFSGSPGLPGTPGNTGPYGLVGVPGCS 126
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+ + P LP T G PG+PG
Sbjct: 127 GSKGEQGFP---GLPGTLGYPGIPG 148
Score = 37.0 bits (84), Expect = 0.042
Identities = 28/83 (33%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PGA G G G +G K +GS H P PG G P T LP RG
Sbjct: 1250 PGAPGPPGPPG--SHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTPGLPGPRG 1307
Query: 467 SPGLPGLRPGCISNSSSGSFSAS 489
PG G PG + F S
Sbjct: 1308 DPGFQGF-PGVKGEKGNPGFLGS 1329
Score = 36.2 bits (82), Expect = 0.071
Identities = 36/101 (35%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 392 GSEALRGSSAPHPLVPGAVGAE--GVRGL--WEQEVGSKALRGSPAHS------------ 435
G+ +G S P P VPG+ G+ G+RG W GSK RG P
Sbjct: 366 GARGPQGPSGP-PGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCAG 424
Query: 436 SPAL--HPGVPGRRDQRRSEVEPP-TLALPLTRGSPGLPGL 473
SP L PG PG PP LP GSPG+PG+
Sbjct: 425 SPGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGV 465
Score = 35.8 bits (81), Expect = 0.093
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG +G G+ G + G +G PA + P PG PG +R + E + LP G
Sbjct: 723 PGKMGEPGLPG----KPGLPGAKGEPAVAMPG-GPGTPGFPGERGNSGEHGEIGLPGLPG 777
Query: 467 SPGLPG 472
PG PG
Sbjct: 778 LPGTPG 783
Score = 34.7 bits (78), Expect = 0.21
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 27/122 (22%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALH------PGVPG 445
GSE ++G+ PG +G +G++G + ++G RG + PG PG
Sbjct: 309 GSEGVKGNRG----FPGLMGEDGIKGQ-KGDIGPPGFRGPTEYYDTYQEKGDEGTPGPPG 363
Query: 446 RRDQR--RSEVEPPTL------ALPLTRGSPGLPGL--------RPGCISNSSSGSFSAS 489
R R + PP + + P RG+PG PGL RPG + + GS +
Sbjct: 364 PRGARGPQGPSGPPGVPGSPGSSRPGLRGAPGWPGLKGSKGERGRPGKDAMGTPGSPGCA 423
Query: 490 SS 491
S
Sbjct: 424 GS 425
Score = 34.7 bits (78), Expect = 0.21
Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G++ + G+ P PG G G + G G P H P PG+PG +
Sbjct: 628 GTQGVPGAPGP----PGEAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCG 683
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
LP G PG+PG+
Sbjct: 684 DP------GLPGPDGEPGIPGI 699
Score = 34.3 bits (77), Expect = 0.27
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG----RRDQRRSEVEPPTL 459
P +PG G GV+G+ ++ G+ L+GSP PG PG + D + TL
Sbjct: 486 PGLPGLPGLHGVKGIPGRQ-GAAGLKGSPGSPGNTGLPGFPGFPGAQGDPGLKGEKGETL 544
Query: 460 ALPLTRGSPGLPGLR 474
G PG PGLR
Sbjct: 545 QPEGQVGVPGDPGLR 559
Score = 33.9 bits (76), Expect = 0.35
Identities = 32/116 (27%), Positives = 45/116 (38%), Gaps = 16/116 (13%)
Query: 363 PGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE 422
PG + V+ D+ P L+ + G + RG VPG G +G++GL
Sbjct: 942 PGPSEISHVIGDKGEP----GLKGFAGNPGEKGNRG-------VPGMPGLKGLKGLPGPA 990
Query: 423 V-----GSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGL 473
G G+P PG G S+ + TL P G PGLPG+
Sbjct: 991 GPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMPGSKGKRGTLGFPGRAGRPGLPGI 1046
Score = 33.9 bits (76), Expect = 0.35
Identities = 31/99 (31%), Positives = 40/99 (40%), Gaps = 30/99 (30%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG------ 445
GS L G PH G +G +G++GL +G +RG P PG PG
Sbjct: 1107 GSPGLPGKPGPH----GDLGFKGIKGL----LGPPGIRGPPGL------PGFPGSPGPMG 1152
Query: 446 -RRDQRRSEVEPPT---------LALPLTRGSPGLPGLR 474
R DQ R + P A P RG+PG G +
Sbjct: 1153 IRGDQGRDGIPGPAGEKGETGLLRAPPGPRGNPGAQGAK 1191
Score = 32.7 bits (73), Expect = 0.79
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 8/68 (11%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG G +G +G G+K G P PG+PG+ ++ EP +A+P G
Sbjct: 702 PGPPGPKGDQGF----PGTKGSLGCPGKMG---EPGLPGKPGLPGAKGEP-AVAMPGGPG 753
Query: 467 SPGLPGLR 474
+PG PG R
Sbjct: 754 TPGFPGER 761
Score = 32.7 bits (73), Expect = 0.79
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G+ GS P PG +G +G G+ + G+ + P P PG PG + +
Sbjct: 1320 EKGNPGFLGSIGP----PGPIGPKGPPGV-RGDPGTLKIISLPGSPGPPGTPGEPGMQGE 1374
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
P L RG PG G +PG
Sbjct: 1375 PGPPGPPGNLGPCGPRGKPGKDG-KPG 1400
Score = 32.0 bits (71), Expect = 1.3
Identities = 30/89 (33%), Positives = 35/89 (39%), Gaps = 8/89 (8%)
Query: 391 AGSEALRGS--SAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
AG RG S +P PG G G G GSK RG+ A PG+PG
Sbjct: 990 AGPPGPRGDLGSTGNPGEPGLRGIPGSMGNMGMP-GSKGKRGTLGFPGRAGRPGLPGIHG 1048
Query: 449 QRRSEVEP-----PTLALPLTRGSPGLPG 472
+ + EP P G PGLPG
Sbjct: 1049 LQGDKGEPGYSEGTRPGPPGPTGDPGLPG 1077
Score = 31.6 bits (70), Expect = 1.8
Identities = 28/82 (34%), Positives = 32/82 (39%), Gaps = 25/82 (30%)
Query: 397 RGSSAPH-----PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
RG+S H P +PG G G GL RG P P G PGR
Sbjct: 761 RGNSGEHGEIGLPGLPGLPGTPGNEGL-------DGPRGDPGQPGPPGEQGPPGRC---- 809
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
+E P RG+ GLPGL
Sbjct: 810 --IEGP-------RGAQGLPGL 822
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 4/94 (4%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PGA+G G G G+ RGSP G PG + ++ + P + G
Sbjct: 897 PGAIGPPGPPG----NPGTPGQRGSPGIPGVKGQRGTPGAKGEQGDKGNPGPSEISHVIG 952
Query: 467 SPGLPGLRPGCISNSSSGSFSASSSQAVSPVSGL 500
G PGL+ + G+ + + GL
Sbjct: 953 DKGEPGLKGFAGNPGEKGNRGVPGMPGLKGLKGL 986
Score = 31.6 bits (70), Expect = 1.8
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTR 465
+PG G +G GL G + G+ PG PG ++ + +
Sbjct: 1162 IPGPAGEKGETGLLRAPPGPRGNPGAQGAKGDRGAPGFPGLPGRKGAMGDAGPRGPTGIE 1221
Query: 466 GSPGLPGLRPGCISNSSSGS 485
G PG PGL PG I +G+
Sbjct: 1222 GFPGPPGL-PGAIIPGQTGN 1240
Score = 31.2 bits (69), Expect = 2.3
Identities = 32/98 (32%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPG-- 445
EAG S P P PG G G G GS G P P PG+PG
Sbjct: 641 EAGPRGELSVSTPVPGPPGPPGPPGHPGPQGPPGIPGSLGKCGDPGLPGPDGEPGIPGIG 700
Query: 446 -------RRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ DQ + +L P G PGLPG +PG
Sbjct: 701 FPGPPGPKGDQGFPGTKG-SLGCPGKMGEPGLPG-KPG 736
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 407 PGAVGAEGVRGL--------WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
PG +GA G GL ++ G K +G+P PG G + +P T
Sbjct: 1291 PGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGT 1350
Query: 459 LALPLTRGSPGLPG 472
L + GSPG PG
Sbjct: 1351 LKIISLPGSPGPPG 1364
Score = 30.8 bits (68), Expect = 3.0
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 14/71 (19%)
Query: 402 PHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLAL 461
P + G GA+G+ GL G K +G + P PG+PG
Sbjct: 806 PGRCIEGPRGAQGLPGL----NGLKGQQGRRGKTGPKGDPGIPGL----------DRSGF 851
Query: 462 PLTRGSPGLPG 472
P GSPG+PG
Sbjct: 852 PGETGSPGIPG 862
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/78 (32%), Positives = 30/78 (38%), Gaps = 20/78 (25%)
Query: 399 SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
S P PG G G+ G ++ G G P H PA G PG
Sbjct: 1059 SEGTRPGPPGPTGDPGLPGDMGKK-GEMGQPGPPGHLGPAGPEGAPG------------- 1104
Query: 459 LALPLTRGSPGLPGLRPG 476
+ GSPGLPG +PG
Sbjct: 1105 -----SPGSPGLPG-KPG 1116
Score = 30.4 bits (67), Expect = 3.9
Identities = 27/81 (33%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G L+G G VG G GL Q G K L G P +P + G+PG + +
Sbjct: 532 GDPGLKGEKGETLQPEGQVGVPGDPGLRGQP-GRKGLDGIPG--TPGVK-GLPGPKGELA 587
Query: 452 SEVEPPTLALPLTRGSPGLPG 472
E P GSPG PG
Sbjct: 588 LSGEKGDQGPPGDPGSPGSPG 608
Score = 30.4 bits (67), Expect = 3.9
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--------VGSKALRGSPAHSSPALHPGV 443
G ++G P P PG +G G RG ++ G K +GS PA G+
Sbjct: 1367 GEPGMQGEPGP-PGPPGNLGPCGPRGKPGKDGKPGTPGPAGEKGNKGSKGEPGPAGSDGL 1425
Query: 444 PGRRDQRRSEVEPPT 458
PG + +R P T
Sbjct: 1426 PGLKGKRGDSGSPAT 1440
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 22/72 (30%)
Query: 403 HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALP 462
+P PG +G G G+ +G G+ P +PG PG+
Sbjct: 875 YPGNPGILGPPGEDGV----IGMMGFPGAIGPPGPPGNPGTPGQ---------------- 914
Query: 463 LTRGSPGLPGLR 474
RGSPG+PG++
Sbjct: 915 --RGSPGIPGVK 924
Score = 29.3 bits (64), Expect = 8.7
Identities = 30/87 (34%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
GS GS P +PG+ G G G G G P + PGV G +
Sbjct: 418 GSPGCAGS----PGLPGSPGPPGPPGDIVFRKGPPGDHGLPGYLGSPGIPGVDGPKG--- 470
Query: 452 SEVEPPTLAL--PLTRGSPGLPGLRPG 476
EP L P G PGLPGL PG
Sbjct: 471 ---EPGLLCTQCPYIPGPPGLPGL-PG 493
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 43.5 bits (101), Expect = 4e-04
Identities = 44/147 (29%), Positives = 58/147 (39%), Gaps = 23/147 (15%)
Query: 338 RGLEPAAEALGSAYQLLDALSNGLMPGADDGLRVVLDQA--------HPLAFWSLRLWEQ 389
R L P +++ + + + D S + A GL L QA P + + +
Sbjct: 1201 RRLAPGMDSVQTFFAVDDGPS---LDQAVSGLATALCQASFTTQPRPEPCPVYCPKGQKG 1257
Query: 390 EAGSEALRGSSAP--HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
E G LRG P P +PG GA G +G GS +G PG PGR
Sbjct: 1258 EPGEMGLRGQVGPPGDPGLPGRTGAPGPQG----PPGSATAKGERGFPGADGRPGSPGRA 1313
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPGLR 474
P T P +GSPGLPG R
Sbjct: 1314 GN------PGTPGAPGLKGSPGLPGPR 1334
Score = 40.8 bits (94), Expect = 0.003
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQ--EVGSKALRGSPAHSSPALHPGVPGRR 447
+ GS +G P PGA+G +G RG E G K RG P + PGV GR
Sbjct: 1460 QPGSPGEQGPRGP----PGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRP 1515
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+ E P +G PG PG
Sbjct: 1516 GAKGPEGPPGPTGRQGEKGEPGRPG 1540
Score = 36.6 bits (83), Expect = 0.055
Identities = 30/84 (35%), Positives = 36/84 (42%), Gaps = 11/84 (13%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G+ L+GS P +PG G G RG G K G+P PG+PGR+
Sbjct: 1320 GAPGLKGS----PGLPGPRGDPGERG----PRGPKGEPGAPGQVIGGEGPGLPGRKGDPG 1371
Query: 452 SEVEP---PTLALPLTRGSPGLPG 472
P L P RG PGLPG
Sbjct: 1372 PSGPPGPRGPLGDPGPRGPPGLPG 1395
Score = 36.2 bits (82), Expect = 0.071
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 13/85 (15%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
+ GS L+G ++ G G G +G ++G + RG P G PG +
Sbjct: 2509 DVGSAGLKGDKGDSAVILGPPGPRGAKG----DMGERGPRGLDGDKGPRGDNGDPGDKGS 2564
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLR 474
+ P +GS GLPGLR
Sbjct: 2565 KGE---------PGDKGSAGLPGLR 2580
Score = 35.0 bits (79), Expect = 0.16
Identities = 29/85 (34%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
E G E RG P P V G G +G RG + G L G P + P+ G G+
Sbjct: 1744 ERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLD-GRSGLDGKPGAAGPSGPNGAAGKA 1802
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+P LP RG GLPG
Sbjct: 1803 G------DPGRDGLPGLRGEQGLPG 1821
Score = 34.7 bits (78), Expect = 0.21
Identities = 41/155 (26%), Positives = 53/155 (34%), Gaps = 37/155 (23%)
Query: 326 SSADWIPIASERRGLEPAAEALGSAYQLLDALSNGLMPGADDGLRVVLDQAHPLAFWSLR 385
SS ++P+ RRG P D G + + P+ F R
Sbjct: 1966 SSGSFLPVPERRRG-----------------------PKGDSGEQGPPGKEGPIGFPGER 2002
Query: 386 LWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG 445
+ + G G P L G G G GL E G + G P + G PG
Sbjct: 2003 GLKGDRGDP---GPQGPPGLALGERGPPGPSGL-AGEPGKPGIPGLPGRAGGVGEAGRPG 2058
Query: 446 RRDQRRSEVE--------PPTLALPLTRGSPGLPG 472
R +R + E PP LP T G PG PG
Sbjct: 2059 ERGERGEKGERGEQGRDGPP--GLPGTPGPPGPPG 2091
Score = 32.7 bits (73), Expect = 0.79
Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEV-GSKALRGSPAHSSPALHPGVPGRRD 448
E G L+G+ PG+ G +G +G ++ V G K RG P +PG+PG R
Sbjct: 2106 EQGPPGLKGAKGE----PGSNGDQGPKG--DRGVPGIKGDRGEPGPRGQDGNPGLPGERG 2159
Query: 449 QRRSEVEPPTLALPLTRGSPGLPG 472
E +P L RG PG G
Sbjct: 2160 MAGPEGKP---GLQGPRGPPGPVG 2180
Score = 32.7 bits (73), Expect = 0.79
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 398 GSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPP 457
GS P P PG G G+ GL G+ + G P + P G PG +R P
Sbjct: 2377 GSPGP-PGPPGVKGDLGLPGL----PGAPGVVGFPGQTGPRGEMGQPGPSGERGLAGPPG 2431
Query: 458 TLALPLTRGSPGLPG 472
+P G PG PG
Sbjct: 2432 REGIPGPLGPPGPPG 2446
Score = 32.3 bits (72), Expect = 1.0
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 14/104 (13%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G + RG P PG G G+ E G L GSP P G PG++ + +
Sbjct: 1400 GDKGDRGERGP----PGP----GEGGIAPGEPGLPGLPGSPGPQGPV---GPPGKKGE-K 1447
Query: 452 SEVEPPTLALPLTRGSPGLPGLR--PGCISNSSSGSFSASSSQA 493
+ E LP GSPG G R PG I F +A
Sbjct: 1448 GDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEA 1491
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/76 (34%), Positives = 32/76 (42%), Gaps = 8/76 (10%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEP 456
RG + P V G G G GL VG + G P PG PGR + +
Sbjct: 2217 RGLTGPTGAV-GLPGPPGPSGL----VGPQGSPGLPGQVGETGKPGAPGRDGASGKDGDR 2271
Query: 457 PTLALPLTRGSPGLPG 472
+ +P GSPGLPG
Sbjct: 2272 GSPGVP---GSPGLPG 2284
Score = 32.0 bits (71), Expect = 1.3
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 398 GSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEP 456
GS+ P P PG+VG G GL G K RG P PGVPG +R + P
Sbjct: 2719 GSAGP-PGPPGSVGPRGPEGL----QGQKGERGPPGERVVGA-PGVPGAPGERGEQGRP 2771
Score = 31.2 bits (69), Expect = 2.3
Identities = 29/88 (32%), Positives = 36/88 (40%), Gaps = 19/88 (21%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLW-----EQEVGSKALRGSPAHSSPALHPGVP 444
E G L G + P PG G +G +G E G K RG+P P PG+P
Sbjct: 1834 EDGKPGLNGKNG-EPGDPGEDGRKGEKGDSGASGREGRDGPKGERGAPGILGPQGPPGLP 1892
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPG 472
G V PP +G PG+PG
Sbjct: 1893 G-------PVGPP------GQGFPGVPG 1907
Score = 30.8 bits (68), Expect = 3.0
Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 11/119 (9%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGR 446
G + L G S P P +PG G +G GL + + G +G S + G G
Sbjct: 1815 GEQGLPGPSGP-PGLPGKPGEDGKPGLNGKNGEPGDPGEDGRKGEKGDSGASGREGRDGP 1873
Query: 447 RDQRRSE-----VEPPTLALPLTRGSPGLPGLRPGCISNSSSGSFSASSSQAVSPVSGL 500
+ +R + PP L P+ G PG+ G G + Q + GL
Sbjct: 1874 KGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQGLPGERGL 1932
Score = 29.6 bits (65), Expect = 6.7
Identities = 32/96 (33%), Positives = 36/96 (37%), Gaps = 16/96 (16%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGLW--EQEVGSKALRGSPAHSSPALH-------- 440
AGS L G + PGA G EG G + E G G PA PA+
Sbjct: 1503 AGSRGLPGVAGR----PGAKGPEGPPGPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGD 1558
Query: 441 --PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
P P + E PP L LP G G PG R
Sbjct: 1559 VGPAGPRGATGVQGERGPPGLVLPGDPGPKGDPGDR 1594
Score = 29.6 bits (65), Expect = 6.7
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG G G RG + EVG K G P PG+PG+ +R P +G
Sbjct: 1621 PGPPGPVGPRGR-DGEVGEKGDEGPPGD------PGLPGKAGERGLRGAPGVRGPVGEKG 1673
Query: 467 SPGLPG 472
G PG
Sbjct: 1674 DQGDPG 1679
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 42.7 bits (99), Expect = 8e-04
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
+ G +G + P P PG VG +G G E G RG P P G+PG +
Sbjct: 980 QRGETGFQGKTGP-PGPPGVVGPQGPTG----ETGPMGERGHPGPPGPPGEQGLPGLAGK 1034
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
++ +P LP G PGL G PG
Sbjct: 1035 EGTKGDPGPAGLPGKDGPPGLRGF-PG 1060
Score = 35.8 bits (81), Expect = 0.093
Identities = 31/85 (36%), Positives = 36/85 (42%), Gaps = 15/85 (17%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
AGS+ RG +PG G +G RG G K RG P S P PG PG
Sbjct: 612 AGSDGARG-------MPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGP---PGPPGDDG 661
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGL 473
+R + E LP G PG GL
Sbjct: 662 ERGDDGEVGPRGLP---GEPGPRGL 683
Score = 33.9 bits (76), Expect = 0.35
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 17/103 (16%)
Query: 390 EAGSEALRGSSAP--HPLVPGAVGAEGVRGL--------------WEQEVGSKALRGSPA 433
E G + G P +P G GA+G+RGL ++ ++G K RG
Sbjct: 773 EKGGQGPPGPQGPIGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIG 832
Query: 434 HSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
P G G + + +P L P +G G+PGL PG
Sbjct: 833 PPGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGL-PG 874
Score = 32.3 bits (72), Expect = 1.0
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 11/88 (12%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
+ G+ +G P GA+G G +G +G L G P P HPG G +
Sbjct: 722 QQGNPGAQGLPGPQ----GAIGPPGEKG----PLGKPGLPGMPGADGPPGHPGKEGPPGE 773
Query: 450 RRSEVEP---PTLALPLTRGSPGLPGLR 474
+ + P + P RG G G+R
Sbjct: 774 KGGQGPPGPQGPIGYPGPRGVKGADGIR 801
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQR 450
AG E +G G G EG G + G +G+P P G+PG ++
Sbjct: 1398 AGPEGRQGEKG----AKGEAGLEGPPG----KTGPIGPQGAPGKPGPDGLRGIPGPVGEQ 1449
Query: 451 RSEVEPPTLALPLTRGSPGLPGLR 474
P P G PGLPGL+
Sbjct: 1450 GLPGSPGPDGPPGPMGPPGLPGLK 1473
Score = 29.6 bits (65), Expect = 6.7
Identities = 26/83 (31%), Positives = 29/83 (34%), Gaps = 17/83 (20%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
EAG L G P PG G G +G E G G P P PG G +
Sbjct: 1289 EAGEPGLPGEGGP----PGPKGERGEKG----ESGPSGAAGPPGPKGP---PGDDGPKGS 1337
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
P + P G PG PG
Sbjct: 1338 ------PGPVGFPGDPGPPGEPG 1354
>gi|15890086 type IV collagen alpha 5 isoform 2 precursor [Homo
sapiens]
Length = 1691
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 390 EAGSEALRG-SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
E GS+ G P P+ P +G++G E G L G P S P + G+PG
Sbjct: 939 EKGSKGEPGLPGPPGPMDPNLLGSKG-------EKGEPGLPGIPGVSGPKGYQGLPGDPG 991
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGLRPGCI 478
Q +P P +G+PGLPG +PG I
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPG-QPGLI 1020
Score = 37.4 bits (85), Expect = 0.032
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G + ++G A +P PG G +G G + G L G+P PG PG Q
Sbjct: 632 GEKGIQGV-AGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ-- 688
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
P +P ++G PG+PG+
Sbjct: 689 ----PGLPGIPGSKGEPGIPGI 706
Score = 36.6 bits (83), Expect = 0.055
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 406 VPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPL 463
+PG G +G+RG G+ L G P H G+PG + P + P
Sbjct: 82 IPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG 141
Query: 464 TRGSPGLPGL-----RPGCISNSS 482
+G PG PG+ PG I SS
Sbjct: 142 LQGPPGPPGIPGMKGEPGSIIMSS 165
Score = 36.6 bits (83), Expect = 0.055
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEP------- 456
P +PG+ G G+ G+ G +G P P PG PGR P
Sbjct: 692 PGIPGSKGEPGIPGIGLP--GPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKG 749
Query: 457 -PTLALPLTRGSPGLPGLR 474
P ALP G PGLPG +
Sbjct: 750 EPGFALPGPPGPPGLPGFK 768
Score = 36.2 bits (82), Expect = 0.071
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRG-LWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
G + + G P P PG+ G G +G + + S L G P PG PG
Sbjct: 1036 GPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPG 1095
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ S +P LP T G+ G PGL PG
Sbjct: 1096 IKGSVGDPGLPGLPGTPGAKGQPGL-PG 1122
Score = 35.0 bits (79), Expect = 0.16
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 404 PLVPGAVGAEGVRGL-----WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
P +PG GA G +G+ + E G G P P PG+PG + + S +
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMS-- 164
Query: 459 LALPLTRGSPGLPG 472
+LP +G+PG PG
Sbjct: 165 -SLPGPKGNPGYPG 177
Score = 34.3 bits (77), Expect = 0.27
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
+ G + G++ P P +PGA GA G G +G P PG+ G +
Sbjct: 513 QKGEKGQAGATGPKGLPGIPGAPGAPGFPGS----------KGEPGDI--LTFPGMKGDK 560
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ S P LP T G GLPGL PG
Sbjct: 561 GELGSPGAPGLPGLPGTPGQDGLPGL-PG 588
Score = 34.3 bits (77), Expect = 0.27
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 390 EAGSEALRGSSAP-----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
E GS + G+ P P +PG GA G G + E+G G P GVP
Sbjct: 861 ERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGT-KGEMGMMGPPGPPGPLGIPGRSGVP 919
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPGL--RPGCISNSSSGSFSASSSQAVSPVSGL 500
G + + +P +GS G PGL PG + + GS + + G+
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGV 977
Score = 33.9 bits (76), Expect = 0.35
Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 383 SLRLWEQEAGSEALRGSSAPHPL-VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHP 441
+L LW Q A + A G S G G +G RG E G L G P P
Sbjct: 16 ALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERGFPGLE-GHPGLPGFPGPEGP---- 70
Query: 442 GVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
PG R Q+ + P RG PGLPG PG
Sbjct: 71 --PGPRGQKGDDGIPGPPGPKGIRGPPGLPGF-PG 102
Score = 32.7 bits (73), Expect = 0.79
Identities = 32/108 (29%), Positives = 37/108 (34%), Gaps = 28/108 (25%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G L G HP +PG G EG G Q+ G + G P PG+PG
Sbjct: 49 ERGFPGLEG----HPGLPGFPGPEGPPGPRGQK-GDDGIPGPPGPKGIRGPPGLPG---- 99
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLR--------PGCISNSSSGSFSAS 489
P T G PG+PG PGC F S
Sbjct: 100 -----------FPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGS 136
Score = 32.0 bits (71), Expect = 1.3
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G G P P PG G+ G+ G +G G P + + PG G
Sbjct: 844 EKGDPGPPGLDVPGP--PGERGSPGIPGA-PGPIGPPGSPGLPGKAGASGFPGTKGEMGM 900
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
P L +P G PGL G
Sbjct: 901 MGPPGPPGPLGIPGRSGVPGLKG 923
Score = 32.0 bits (71), Expect = 1.3
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 401 APHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLA 460
+P P + G G G +G G +G P P PG G + ++ + +P
Sbjct: 1242 SPGPALEGPKGNPGPQGP-PGRPGPTGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG 1300
Query: 461 LPLTRGSPGLPGL-----RPG 476
LP +G G PGL RPG
Sbjct: 1301 LPGLKGDQGPPGLQGNPGRPG 1321
Score = 30.8 bits (68), Expect = 3.0
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGRRDQ 449
G + L G P P +PG G +G +G Q G L+G +PG PG
Sbjct: 1267 GFQGLPGPEGP-PGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGM 1325
Query: 450 RRSEVEPPTLALPLTRGSPGLPGL-----RPGCISNSSSGSFSASSSQAV 494
+ P P +G G+PG PG I S Q++
Sbjct: 1326 KGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSI 1375
Score = 30.0 bits (66), Expect = 5.1
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 388 EQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKA---LRGSPAHSSPALHPGVP 444
E + G + L G P P PG G G G + E G + RG P PG+P
Sbjct: 254 EFQKGDQGLPGDRGP-PGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 445 GRRDQRRSEVEPPTLALPLTRGS---PGLPGL---RPG 476
G EP +G PG PGL RPG
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPG 350
Score = 29.6 bits (65), Expect = 6.7
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 399 SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
SS P +PG G G+ G G+ ++GS PG PG + Q P T
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGY----PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGT 1126
Query: 459 LALPLTR------GSPGLPGLRPG 476
P + G+PGLPG PG
Sbjct: 1127 PGPPGPKGISGPPGNPGLPG-EPG 1149
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/102 (27%), Positives = 34/102 (33%), Gaps = 21/102 (20%)
Query: 392 GSEALRGSSAP-----HPLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALH---- 440
G+ L G P HP PG G +G G G K G P +P
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 441 ----------PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPG 472
PG+PG + EP P +G PG PG
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG 1241
Score = 29.3 bits (64), Expect = 8.7
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALH--------- 440
+ G G P P +G +G GL G K RG P P
Sbjct: 335 DTGPPGPPGLVIPRPGTGITIGEKGNIGL-PGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 441 -----PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
PG PG R Q+ E PP +++P G PGL G +PG
Sbjct: 394 GPPGPPGFPGERGQKGDE-GPPGISIP---GPPGLDG-QPG 429
Score = 29.3 bits (64), Expect = 8.7
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGV-----PGR 446
G + RG P P PG G +G+ G G G P P PG+ PG
Sbjct: 772 GPKGDRGFPGP-PGPPGRTGLDGLPG----PKGDVGPNGQPGPMGPPGLPGIGVQGPPGP 826
Query: 447 RDQRRSEVEPPTLALPLTRGSPGLPGL 473
+P +P +G PG PGL
Sbjct: 827 PGIPGPIGQPGLHGIPGEKGDPGPPGL 853
>gi|4502955 type IV collagen alpha 5 isoform 1 precursor [Homo
sapiens]
Length = 1685
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 390 EAGSEALRG-SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
E GS+ G P P+ P +G++G E G L G P S P + G+PG
Sbjct: 939 EKGSKGEPGLPGPPGPMDPNLLGSKG-------EKGEPGLPGIPGVSGPKGYQGLPGDPG 991
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGLRPGCI 478
Q +P P +G+PGLPG +PG I
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPG-QPGLI 1020
Score = 37.4 bits (85), Expect = 0.032
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G + ++G A +P PG G +G G + G L G+P PG PG Q
Sbjct: 632 GEKGIQGV-AGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ-- 688
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
P +P ++G PG+PG+
Sbjct: 689 ----PGLPGIPGSKGEPGIPGI 706
Score = 36.6 bits (83), Expect = 0.055
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 406 VPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPL 463
+PG G +G+RG G+ L G P H G+PG + P + P
Sbjct: 82 IPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG 141
Query: 464 TRGSPGLPGL-----RPGCISNSS 482
+G PG PG+ PG I SS
Sbjct: 142 LQGPPGPPGIPGMKGEPGSIIMSS 165
Score = 36.6 bits (83), Expect = 0.055
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEP------- 456
P +PG+ G G+ G+ G +G P P PG PGR P
Sbjct: 692 PGIPGSKGEPGIPGIGLP--GPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKG 749
Query: 457 -PTLALPLTRGSPGLPGLR 474
P ALP G PGLPG +
Sbjct: 750 EPGFALPGPPGPPGLPGFK 768
Score = 36.2 bits (82), Expect = 0.071
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRG-LWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
G + + G P P PG+ G G +G + + S L G P PG PG
Sbjct: 1036 GPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPG 1095
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ S +P LP T G+ G PGL PG
Sbjct: 1096 IKGSVGDPGLPGLPGTPGAKGQPGL-PG 1122
Score = 35.0 bits (79), Expect = 0.16
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 404 PLVPGAVGAEGVRGL-----WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
P +PG GA G +G+ + E G G P P PG+PG + + S +
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMS-- 164
Query: 459 LALPLTRGSPGLPG 472
+LP +G+PG PG
Sbjct: 165 -SLPGPKGNPGYPG 177
Score = 34.3 bits (77), Expect = 0.27
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
+ G + G++ P P +PGA GA G G +G P PG+ G +
Sbjct: 513 QKGEKGQAGATGPKGLPGIPGAPGAPGFPGS----------KGEPGDI--LTFPGMKGDK 560
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ S P LP T G GLPGL PG
Sbjct: 561 GELGSPGAPGLPGLPGTPGQDGLPGL-PG 588
Score = 34.3 bits (77), Expect = 0.27
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 390 EAGSEALRGSSAP-----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
E GS + G+ P P +PG GA G G + E+G G P GVP
Sbjct: 861 ERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGT-KGEMGMMGPPGPPGPLGIPGRSGVP 919
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPGL--RPGCISNSSSGSFSASSSQAVSPVSGL 500
G + + +P +GS G PGL PG + + GS + + G+
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGV 977
Score = 33.9 bits (76), Expect = 0.35
Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 383 SLRLWEQEAGSEALRGSSAPHPL-VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHP 441
+L LW Q A + A G S G G +G RG E G L G P P
Sbjct: 16 ALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERGFPGLE-GHPGLPGFPGPEGP---- 70
Query: 442 GVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
PG R Q+ + P RG PGLPG PG
Sbjct: 71 --PGPRGQKGDDGIPGPPGPKGIRGPPGLPGF-PG 102
Score = 33.5 bits (75), Expect = 0.46
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 394 EALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
E +G+ P P PG G EG GL G K +G+P PG+ G +
Sbjct: 1248 EGPKGNPGPQGPPGRPGLPGPEGPPGL-PGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPG 1306
Query: 452 SEVEPPTLALPLTRGSPGLPGLRPG 476
+ P L +G PGLPG+ PG
Sbjct: 1307 LQGNPGRPGLNGMKGDPGLPGV-PG 1330
Score = 32.7 bits (73), Expect = 0.79
Identities = 32/108 (29%), Positives = 37/108 (34%), Gaps = 28/108 (25%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G L G HP +PG G EG G Q+ G + G P PG+PG
Sbjct: 49 ERGFPGLEG----HPGLPGFPGPEGPPGPRGQK-GDDGIPGPPGPKGIRGPPGLPG---- 99
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLR--------PGCISNSSSGSFSAS 489
P T G PG+PG PGC F S
Sbjct: 100 -----------FPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGS 136
Score = 32.0 bits (71), Expect = 1.3
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G G P P PG G+ G+ G +G G P + + PG G
Sbjct: 844 EKGDPGPPGLDVPGP--PGERGSPGIPGA-PGPIGPPGSPGLPGKAGASGFPGTKGEMGM 900
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
P L +P G PGL G
Sbjct: 901 MGPPGPPGPLGIPGRSGVPGLKG 923
Score = 31.6 bits (70), Expect = 1.8
Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGA--EGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGR- 446
E G G P P PG+ G EG +G G + G P P PG+PG
Sbjct: 1224 EPGFHGFPGVQGP-PGPPGSPGPALEGPKG----NPGPQGPPGRPGLPGPEGPPGLPGNG 1278
Query: 447 --RDQRRSEVEPPTLALPLTRGSPGLPGL-----RPG 476
+ ++ + +P LP +G G PGL RPG
Sbjct: 1279 GIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPG 1315
Score = 30.0 bits (66), Expect = 5.1
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 388 EQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKA---LRGSPAHSSPALHPGVP 444
E + G + L G P P PG G G G + E G + RG P PG+P
Sbjct: 254 EFQKGDQGLPGDRGP-PGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 445 GRRDQRRSEVEPPTLALPLTRGS---PGLPGL---RPG 476
G EP +G PG PGL RPG
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPG 350
Score = 30.0 bits (66), Expect = 5.1
Identities = 29/110 (26%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGRRDQ 449
G L G P P +PG G +G +G Q G L+G +PG PG
Sbjct: 1261 GRPGLPGPEGP-PGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGM 1319
Query: 450 RRSEVEPPTLALPLTRGSPGLPGL-----RPGCISNSSSGSFSASSSQAV 494
+ P P +G G+PG PG I S Q++
Sbjct: 1320 KGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSI 1369
Score = 29.6 bits (65), Expect = 6.7
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 399 SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
SS P +PG G G+ G G+ ++GS PG PG + Q P T
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGY----PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGT 1126
Query: 459 LALPLTR------GSPGLPGLRPG 476
P + G+PGLPG PG
Sbjct: 1127 PGPPGPKGISGPPGNPGLPG-EPG 1149
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/102 (27%), Positives = 34/102 (33%), Gaps = 21/102 (20%)
Query: 392 GSEALRGSSAP-----HPLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALH---- 440
G+ L G P HP PG G +G G G K G P +P
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 441 ----------PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPG 472
PG+PG + EP P +G PG PG
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG 1241
Score = 29.3 bits (64), Expect = 8.7
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALH--------- 440
+ G G P P +G +G GL G K RG P P
Sbjct: 335 DTGPPGPPGLVIPRPGTGITIGEKGNIGL-PGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 441 -----PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
PG PG R Q+ E PP +++P G PGL G +PG
Sbjct: 394 GPPGPPGFPGERGQKGDE-GPPGISIP---GPPGLDG-QPG 429
Score = 29.3 bits (64), Expect = 8.7
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGV-----PGR 446
G + RG P P PG G +G+ G G G P P PG+ PG
Sbjct: 772 GPKGDRGFPGP-PGPPGRTGLDGLPG----PKGDVGPNGQPGPMGPPGLPGIGVQGPPGP 826
Query: 447 RDQRRSEVEPPTLALPLTRGSPGLPGL 473
+P +P +G PG PGL
Sbjct: 827 PGIPGPIGQPGLHGIPGEKGDPGPPGL 853
>gi|15890088 type IV collagen alpha 5 isoform 3 precursor [Homo
sapiens]
Length = 1688
Score = 42.4 bits (98), Expect = 0.001
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 390 EAGSEALRG-SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
E GS+ G P P+ P +G++G E G L G P S P + G+PG
Sbjct: 939 EKGSKGEPGLPGPPGPMDPNLLGSKG-------EKGEPGLPGIPGVSGPKGYQGLPGDPG 991
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGLRPGCI 478
Q +P P +G+PGLPG +PG I
Sbjct: 992 QPGLSGQPGLPGPPGPKGNPGLPG-QPGLI 1020
Score = 37.4 bits (85), Expect = 0.032
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 7/82 (8%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G + ++G A +P PG G +G G + G L G+P PG PG Q
Sbjct: 632 GEKGIQGV-AGNPGQPGIPGPKGDPGQTITQPGKPGLPGNPGRDGDVGLPGDPGLPGQ-- 688
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
P +P ++G PG+PG+
Sbjct: 689 ----PGLPGIPGSKGEPGIPGI 706
Score = 36.6 bits (83), Expect = 0.055
Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 406 VPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPL 463
+PG G +G+RG G+ L G P H G+PG + P + P
Sbjct: 82 IPGPPGPKGIRGPPGLPGFPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPG 141
Query: 464 TRGSPGLPGL-----RPGCISNSS 482
+G PG PG+ PG I SS
Sbjct: 142 LQGPPGPPGIPGMKGEPGSIIMSS 165
Score = 36.6 bits (83), Expect = 0.055
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEP------- 456
P +PG+ G G+ G+ G +G P P PG PGR P
Sbjct: 692 PGIPGSKGEPGIPGIGLP--GPPGPKGFPGIPGPPGAPGTPGRIGLEGPPGPPGFPGPKG 749
Query: 457 -PTLALPLTRGSPGLPGLR 474
P ALP G PGLPG +
Sbjct: 750 EPGFALPGPPGPPGLPGFK 768
Score = 36.2 bits (82), Expect = 0.071
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 4/88 (4%)
Query: 392 GSEALRGSSAPH--PLVPGAVGAEGVRG-LWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
G + + G P P PG+ G G +G + + S L G P PG PG
Sbjct: 1036 GPQGVEGPPGPSGVPGQPGSPGLPGQKGDKGDPGISSIGLPGLPGPKGEPGLPGYPGNPG 1095
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ S +P LP T G+ G PGL PG
Sbjct: 1096 IKGSVGDPGLPGLPGTPGAKGQPGL-PG 1122
Score = 35.0 bits (79), Expect = 0.16
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 404 PLVPGAVGAEGVRGL-----WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
P +PG GA G +G+ + E G G P P PG+PG + + S +
Sbjct: 107 PGMPGHDGAPGPQGIPGCNGTKGERGFPGSPGFPGLQGPPGPPGIPGMKGEPGSIIMS-- 164
Query: 459 LALPLTRGSPGLPG 472
+LP +G+PG PG
Sbjct: 165 -SLPGPKGNPGYPG 177
Score = 34.3 bits (77), Expect = 0.27
Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
+ G + G++ P P +PGA GA G G +G P PG+ G +
Sbjct: 513 QKGEKGQAGATGPKGLPGIPGAPGAPGFPGS----------KGEPGDI--LTFPGMKGDK 560
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ S P LP T G GLPGL PG
Sbjct: 561 GELGSPGAPGLPGLPGTPGQDGLPGL-PG 588
Score = 34.3 bits (77), Expect = 0.27
Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 390 EAGSEALRGSSAP-----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
E GS + G+ P P +PG GA G G + E+G G P GVP
Sbjct: 861 ERGSPGIPGAPGPIGPPGSPGLPGKAGASGFPGT-KGEMGMMGPPGPPGPLGIPGRSGVP 919
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPGL--RPGCISNSSSGSFSASSSQAVSPVSGL 500
G + + +P +GS G PGL PG + + GS + + G+
Sbjct: 920 GLKGDDGLQGQPGLPGPTGEKGSKGEPGLPGPPGPMDPNLLGSKGEKGEPGLPGIPGV 977
Score = 33.9 bits (76), Expect = 0.35
Identities = 33/95 (34%), Positives = 38/95 (40%), Gaps = 9/95 (9%)
Query: 383 SLRLWEQEAGSEALRGSSAPHPL-VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHP 441
+L LW Q A + A G S G G +G RG E G L G P P
Sbjct: 16 ALSLWGQPAEAAACYGCSPGSKCDCSGIKGEKGERGFPGLE-GHPGLPGFPGPEGP---- 70
Query: 442 GVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
PG R Q+ + P RG PGLPG PG
Sbjct: 71 --PGPRGQKGDDGIPGPPGPKGIRGPPGLPGF-PG 102
Score = 32.7 bits (73), Expect = 0.79
Identities = 32/108 (29%), Positives = 37/108 (34%), Gaps = 28/108 (25%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G L G HP +PG G EG G Q+ G + G P PG+PG
Sbjct: 49 ERGFPGLEG----HPGLPGFPGPEGPPGPRGQK-GDDGIPGPPGPKGIRGPPGLPG---- 99
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLR--------PGCISNSSSGSFSAS 489
P T G PG+PG PGC F S
Sbjct: 100 -----------FPGTPGLPGMPGHDGAPGPQGIPGCNGTKGERGFPGS 136
Score = 32.7 bits (73), Expect = 0.79
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
Query: 401 APHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLA 460
+P P + G G G +G G +G P P PG G + ++ + +P
Sbjct: 1242 SPGPALEGPKGNPGPQG----PPGRPGFQGLPGPEGPPGLPGNGGIKGEKGNPGQPGLPG 1297
Query: 461 LPLTRGSPGLPGL-----RPG 476
LP +G G PGL RPG
Sbjct: 1298 LPGLKGDQGPPGLQGNPGRPG 1318
Score = 32.0 bits (71), Expect = 1.3
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G G P P PG G+ G+ G +G G P + + PG G
Sbjct: 844 EKGDPGPPGLDVPGP--PGERGSPGIPGA-PGPIGPPGSPGLPGKAGASGFPGTKGEMGM 900
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
P L +P G PGL G
Sbjct: 901 MGPPGPPGPLGIPGRSGVPGLKG 923
Score = 30.8 bits (68), Expect = 3.0
Identities = 29/110 (26%), Positives = 40/110 (36%), Gaps = 8/110 (7%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGRRDQ 449
G + L G P P +PG G +G +G Q G L+G +PG PG
Sbjct: 1264 GFQGLPGPEGP-PGLPGNGGIKGEKGNPGQPGLPGLPGLKGDQGPPGLQGNPGRPGLNGM 1322
Query: 450 RRSEVEPPTLALPLTRGSPGLPGL-----RPGCISNSSSGSFSASSSQAV 494
+ P P +G G+PG PG I S Q++
Sbjct: 1323 KGDPGLPGVPGFPGMKGPSGVPGSAGPEGEPGLIGPPGPPGLPGPSGQSI 1372
Score = 30.0 bits (66), Expect = 5.1
Identities = 31/98 (31%), Positives = 37/98 (37%), Gaps = 10/98 (10%)
Query: 388 EQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKA---LRGSPAHSSPALHPGVP 444
E + G + L G P P PG G G G + E G + RG P PG+P
Sbjct: 254 EFQKGDQGLPGDRGP-PGPPGIRGPPGPPGGEKGEKGEQGEPGKRGKPGKDGENGQPGIP 312
Query: 445 GRRDQRRSEVEPPTLALPLTRGS---PGLPGL---RPG 476
G EP +G PG PGL RPG
Sbjct: 313 GLPGDPGYPGEPGRDGEKGQKGDTGPPGPPGLVIPRPG 350
Score = 30.0 bits (66), Expect = 5.1
Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 7/88 (7%)
Query: 394 EALRGSSAPH-----PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
E +G+ P P G G EG GL G K +G+P PG+ G +
Sbjct: 1248 EGPKGNPGPQGPPGRPGFQGLPGPEGPPGL-PGNGGIKGEKGNPGQPGLPGLPGLKGDQG 1306
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ P L +G PGLPG+ PG
Sbjct: 1307 PPGLQGNPGRPGLNGMKGDPGLPGV-PG 1333
Score = 29.6 bits (65), Expect = 6.7
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 399 SSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
SS P +PG G G+ G G+ ++GS PG PG + Q P T
Sbjct: 1071 SSIGLPGLPGPKGEPGLPGY----PGNPGIKGSVGDPGLPGLPGTPGAKGQPGLPGFPGT 1126
Query: 459 LALPLTR------GSPGLPGLRPG 476
P + G+PGLPG PG
Sbjct: 1127 PGPPGPKGISGPPGNPGLPG-EPG 1149
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/102 (27%), Positives = 34/102 (33%), Gaps = 21/102 (20%)
Query: 392 GSEALRGSSAP-----HPLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALH---- 440
G+ L G P HP PG G +G G G K G P +P
Sbjct: 1140 GNPGLPGEPGPVGGGGHPGQPGPPGEKGKPGQDGIPGPAGQKGEPGQPGFGNPGPPGLPG 1199
Query: 441 ----------PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPG 472
PG+PG + EP P +G PG PG
Sbjct: 1200 LSGQKGDGGLPGIPGNPGLPGPKGEPGFHGFPGVQGPPGPPG 1241
Score = 29.3 bits (64), Expect = 8.7
Identities = 31/101 (30%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALH--------- 440
+ G G P P +G +G GL G K RG P P
Sbjct: 335 DTGPPGPPGLVIPRPGTGITIGEKGNIGL-PGLPGEKGERGFPGIQGPPGLPGPPGAAVM 393
Query: 441 -----PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
PG PG R Q+ E PP +++P G PGL G +PG
Sbjct: 394 GPPGPPGFPGERGQKGDE-GPPGISIP---GPPGLDG-QPG 429
Score = 29.3 bits (64), Expect = 8.7
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGV-----PGR 446
G + RG P P PG G +G+ G G G P P PG+ PG
Sbjct: 772 GPKGDRGFPGP-PGPPGRTGLDGLPG----PKGDVGPNGQPGPMGPPGLPGIGVQGPPGP 826
Query: 447 RDQRRSEVEPPTLALPLTRGSPGLPGL 473
+P +P +G PG PGL
Sbjct: 827 PGIPGPIGQPGLHGIPGEKGDPGPPGL 853
>gi|163914392 glioma tumor suppressor candidate region gene 1 [Homo
sapiens]
Length = 1560
Score = 41.2 bits (95), Expect = 0.002
Identities = 46/159 (28%), Positives = 66/159 (41%), Gaps = 14/159 (8%)
Query: 195 APGSPACGPGRRPAGTPMPAALTPAAHVPRAST-ARMHCCTKRGTRLLSRSHSAASAQ-P 252
APG P P RP P L PA H+P +ST + + ++ +RL + + S Q P
Sbjct: 854 APGPPQ--PPLRPQSQPPEGPLPPAPHLPPSSTSSAVASSSETSSRLPAPTPSDFQLQFP 911
Query: 253 NTWSRAEAHQLLPSLRPVPVPGPRPPQASGTFDVALLPQRLQCGPPLEELAELLPKRSLD 312
+ ++ P+L VP P PP TF + P P L + LL +
Sbjct: 912 PSQGPHKSPTPPPTLHLVPEPAAPPPPPPRTFQMVTTP-----FPALPQPKALLERFHQV 966
Query: 313 PKSTLLLSLSSGGSSADWIPIASERRG--LEPAAEALGS 349
P +L + + G +A P S G PAA L S
Sbjct: 967 PSGIILQNKAGGAPAA---PQTSTSLGPLTSPAASVLVS 1002
Score = 30.8 bits (68), Expect = 3.0
Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEV-- 454
+ S AP P +P A +G + +A G H P+ HP P R R +
Sbjct: 753 QASPAPAPQIPAAAPLKGPGPSSSPSLPHQAPLGDSPHL-PSPHPTRPPSRPPSRPQSVS 811
Query: 455 ----EPPTLALPLTRGSPGLPGL 473
EPP P + P LPG+
Sbjct: 812 RPPSEPPLHPCPPPQAPPTLPGI 834
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 40.8 bits (94), Expect = 0.003
Identities = 36/110 (32%), Positives = 43/110 (39%), Gaps = 16/110 (14%)
Query: 392 GSEALRGSSAP-----HPLVPGAVGAEGVRGLW-----EQEVGSKALRGSPAHSSPALHP 441
GS RG + P P PG G G +G + E G + G P S PA P
Sbjct: 795 GSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPP 854
Query: 442 GVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPGCISNSSSGSFSASSS 491
G G + +R S P P RG PG PG SN + G S S
Sbjct: 855 GPQGVKGERGSPGGPGAAGFPGARGLPGPPG------SNGNPGPPGPSGS 898
Score = 37.4 bits (85), Expect = 0.032
Identities = 32/89 (35%), Positives = 38/89 (42%), Gaps = 8/89 (8%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPA---HSSPALHPGVPGRRD 448
G+ L G+ P P GA GA G+RG E G +G P A PGVPG +
Sbjct: 405 GAPGLMGARGP-PGPAGANGAPGLRG-GAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKG 462
Query: 449 QRR---SEVEPPTLALPLTRGSPGLPGLR 474
+ S EP LP G G PG R
Sbjct: 463 EDGKDGSPGEPGANGLPGAAGERGAPGFR 491
Score = 35.8 bits (81), Expect = 0.093
Identities = 29/89 (32%), Positives = 35/89 (39%), Gaps = 9/89 (10%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE-----VGSKALRGSPAHSSPALHPGVPGR 446
G G S P P PGA+G G G + G + L G P PA PG PG
Sbjct: 204 GEPGQAGPSGP-PGPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGM 262
Query: 447 RDQRRSE---VEPPTLALPLTRGSPGLPG 472
+ R + E P +G GLPG
Sbjct: 263 KGHRGFDGRNGEKGETGAPGLKGENGLPG 291
Score = 35.8 bits (81), Expect = 0.093
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 4/93 (4%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG G G G G G+ H P PG G R +R SE P P G
Sbjct: 1133 PGPAGPRGPVG----PSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPG 1188
Query: 467 SPGLPGLRPGCISNSSSGSFSASSSQAVSPVSG 499
PG PG G + ++ + +P G
Sbjct: 1189 PPGAPGPCCGGVGAAAIAGIGGEKAGGFAPYYG 1221
Score = 35.0 bits (79), Expect = 0.16
Identities = 29/95 (30%), Positives = 35/95 (36%), Gaps = 5/95 (5%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G + G + L PGA G G G G G P PA G PG
Sbjct: 463 EDGKDGSPGEPGANGL-PGAAGERGAPGFR----GPAGPNGIPGEKGPAGERGAPGPAGP 517
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPGCISNSSSG 484
R + EP +P G G+PG G S+ G
Sbjct: 518 RGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPG 552
Score = 34.7 bits (78), Expect = 0.21
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGRRDQ 449
G E +G++ P P PGA G G++G+ + +GS +G GVPG+
Sbjct: 702 GPEGGKGAAGP-PGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGADGVPGKDGP 760
Query: 450 R--RSEVEPPTLA-LPLTRGSPGLPGLRPG 476
R + PP A P +G G PGL PG
Sbjct: 761 RGPTGPIGPPGPAGQPGDKGEGGAPGL-PG 789
Score = 34.7 bits (78), Expect = 0.21
Identities = 27/86 (31%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGLWEQ--EVGSKALRGSPAHSSPALHPGVPGRRD 448
AG RG + P P +PG G+ G +G+ + + G+ L G P PG+ G
Sbjct: 950 AGITGARGLAGP-PGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAG 1008
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGLR 474
+ + P + LP GSPG G R
Sbjct: 1009 EPGRDGNPGSDGLPGRDGSPGGKGDR 1034
Score = 34.3 bits (77), Expect = 0.27
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPL 463
P +PGA GA G G GS G P A PG PG + + P + P
Sbjct: 311 PGLPGAAGARGNDGAR----GSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPG 366
Query: 464 TRGSPGLPG 472
RG PG G
Sbjct: 367 QRGEPGPQG 375
Score = 32.7 bits (73), Expect = 0.79
Identities = 31/99 (31%), Positives = 39/99 (39%), Gaps = 11/99 (11%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G+ L+G + +PG GA G G G+ RG P A G G
Sbjct: 277 ETGAPGLKGENG----LPGENGAPGPMG----PRGAPGERGRPGLPGAA---GARGNDGA 325
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPGCISNSSSGSFSA 488
R S+ +P P T G PG PG + S GS A
Sbjct: 326 RGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGA 364
Score = 32.3 bits (72), Expect = 1.0
Identities = 27/83 (32%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E GS G+ HP PG VG G G E G G+P + PG G R
Sbjct: 1036 ENGSPGAPGAPG-HPGPPGPVGPAGKSGD-RGESGPAGPAGAPGPAGSRGAPGPQGPRGD 1093
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
+ E + RG PG PG
Sbjct: 1094 KGETGERGAAGIKGHRGFPGNPG 1116
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 5/71 (7%)
Query: 407 PGAVGAEGVRGLWEQE-----VGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLAL 461
PG GA+GV G +G G P PG+PG R S E
Sbjct: 746 PGGPGADGVPGKDGPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGP 805
Query: 462 PLTRGSPGLPG 472
P G PG PG
Sbjct: 806 PGPAGFPGAPG 816
Score = 31.6 bits (70), Expect = 1.8
Identities = 29/92 (31%), Positives = 33/92 (35%), Gaps = 15/92 (16%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGL-----WEQEVGSKALRGSPAHSSP------ALH 440
G + RGS P PGA G G RGL G GSP P
Sbjct: 858 GVKGERGS----PGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGA 913
Query: 441 PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPG 472
PG PG + +P P +G PG PG
Sbjct: 914 PGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPG 945
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/81 (30%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
GS+ L G G+ G +G RG E GS G+P H P G G+ R
Sbjct: 1017 GSDGLPGRD-------GSPGGKGDRG----ENGSPGAPGAPGHPGPPGPVGPAGKSGDRG 1065
Query: 452 SEVEPPTLALPLTRGSPGLPG 472
P GS G PG
Sbjct: 1066 ESGPAGPAGAPGPAGSRGAPG 1086
Score = 30.4 bits (67), Expect = 3.9
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTR 465
VPG G G+ G GS G P + PG PG R +P + P +
Sbjct: 529 VPGGPGMRGMPGS-PGGPGSDGKPGPPGSQGESGRPGPPGPSGPRG---QPGVMGFPGPK 584
Query: 466 GSPGLPG 472
G+ G PG
Sbjct: 585 GNDGAPG 591
Score = 30.0 bits (66), Expect = 5.1
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 21/105 (20%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGL--------WEQEVGSKALRGSPA---HSSPALH 440
GS +G P PG+ GA G RG + G + GSP PA
Sbjct: 345 GSPGAKGEVGPAGS-PGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGI 403
Query: 441 PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPGCISNSSSGS 485
PG PG R PP A G+ G PGLR G +G+
Sbjct: 404 PGAPGLMGAR----GPPGPA-----GANGAPGLRGGAGEPGKNGA 439
Score = 29.6 bits (65), Expect = 6.7
Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 390 EAGSEALRGSSAPHPLVP-GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
E G RG AP P P GA G G G+ G + + GSP PG PG +
Sbjct: 502 EKGPAGERG--APGPAGPRGAAGEPGRDGV-PGGPGMRGMPGSPGGPGSDGKPGPPGSQG 558
Query: 449 QRRSEVEPPTLALPLTRGSPGLPGLRPGCISNSSS 483
+ PP + P RG PG+ G PG N +
Sbjct: 559 E-SGRPGPPGPSGP--RGQPGVMGF-PGPKGNDGA 589
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 40.8 bits (94), Expect = 0.003
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGRR 447
+ G + G P P PG GA+G+ G GS G P P+ PG+PG
Sbjct: 631 DQGHPGVPGFMGP-PGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEE 689
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+ + +P P G PGLPG
Sbjct: 690 GKEGRDGKPGPPGEPGKAGEPGLPG 714
Score = 38.5 bits (88), Expect = 0.014
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 19/83 (22%)
Query: 398 GSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGRRDQRRS 452
G S P PG+VGA G+RG + E G+ GSP P PG PG
Sbjct: 410 GPSGP----PGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPG---- 461
Query: 453 EVEPPTLAL---PLTRGSPGLPG 472
PP P RGSPGLPG
Sbjct: 462 ---PPGKGKDGEPGLRGSPGLPG 481
Score = 36.2 bits (82), Expect = 0.071
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 23/107 (21%)
Query: 391 AGSEALRGSSA---PHPLVPGAVGAEGVRGL-----------WEQEVGSKALRGSP---- 432
AG L G+++ PHP +PG G +G +G E+G + G P
Sbjct: 327 AGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKG 386
Query: 433 ---AHSSP--ALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
AH +P A +PG PG P ++ P RG+PG G R
Sbjct: 387 QEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGER 433
Score = 36.2 bits (82), Expect = 0.071
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 392 GSEALRGS--SAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
G E G+ +A +P PG VGA G G VG+ LRG+P G G R +
Sbjct: 386 GQEGAHGAPGAAGNPGAPGHVGAPGPSGP-PGSVGAPGLRGTP---------GKDGERGE 435
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ + E + RG PG PGL PG
Sbjct: 436 KGAAGEEGSPGPVGPRGDPGAPGL-PG 461
Score = 34.3 bits (77), Expect = 0.27
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 392 GSEALRGSSAPH-----PLVPGAVGAEGVRGLWEQEVGSKALRGSPA---HSSPALHPGV 443
G+E +G + P P + G G++G RG + EVG K +G P P +PG
Sbjct: 591 GTEGKKGEAGPPGLPGPPGIAGPQGSQGERGA-DGEVGQKGDQGHPGVPGFMGPPGNPGP 649
Query: 444 PGRRDQRRSEVEPPTL-------ALPLTRGSPGLPGLRPG 476
PG D PP + P +G GLPG+ PG
Sbjct: 650 PG-ADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGI-PG 687
Score = 33.9 bits (76), Expect = 0.35
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPA---LHPGVPGRRDQRRSEVEPPTLALPLT 464
G G G+RG E+G + L G P A PG PG R ++ + E L LP
Sbjct: 259 GLPGKPGLRG----EIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGL 314
Query: 465 RGS------------PGLPG 472
+G PGLPG
Sbjct: 315 KGDRGEKGEAGPAGPPGLPG 334
Score = 32.7 bits (73), Expect = 0.79
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G + + G P PG G +G RG + G K +G P PG+PG +
Sbjct: 817 EPGEKGVPGKEGV-PGKPGEPGFKGERG----DPGIKGDKGPPGGKGQPGDPGIPGHKGH 871
Query: 450 ------RRSEVEPPTLALPLTRGSPGLPGLR 474
+ E + P G PG PGLR
Sbjct: 872 TGLMGPQGLPGENGPVGPPGPPGQPGFPGLR 902
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG+ G G G Q+ GSK GSP G+PG R EP +P G
Sbjct: 779 PGSPGEPGPSGTPGQK-GSKGENGSP---------GLPGFLGPRGPPGEPGEKGVPGKEG 828
Query: 467 SPGLPGLRPG 476
PG PG PG
Sbjct: 829 VPGKPG-EPG 837
Score = 29.6 bits (65), Expect = 6.7
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 12/80 (15%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQR 450
AG E G P PGA G G G + G LRGSP G+PG +
Sbjct: 439 AGEEGSPGPVGPRG-DPGAPGLPGPPGKGKD--GEPGLRGSP---------GLPGPLGTK 486
Query: 451 RSEVEPPTLALPLTRGSPGL 470
P P +RG PG+
Sbjct: 487 GDRGAPGIPGSPGSRGDPGI 506
Score = 29.6 bits (65), Expect = 6.7
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGS 467
G G +G RG G GSP P+ PG G + + S P L RG
Sbjct: 762 GPQGPQGPRG----PPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLG---PRGP 814
Query: 468 PGLPG 472
PG PG
Sbjct: 815 PGEPG 819
Score = 29.6 bits (65), Expect = 6.7
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 396 LRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG 445
LRG P P +PG G G + G + G + PA HPG+PG
Sbjct: 1001 LRGEMGP-PGIPGQPGEPGYA-----KDGLPGIPGPQGETGPAGHPGLPG 1044
Score = 29.3 bits (64), Expect = 8.7
Identities = 26/83 (31%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G E G P PG G G GL G + RG P G PG R
Sbjct: 688 EEGKEGRDGKPGP----PGEPGKAGEPGL----PGPEGARGPPGFKGHTGDSGAPGPRG- 738
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
E + LP G PG G
Sbjct: 739 -----ESGAMGLPGQEGLPGKDG 756
>gi|87196339 collagen, type VI, alpha 1 precursor [Homo sapiens]
Length = 1028
Score = 40.8 bits (94), Expect = 0.003
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 13/119 (10%)
Query: 390 EAGSEALRGSSAP-----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
EAG + +G P P G +G +G RG E GS+ RG+P + P PG+
Sbjct: 447 EAGPQGDQGREGPVGVPGDPGEAGPIGPKGYRGD-EGPPGSEGARGAPGPAGPPGDPGLM 505
Query: 445 GRRDQ-----RRSEVEPPTLALPLTRGSPGLPGLR--PGCISNSSSGSFSASSSQAVSP 496
G R + +E P P RG+PG+ G + PG + + ++P
Sbjct: 506 GERGEDGPAGNGTEGFPGFPGYPGNRGAPGINGTKGYPGLKGDEGEAGDPGDDNNDIAP 564
Score = 36.2 bits (82), Expect = 0.071
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPAL------HPGVPG 445
G + ++G P PGA G +G +G E G+ G P S P+ PG PG
Sbjct: 350 GFDGIQGPPGPKG-DPGAFGLKGEKG----EPGADGEAGRPGSSGPSGDEGQPGEPGPPG 404
Query: 446 RRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
+ + E P P RG PG G R
Sbjct: 405 EKGEAGDEGNPGPDGAPGERGGPGERGPR 433
>gi|100913220 alpha 1 type XVI collagen precursor [Homo sapiens]
Length = 1604
Score = 40.8 bits (94), Expect = 0.003
Identities = 34/107 (31%), Positives = 43/107 (40%), Gaps = 18/107 (16%)
Query: 388 EQEAGSEALRGSSA--PHPLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSP------ 437
+ E GSE +RG S P PG G +G GL + + G LRG P + P
Sbjct: 1182 QAEKGSEGIRGPSGLPGSPGPPGPPGIQGPAGLDGLDGKDGKPGLRGDPGPAGPPGLMGP 1241
Query: 438 ------ALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGL--PGLRPG 476
HPG+PG + P + P G PG P RPG
Sbjct: 1242 PGFKGKTGHPGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPG 1288
Score = 40.4 bits (93), Expect = 0.004
Identities = 30/90 (33%), Positives = 36/90 (40%), Gaps = 24/90 (26%)
Query: 390 EAGSEALRGSSAPH-----PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
E G +RGS P P PGAVG+ G+ GL + E G L G P PG P
Sbjct: 1034 EEGPPGMRGSPGPPGPIGPPGFPGAVGSPGLPGL-QGERGLTGLTGDKGEPGPPGQPGYP 1092
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
G G PGLPG++
Sbjct: 1093 G------------------ATGPPGLPGIK 1104
Score = 35.0 bits (79), Expect = 0.16
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQ--EVGSKALRGSPAHSSPALHPGVPGR--- 446
GSE L G PG G G RG E G + +G P P PG PG+
Sbjct: 1123 GSEGLPGP-------PGPAGPRGERGPQGNSGEKGDQGFQGQPGFPGPPGPPGFPGKVGS 1175
Query: 447 ------RDQRRSEVEPPTLALPLTRGSPGLPGLR 474
+ ++ SE LP + G PG PG++
Sbjct: 1176 PGPPGPQAEKGSEGIRGPSGLPGSPGPPGPPGIQ 1209
Score = 34.3 bits (77), Expect = 0.27
Identities = 25/71 (35%), Positives = 27/71 (38%), Gaps = 13/71 (18%)
Query: 402 PHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLAL 461
P P AVG +G RG G + L G P P HPG PG EP T
Sbjct: 1302 PGPAGISAVGLKGDRGA----TGERGLAGLPGQPGPPGHPGPPG---------EPGTDGA 1348
Query: 462 PLTRGSPGLPG 472
G PG G
Sbjct: 1349 AGKEGPPGKQG 1359
Score = 33.1 bits (74), Expect = 0.60
Identities = 30/101 (29%), Positives = 41/101 (40%), Gaps = 20/101 (19%)
Query: 390 EAGSEALRGSS--APHPLVPGAVGAEGVRGLWEQE-----VGSKALRGSPAHSSPALH-- 440
+AG L+G A +P PG G G GL + G K +G + P+L
Sbjct: 674 KAGERGLKGQKGDAGNPGDPGTPGTTGRPGLSGEPGVQGPAGPKGEKGDGCTACPSLQGT 733
Query: 441 -------PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
PG PG + E P + P G PGLPG++
Sbjct: 734 VTDMAGRPGQPGPK----GEQGPEGVGRPGKPGQPGLPGVQ 770
Score = 33.1 bits (74), Expect = 0.60
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 10/85 (11%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
GS ++G++ P + P G G Q+ G LRG+P P G PG
Sbjct: 824 GSPGVKGATGP--VGPPGASVSGPPGRDGQQ-GQTGLRGTPGEKGPRGEKGEPG------ 874
Query: 452 SEVEPPTLALPLTRGSPGLPGLRPG 476
E P+ + G PG PGL G
Sbjct: 875 -ECSCPSQGDLIFSGMPGAPGLWMG 898
Score = 32.3 bits (72), Expect = 1.0
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PGA G +G G E G + G P S G PG +R P G
Sbjct: 1370 PGAAGQKGQAG----EKGRAGMPGGPGKSGSMGPVGPPGPAGERGHP------GAPGPSG 1419
Query: 467 SPGLPGLRPGCISN 480
SPGLPG+ PG + +
Sbjct: 1420 SPGLPGV-PGSMGD 1432
Score = 30.8 bits (68), Expect = 3.0
Identities = 30/89 (33%), Positives = 36/89 (40%), Gaps = 9/89 (10%)
Query: 392 GSEALRGSSAPHPLVPG--AVGAEGVRGLWEQEVGSKALRGS---PAHSSPALHPGVPGR 446
G E L G P P +PG +G G G G K +GS P P PG PG
Sbjct: 441 GPEGLAGEPGP-PGLPGPPGIGLPGTPGDPGGPPGPKGDKGSSGIPGKEGPGGKPGKPGV 499
Query: 447 RDQRRSEVEP-PTLALPLTR--GSPGLPG 472
+ ++ E PTL G PG PG
Sbjct: 500 KGEKGDPCEVCPTLPEGFQNFVGLPGKPG 528
Score = 30.8 bits (68), Expect = 3.0
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 12/63 (19%)
Query: 411 GAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGL 470
G G GLW +G P P PGVPG + +P G PG
Sbjct: 888 GMPGAPGLWMGSSWQPGPQGPPGIPGPPGPPGVPGLQ------------GVPGNNGLPGQ 935
Query: 471 PGL 473
PGL
Sbjct: 936 PGL 938
Score = 30.8 bits (68), Expect = 3.0
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 404 PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP--------GRRDQRRSEVE 455
P PG+ G G G +G + G P H P PG P G + R + E
Sbjct: 1263 PGPPGSTGRPGAEGE-PGAMGPQGRPGPPGHVGPPGPPGQPGPAGISAVGLKGDRGATGE 1321
Query: 456 PPTLALPLTRGSPGLPG 472
LP G PG PG
Sbjct: 1322 RGLAGLPGQPGPPGHPG 1338
Score = 29.3 bits (64), Expect = 8.7
Identities = 29/114 (25%), Positives = 42/114 (36%), Gaps = 9/114 (7%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQE-----VGSKALRGSPAHSSPALHPGVPGR 446
G G++ P P +PG G G G ++ GS+ L G P + P G G
Sbjct: 1087 GQPGYPGATGP-PGLPGIKGERGYTGSAGEKGEPGPPGSEGLPGPPGPAGPRGERGPQGN 1145
Query: 447 RDQRRSEVEPPTLALPLTRGSPGLPGLRPGCISNSSSGSFSASSSQAVSPVSGL 500
++ + P G PG PG S G + S+ + SGL
Sbjct: 1146 SGEKGDQGFQGQPGFP---GPPGPPGFPGKVGSPGPPGPQAEKGSEGIRGPSGL 1196
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 40.8 bits (94), Expect = 0.003
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVPGRR 447
+ G + G P P PG GA+G+ G GS G P P+ PG+PG
Sbjct: 1184 DQGHPGVPGFMGP-PGNPGPPGADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGIPGEE 1242
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+ + +P P G PGLPG
Sbjct: 1243 GKEGRDGKPGPPGEPGKAGEPGLPG 1267
Score = 38.5 bits (88), Expect = 0.014
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 19/83 (22%)
Query: 398 GSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGVPGRRDQRRS 452
G S P PG+VGA G+RG + E G+ GSP P PG PG
Sbjct: 928 GPSGP----PGSVGAPGLRGTPGKDGERGEKGAAGEEGSPGPVGPRGDPGAPGLPG---- 979
Query: 453 EVEPPTLAL---PLTRGSPGLPG 472
PP P RGSPGLPG
Sbjct: 980 ---PPGKGKDGEPGLRGSPGLPG 999
Score = 36.6 bits (83), Expect = 0.055
Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 389 QEAGSEALRGSSAP--HPLVPGAVGAEGVRGLWEQE--VGSKALRGSPAHSSPALHPGVP 444
Q+ G + +G+ P H PG GA G G ++ G + LRG P PG+P
Sbjct: 651 QQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGKKGDMGP---PGIP 707
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPG 472
G + P P GSPGLPG
Sbjct: 708 GLLGLQGPPGPPGVPGPPGPGGSPGLPG 735
Score = 36.2 bits (82), Expect = 0.071
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 23/107 (21%)
Query: 391 AGSEALRGSSA---PHPLVPGAVGAEGVRGL-----------WEQEVGSKALRGSP---- 432
AG L G+++ PHP +PG G +G +G E+G + G P
Sbjct: 845 AGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKG 904
Query: 433 ---AHSSP--ALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
AH +P A +PG PG P ++ P RG+PG G R
Sbjct: 905 QEGAHGAPGAAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGER 951
Score = 36.2 bits (82), Expect = 0.071
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 13/87 (14%)
Query: 392 GSEALRGS--SAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
G E G+ +A +P PG VGA G G VG+ LRG+P G G R +
Sbjct: 904 GQEGAHGAPGAAGNPGAPGHVGAPGPSGP-PGSVGAPGLRGTP---------GKDGERGE 953
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
+ + E + RG PG PGL PG
Sbjct: 954 KGAAGEEGSPGPVGPRGDPGAPGL-PG 979
Score = 34.3 bits (77), Expect = 0.27
Identities = 32/100 (32%), Positives = 44/100 (44%), Gaps = 18/100 (18%)
Query: 392 GSEALRGSSAPH-----PLVPGAVGAEGVRGLWEQEVGSKALRGSPA---HSSPALHPGV 443
G+E +G + P P + G G++G RG + EVG K +G P P +PG
Sbjct: 1144 GTEGKKGEAGPPGLPGPPGIAGPQGSQGERGA-DGEVGQKGDQGHPGVPGFMGPPGNPGP 1202
Query: 444 PGRRDQRRSEVEPPTL-------ALPLTRGSPGLPGLRPG 476
PG D PP + P +G GLPG+ PG
Sbjct: 1203 PG-ADGIAGAAGPPGIQGSPGKEGPPGPQGPSGLPGI-PG 1240
Score = 33.9 bits (76), Expect = 0.35
Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G L+G P P VPG G G GL E+G G P + P PG+
Sbjct: 708 GLLGLQGPPGP-PGVPGPPGPGGSPGL-PGEIGFPGKPGPPGPTGP------PGKDGPNG 759
Query: 452 SEVEPPTLALPLTRGSPGLPGLRPG 476
P T P RG GLPG +PG
Sbjct: 760 PPGPPGTKGEPGERGEDGLPG-KPG 783
Score = 33.9 bits (76), Expect = 0.35
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPA---LHPGVPGRRDQRRSEVEPPTLALPLT 464
G G G+RG E+G + L G P A PG PG R ++ + E L LP
Sbjct: 777 GLPGKPGLRG----EIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKGDQGEKGELGLPGL 832
Query: 465 RGS------------PGLPG 472
+G PGLPG
Sbjct: 833 KGDRGEKGEAGPAGPPGLPG 852
Score = 33.5 bits (75), Expect = 0.46
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQ--EVGSKALRGSPAHSSPALHPGVPGRRDQ 449
G + +G P G G +G GL GSK +RG P PG+PG
Sbjct: 511 GPKGEKGDVGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRGEPGELG---EPGLPGEVGM 567
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLR 474
R + P P G+PGL G R
Sbjct: 568 RGPQGPPGLPGPPGRVGAPGLQGER 592
Score = 32.7 bits (73), Expect = 0.79
Identities = 27/91 (29%), Positives = 36/91 (39%), Gaps = 11/91 (12%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G + + G P PG G +G RG + G K +G P PG+PG +
Sbjct: 1370 EPGEKGVPGKEGV-PGKPGEPGFKGERG----DPGIKGDKGPPGGKGQPGDPGIPGHKGH 1424
Query: 450 ------RRSEVEPPTLALPLTRGSPGLPGLR 474
+ E + P G PG PGLR
Sbjct: 1425 TGLMGPQGLPGENGPVGPPGPPGQPGFPGLR 1455
Score = 32.0 bits (71), Expect = 1.3
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG+ G G G Q+ GSK GSP G+PG R EP +P G
Sbjct: 1332 PGSPGEPGPSGTPGQK-GSKGENGSP---------GLPGFLGPRGPPGEPGEKGVPGKEG 1381
Query: 467 SPGLPGLRPG 476
PG PG PG
Sbjct: 1382 VPGKPG-EPG 1390
Score = 31.6 bits (70), Expect = 1.8
Identities = 23/67 (34%), Positives = 25/67 (37%), Gaps = 19/67 (28%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG G G +G GS+ L G P PA G PG P RG
Sbjct: 1050 PGPSGPPGDKG----SPGSRGLPGFPGPQGPAGRDGAPGN---------------PGERG 1090
Query: 467 SPGLPGL 473
PG PGL
Sbjct: 1091 PPGKPGL 1097
Score = 31.2 bits (69), Expect = 2.3
Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 6/72 (8%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGS 467
G G GV G Q+ G K +G+P PG PG R E L RG
Sbjct: 638 GPAGPPGVPGSVVQQEGLKGEQGAPGPRGHQGAPGPPGARGPIGPEGRDGPPGLQGLRGK 697
Query: 468 ------PGLPGL 473
PG+PGL
Sbjct: 698 KGDMGPPGIPGL 709
Score = 29.6 bits (65), Expect = 6.7
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG G +G G+ G K +GS PG PGR + EP L G
Sbjct: 510 PGPKGEKGDVGIGPFGQGEKGEKGSLG------LPGPPGRDGSKGMRGEPGEL------G 557
Query: 467 SPGLPG 472
PGLPG
Sbjct: 558 EPGLPG 563
Score = 29.6 bits (65), Expect = 6.7
Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGS 467
G G +G RG G GSP P+ PG G + + S P L RG
Sbjct: 1315 GPQGPQGPRG----PPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLG---PRGP 1367
Query: 468 PGLPG 472
PG PG
Sbjct: 1368 PGEPG 1372
Score = 29.6 bits (65), Expect = 6.7
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 396 LRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPG 445
LRG P P +PG G G + G + G + PA HPG+PG
Sbjct: 1554 LRGEMGP-PGIPGQPGEPGYA-----KDGLPGIPGPQGETGPAGHPGLPG 1597
Score = 29.3 bits (64), Expect = 8.7
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G RG P G G +G+RG + ++G + G P PGVPG
Sbjct: 672 GPPGARGPIGPEGR-DGPPGLQGLRGK-KGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGG 729
Query: 452 SEVEPPTLALPLTRGSPGLPG 472
S P + P G PG PG
Sbjct: 730 SPGLPGEIGFP---GKPGPPG 747
Score = 29.3 bits (64), Expect = 8.7
Identities = 26/83 (31%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G E G P PG G G GL G + RG P G PG R
Sbjct: 1241 EEGKEGRDGKPGP----PGEPGKAGEPGL----PGPEGARGPPGFKGHTGDSGAPGPRG- 1291
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
E + LP G PG G
Sbjct: 1292 -----ESGAMGLPGQEGLPGKDG 1309
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 40.4 bits (93), Expect = 0.004
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Query: 389 QEAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGR 446
Q G RG P P VPG+ G +G G + G +G P + P G PG
Sbjct: 24 QIRGPPGERGPPGPPGPPGVPGSDGIDGDNGP-PGKAGPPGPKGEPGKAGPDGPDGKPGI 82
Query: 447 RDQRRSEVEPPTLALPLTRGSPGLPG 472
++ EP + +P +G PGLPG
Sbjct: 83 DGLTGAKGEPGPMGIPGVKGQPGLPG 108
Score = 37.4 bits (85), Expect = 0.032
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEP 456
+G++ P P + G G G G+ + G GSP H A PG PG + + EP
Sbjct: 297 KGATGP-PGINGKDGTPGTPGM-KGSAGQAGQPGSPGHQGLAGVPGQPGTKGGPGDQGEP 354
Query: 457 PTLALPLTRGSPGLPGLRPG 476
LP G PG G PG
Sbjct: 355 GPQGLPGFSGPPGKEG-EPG 373
Score = 36.2 bits (82), Expect = 0.071
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G + +G P P +PG G GV+G + GS G G+PG + ++
Sbjct: 403 GRQGPKGEQGP-PGIPGPQGLPGVKG----DKGSPGKTGPRGKVGDPGVAGLPGEKGEKG 457
Query: 452 SEVEPPTLALPLTRGSPGLPG 472
EP RG PG PG
Sbjct: 458 ESGEPGPKGQQGVRGEPGYPG 478
Score = 34.7 bits (78), Expect = 0.21
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 14/86 (16%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKAL---RGSPAHSSPALHPGVPGR 446
E G + L G S P PG G G RG E+G + + +G P PG GR
Sbjct: 353 EPGPQGLPGFSGP----PGKEGEPGPRG----EIGPQGIMGQKGDQGERGPVGQPGPQGR 404
Query: 447 RDQRRSEVEPPTLALPLTRGSPGLPG 472
+ + E PP +P +G PG+ G
Sbjct: 405 QGPK-GEQGPP--GIPGPQGLPGVKG 427
Score = 34.3 bits (77), Expect = 0.27
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 14/116 (12%)
Query: 367 DGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSK 426
DGL + P+ ++ G L G P PG G G+ G E+G +
Sbjct: 83 DGLTGAKGEPGPMGIPGVKGQPGLPGPPGLPGPGFAGP--PGPPGPVGLPG----EIGIR 136
Query: 427 ALRGSPAHSSPALHPGVPGRRD--------QRRSEVEPPTLALPLTRGSPGLPGLR 474
+G P P+ PG PG+ + ++ PT P +G PGL G++
Sbjct: 137 GPKGDPGPDGPSGPPGPPGKPGRPGTIQGLEGSADFLCPTNCPPGMKGPPGLQGVK 192
Score = 33.5 bits (75), Expect = 0.46
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 13/119 (10%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRG-------LWEQEVGSKALRGSPAHSSPALHPGVP 444
G + G P VPG VGA G G E+ + RG P P PG+P
Sbjct: 568 GKQGPHGHPGPRG-VPGIVGAVGQIGNTGPKGKRGEKGDPGEVGRGHPGMPGPPGIPGLP 626
Query: 445 GRRDQ--RRSEVEPPTLALPLTRGSPGLP---GLRPGCISNSSSGSFSASSSQAVSPVS 498
GR Q + + + P G PGLP GL C + G+ + +S++ P S
Sbjct: 627 GRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVGLPGFCEPAACLGASAYASARLTEPGS 685
Score = 30.8 bits (68), Expect = 3.0
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 10/88 (11%)
Query: 392 GSEALRGSSAPHPLV--PGAVGAEGVRGLWEQE-----VGSKALRGSPAHSSPALHPGVP 444
G + G + P V PG G G +G + G + +RG P + P+ G P
Sbjct: 427 GDKGSPGKTGPRGKVGDPGVAGLPGEKGEKGESGEPGPKGQQGVRGEPGYPGPSGDAGAP 486
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPG 472
G + P L RG PG PG
Sbjct: 487 GVQGY---PGPPGPRGLAGNRGVPGQPG 511
Score = 30.0 bits (66), Expect = 5.1
Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGS 467
G G+ G+RG + G K G P + PG PG + +P + G
Sbjct: 280 GDEGSPGIRGP-QGITGPKGATGPPGINGKDGTPGTPGMKGSAGQAGQPGSPGHQGLAGV 338
Query: 468 PGLPGLRPG 476
PG PG + G
Sbjct: 339 PGQPGTKGG 347
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 40.0 bits (92), Expect = 0.005
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG GA G +G E G RG P PG PG + P T +P +G
Sbjct: 365 PGFPGAPGAKG----EAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG 420
Query: 467 SPGLPGL 473
S G PG+
Sbjct: 421 SAGAPGI 427
Score = 31.2 bits (69), Expect = 2.3
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 401 APHPLVP-GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEP--- 456
A PL P G G G+ G G + +G P + P PG G +R + EP
Sbjct: 445 ATGPLGPKGQTGEPGIAGF----KGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 500
Query: 457 PTLALPLTRGSPGLPGLRPGCISNSSSGSFSASSSQAVSPVSG 499
+ P RG+PG G PG + +G A + S ++G
Sbjct: 501 GPIGPPGERGAPGNRGF-PG--QDGLAGPKGAPGERGPSGLAG 540
Score = 31.2 bits (69), Expect = 2.3
Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 390 EAGSEALRG-SSAP----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
+AG + G S AP P PG GA G G+ G K G P + PG P
Sbjct: 568 DAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFP-GPKGANGEPGKAGEKGLPGAP 626
Query: 445 GRR-----DQRRSEVEPPTLALPL-TRGSPGLPG 472
G R D PP A P RG G PG
Sbjct: 627 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG 660
Score = 30.8 bits (68), Expect = 3.0
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 22/84 (26%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G RGS PGA G +G RGL G+ G S PA PG G
Sbjct: 700 ERGFPGERGS-------PGAQGLQGPRGL----PGTPGTDGPKGASGPAGPPGAQG---- 744
Query: 450 RRSEVEPPTL-ALPLTRGSPGLPG 472
PP L +P RG+ G+ G
Sbjct: 745 ------PPGLQGMPGERGAAGIAG 762
Score = 30.4 bits (67), Expect = 3.9
Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 17/76 (22%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGR-----------RDQRRSEVEP 456
G GA GV+G E GS GSP P PG GR D + P
Sbjct: 300 GEAGAPGVKG----ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 355
Query: 457 PTLALPLTRGSPGLPG 472
P P G PG PG
Sbjct: 356 PGPVGP--AGGPGFPG 369
Score = 30.4 bits (67), Expect = 3.9
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G + G+ P P G G G+ GL G + RG P P+ PG G
Sbjct: 958 EPGDDGPSGAEGP-PGPQGLAGQRGIVGL----PGQRGERGFPGLPGPSGEPGKQGAPGA 1012
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
P + P G G PG
Sbjct: 1013 SGDRGPPGPVGPPGLTGPAGEPG 1035
Score = 30.0 bits (66), Expect = 5.1
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
E G L G + P PG G G RGL + G +G S G PG
Sbjct: 532 ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP-GDAGPQGKVGPSGAPGEDGRPGPP 590
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+ + +P + P +G+ G PG
Sbjct: 591 GPQGARGQPGVMGFPGPKGANGEPG 615
Score = 29.6 bits (65), Expect = 6.7
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 19/84 (22%)
Query: 390 EAGSEALRGSSAPHPLVP-GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
EAG + G AP P P GA G +G G+ G K RG+ PG GR
Sbjct: 853 EAGQKGDAG--APGPQGPSGAPGPQGPTGV----TGPKGARGAQGPPGATGFPGAAGR-- 904
Query: 449 QRRSEVEPPTLALPLTRGSPGLPG 472
V PP + G+PG PG
Sbjct: 905 -----VGPPG-----SNGNPGPPG 918
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 23/98 (23%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSP--ALHP-------- 441
G + RG S P PG G G++G G +G P P A P
Sbjct: 927 GPKGARGDSGP----PGRAGEPGLQG----PAGPPGEKGEPGDDGPSGAEGPPGPQGLAG 978
Query: 442 -----GVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
G+PG+R +R P P +G+PG G R
Sbjct: 979 QRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDR 1016
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 40.0 bits (92), Expect = 0.005
Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 407 PGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRG 466
PG GA G +G E G RG P PG PG + P T +P +G
Sbjct: 296 PGFPGAPGAKG----EAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKG 351
Query: 467 SPGLPGL 473
S G PG+
Sbjct: 352 SAGAPGI 358
Score = 31.2 bits (69), Expect = 2.3
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 401 APHPLVP-GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEP--- 456
A PL P G G G+ G G + +G P + P PG G +R + EP
Sbjct: 376 ATGPLGPKGQTGEPGIAGF----KGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGV 431
Query: 457 PTLALPLTRGSPGLPGLRPGCISNSSSGSFSASSSQAVSPVSG 499
+ P RG+PG G PG + +G A + S ++G
Sbjct: 432 GPIGPPGERGAPGNRGF-PG--QDGLAGPKGAPGERGPSGLAG 471
Score = 31.2 bits (69), Expect = 2.3
Identities = 32/94 (34%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 390 EAGSEALRG-SSAP----HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
+AG + G S AP P PG GA G G+ G K G P + PG P
Sbjct: 499 DAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFP-GPKGANGEPGKAGEKGLPGAP 557
Query: 445 GRR-----DQRRSEVEPPTLALPL-TRGSPGLPG 472
G R D PP A P RG G PG
Sbjct: 558 GLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPG 591
Score = 30.8 bits (68), Expect = 3.0
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 22/84 (26%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G RGS PGA G +G RGL G+ G S PA PG G
Sbjct: 631 ERGFPGERGS-------PGAQGLQGPRGL----PGTPGTDGPKGASGPAGPPGAQG---- 675
Query: 450 RRSEVEPPTL-ALPLTRGSPGLPG 472
PP L +P RG+ G+ G
Sbjct: 676 ------PPGLQGMPGERGAAGIAG 693
Score = 30.4 bits (67), Expect = 3.9
Identities = 26/76 (34%), Positives = 28/76 (36%), Gaps = 17/76 (22%)
Query: 408 GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGR-----------RDQRRSEVEP 456
G GA GV+G E GS GSP P PG GR D + P
Sbjct: 231 GEAGAPGVKG----ESGSPGENGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGP 286
Query: 457 PTLALPLTRGSPGLPG 472
P P G PG PG
Sbjct: 287 PGPVGP--AGGPGFPG 300
Score = 30.4 bits (67), Expect = 3.9
Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
E G + G+ P P G G G+ GL G + RG P P+ PG G
Sbjct: 889 EPGDDGPSGAEGP-PGPQGLAGQRGIVGL----PGQRGERGFPGLPGPSGEPGKQGAPGA 943
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
P + P G G PG
Sbjct: 944 SGDRGPPGPVGPPGLTGPAGEPG 966
Score = 30.0 bits (66), Expect = 5.1
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
E G L G + P PG G G RGL + G +G S G PG
Sbjct: 463 ERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRP-GDAGPQGKVGPSGAPGEDGRPGPP 521
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+ + +P + P +G+ G PG
Sbjct: 522 GPQGARGQPGVMGFPGPKGANGEPG 546
Score = 29.6 bits (65), Expect = 6.7
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 19/84 (22%)
Query: 390 EAGSEALRGSSAPHPLVP-GAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRD 448
EAG + G AP P P GA G +G G+ G K RG+ PG GR
Sbjct: 784 EAGQKGDAG--APGPQGPSGAPGPQGPTGV----TGPKGARGAQGPPGATGFPGAAGR-- 835
Query: 449 QRRSEVEPPTLALPLTRGSPGLPG 472
V PP + G+PG PG
Sbjct: 836 -----VGPPG-----SNGNPGPPG 849
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/98 (28%), Positives = 37/98 (37%), Gaps = 23/98 (23%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSP--ALHP-------- 441
G + RG S P PG G G++G G +G P P A P
Sbjct: 858 GPKGARGDSGP----PGRAGEPGLQG----PAGPPGEKGEPGDDGPSGAEGPPGPQGLAG 909
Query: 442 -----GVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
G+PG+R +R P P +G+PG G R
Sbjct: 910 QRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDR 947
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 39.7 bits (91), Expect = 0.006
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 392 GSEALRGSSAP--HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
G E LRG P +PGA G +G G G L+G P HPG+ G
Sbjct: 1417 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP-GLPGLKGDPGSKGEKGHPGLIGLIGP 1475
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
+ E LP T+GSPG G
Sbjct: 1476 PGEQGEKGDRGLPGTQGSPGAKG 1498
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
+ G +G + P P G VG +G G E G RG P P G+PG +
Sbjct: 962 QRGETGFQGKTGP-PGPGGVVGPQGPTG----ETGPIGERGHPGPPGPPGEQGLPGAAGK 1016
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
++ +P + G GL G PG
Sbjct: 1017 EGAKGDPGPQGISGKDGPAGLRGF-PG 1042
Score = 31.6 bits (70), Expect = 1.8
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 406 VPGAVGAEGVRG-LWEQEVGSK----ALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLA 460
+PGA G EG +G Q + K LRG P G PG + + P +
Sbjct: 1010 LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 1069
Query: 461 LPLTRGSP------GLPGLRPG 476
P RGS GLPG RPG
Sbjct: 1070 SPGERGSAGTAGPIGLPG-RPG 1090
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 401 APHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLA 460
A +P PG G G +G E G K G P + P PG G + P +
Sbjct: 1272 AGNPGPPGEAGVGGPKG----ERGEKGEAGPPGAAGP---PGAKGPPGDDGPKGNPGPVG 1324
Query: 461 LPLTRGSPGLPG 472
P G PG PG
Sbjct: 1325 FPGDPGPPGEPG 1336
Score = 30.4 bits (67), Expect = 3.9
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
E G +G+ P P G +G G +G G L G P P HPG G+
Sbjct: 698 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKG----PQGKPGLAGLPGADGPPGHPGKEGQS 753
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPGLR 474
++ + L P +G G PG R
Sbjct: 754 GEKGA------LGPPGPQGPIGYPGPR 774
Score = 30.0 bits (66), Expect = 5.1
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALP--- 462
+PG GA+G RG ++ G +G P PG PG R + E LP
Sbjct: 602 MPGEPGAKGDRG-FDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEA 660
Query: 463 ------LTRGSPGLPGLRPG 476
RG+PG PG +PG
Sbjct: 661 GPRGLLGPRGTPGAPG-QPG 679
Score = 30.0 bits (66), Expect = 5.1
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGV--- 443
G + +GS+ P PGA G +G RG+ + + G RGS P PG
Sbjct: 859 GRQGPKGSTG-FPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGT 917
Query: 444 ------PGRRDQRRSEVEPPTLALPLTRGSPGLPG 472
PG +R + + P +G PG PG
Sbjct: 918 SGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPG 952
Score = 30.0 bits (66), Expect = 5.1
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPA---HSSPALHPGVPGRR 447
AG E +G P + G G G+RG + E G +G+P P PG G
Sbjct: 1014 AGKEGAKGDPGPQG-ISGKDGPAGLRG-FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1071
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+R S + LP G G PG
Sbjct: 1072 GERGSAGTAGPIGLPGRPGPQGPPG 1096
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 20/108 (18%)
Query: 388 EQEAGSEALRGSSAP-----HPLVPGAVGAEGVRGL--------------WEQEVGSKAL 428
E ++G + G P +P G GA+GVRGL ++ ++G K
Sbjct: 750 EGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGD 809
Query: 429 RGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
RG P G G + + +P +G G+PGL PG
Sbjct: 810 RGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGL-PG 856
Score = 29.3 bits (64), Expect = 8.7
Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 23/100 (23%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSP---------AHSSPALH 440
EAG G P PGA GAEG +G E G+K G+ PA
Sbjct: 1364 EAGPPGPPGKRGP----PGAAGAEGRQG----EKGAKGEAGAEGPPGKTGPVGPQGPAGK 1415
Query: 441 P------GVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
P G+PG ++ P G PGLPGL+
Sbjct: 1416 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK 1455
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 39.7 bits (91), Expect = 0.006
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 392 GSEALRGSSAP--HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
G E LRG P +PGA G +G G G L+G P HPG+ G
Sbjct: 1366 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP-GLPGLKGDPGSKGEKGHPGLIGLIGP 1424
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
+ E LP T+GSPG G
Sbjct: 1425 PGEQGEKGDRGLPGTQGSPGAKG 1447
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
+ G +G + P P G VG +G G E G RG P P G+PG +
Sbjct: 911 QRGETGFQGKTGP-PGPGGVVGPQGPTG----ETGPIGERGHPGPPGPPGEQGLPGAAGK 965
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
++ +P + G GL G PG
Sbjct: 966 EGAKGDPGPQGISGKDGPAGLRGF-PG 991
Score = 31.6 bits (70), Expect = 1.8
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 406 VPGAVGAEGVRG-LWEQEVGSK----ALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLA 460
+PGA G EG +G Q + K LRG P G PG + + P +
Sbjct: 959 LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 1018
Query: 461 LPLTRGSP------GLPGLRPG 476
P RGS GLPG RPG
Sbjct: 1019 SPGERGSAGTAGPIGLPG-RPG 1039
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 401 APHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLA 460
A +P PG G G +G E G K G P + P PG G + P +
Sbjct: 1221 AGNPGPPGEAGVGGPKG----ERGEKGEAGPPGAAGP---PGAKGPPGDDGPKGNPGPVG 1273
Query: 461 LPLTRGSPGLPG 472
P G PG PG
Sbjct: 1274 FPGDPGPPGEPG 1285
Score = 30.4 bits (67), Expect = 3.9
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
E G +G+ P P G +G G +G G L G P P HPG G+
Sbjct: 647 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKG----PQGKPGLAGLPGADGPPGHPGKEGQS 702
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPGLR 474
++ + L P +G G PG R
Sbjct: 703 GEKGA------LGPPGPQGPIGYPGPR 723
Score = 30.0 bits (66), Expect = 5.1
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALP--- 462
+PG GA+G RG ++ G +G P PG PG R + E LP
Sbjct: 551 MPGEPGAKGDRG-FDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEA 609
Query: 463 ------LTRGSPGLPGLRPG 476
RG+PG PG +PG
Sbjct: 610 GPRGLLGPRGTPGAPG-QPG 628
Score = 30.0 bits (66), Expect = 5.1
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGV--- 443
G + +GS+ P PGA G +G RG+ + + G RGS P PG
Sbjct: 808 GRQGPKGSTG-FPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGT 866
Query: 444 ------PGRRDQRRSEVEPPTLALPLTRGSPGLPG 472
PG +R + + P +G PG PG
Sbjct: 867 SGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPG 901
Score = 30.0 bits (66), Expect = 5.1
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPA---HSSPALHPGVPGRR 447
AG E +G P + G G G+RG + E G +G+P P PG G
Sbjct: 963 AGKEGAKGDPGPQG-ISGKDGPAGLRG-FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1020
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+R S + LP G G PG
Sbjct: 1021 GERGSAGTAGPIGLPGRPGPQGPPG 1045
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 20/108 (18%)
Query: 388 EQEAGSEALRGSSAP-----HPLVPGAVGAEGVRGL--------------WEQEVGSKAL 428
E ++G + G P +P G GA+GVRGL ++ ++G K
Sbjct: 699 EGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGD 758
Query: 429 RGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
RG P G G + + +P +G G+PGL PG
Sbjct: 759 RGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGL-PG 805
Score = 29.3 bits (64), Expect = 8.7
Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 23/100 (23%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSP---------AHSSPALH 440
EAG G P PGA GAEG +G E G+K G+ PA
Sbjct: 1313 EAGPPGPPGKRGP----PGAAGAEGRQG----EKGAKGEAGAEGPPGKTGPVGPQGPAGK 1364
Query: 441 P------GVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
P G+PG ++ P G PGLPGL+
Sbjct: 1365 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK 1404
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 39.7 bits (91), Expect = 0.006
Identities = 29/83 (34%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 392 GSEALRGSSAP--HPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
G E LRG P +PGA G +G G G L+G P HPG+ G
Sbjct: 1405 GPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPP-GLPGLKGDPGSKGEKGHPGLIGLIGP 1463
Query: 450 RRSEVEPPTLALPLTRGSPGLPG 472
+ E LP T+GSPG G
Sbjct: 1464 PGEQGEKGDRGLPGTQGSPGAKG 1486
Score = 31.6 bits (70), Expect = 1.8
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
+ G +G + P P G VG +G G E G RG P P G+PG +
Sbjct: 950 QRGETGFQGKTGP-PGPGGVVGPQGPTG----ETGPIGERGHPGPPGPPGEQGLPGAAGK 1004
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
++ +P + G GL G PG
Sbjct: 1005 EGAKGDPGPQGISGKDGPAGLRGF-PG 1030
Score = 31.6 bits (70), Expect = 1.8
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 406 VPGAVGAEGVRG-LWEQEVGSK----ALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLA 460
+PGA G EG +G Q + K LRG P G PG + + P +
Sbjct: 998 LPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVG 1057
Query: 461 LPLTRGSP------GLPGLRPG 476
P RGS GLPG RPG
Sbjct: 1058 SPGERGSAGTAGPIGLPG-RPG 1078
Score = 31.2 bits (69), Expect = 2.3
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 7/72 (9%)
Query: 401 APHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLA 460
A +P PG G G +G E G K G P + P PG G + P +
Sbjct: 1260 AGNPGPPGEAGVGGPKG----ERGEKGEAGPPGAAGP---PGAKGPPGDDGPKGNPGPVG 1312
Query: 461 LPLTRGSPGLPG 472
P G PG PG
Sbjct: 1313 FPGDPGPPGEPG 1324
Score = 30.4 bits (67), Expect = 3.9
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRR 447
E G +G+ P P G +G G +G G L G P P HPG G+
Sbjct: 686 EPGPPGQQGNPGPQGLPGPQGPIGPPGEKG----PQGKPGLAGLPGADGPPGHPGKEGQS 741
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPGLR 474
++ + L P +G G PG R
Sbjct: 742 GEKGA------LGPPGPQGPIGYPGPR 762
Score = 30.0 bits (66), Expect = 5.1
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 406 VPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALP--- 462
+PG GA+G RG ++ G +G P PG PG R + E LP
Sbjct: 590 MPGEPGAKGDRG-FDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEA 648
Query: 463 ------LTRGSPGLPGLRPG 476
RG+PG PG +PG
Sbjct: 649 GPRGLLGPRGTPGAPG-QPG 667
Score = 30.0 bits (66), Expect = 5.1
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 15/95 (15%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQ-----EVGSKALRGSPAHSSPALHPGV--- 443
G + +GS+ P PGA G +G RG+ + + G RGS P PG
Sbjct: 847 GRQGPKGSTG-FPGFPGANGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGT 905
Query: 444 ------PGRRDQRRSEVEPPTLALPLTRGSPGLPG 472
PG +R + + P +G PG PG
Sbjct: 906 SGGDGPPGPPGERGPQGPQGPVGFPGPKGPPGPPG 940
Score = 30.0 bits (66), Expect = 5.1
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 391 AGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPA---HSSPALHPGVPGRR 447
AG E +G P + G G G+RG + E G +G+P P PG G
Sbjct: 1002 AGKEGAKGDPGPQG-ISGKDGPAGLRG-FPGERGLPGAQGAPGLKGGEGPQGPPGPVGSP 1059
Query: 448 DQRRSEVEPPTLALPLTRGSPGLPG 472
+R S + LP G G PG
Sbjct: 1060 GERGSAGTAGPIGLPGRPGPQGPPG 1084
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 20/108 (18%)
Query: 388 EQEAGSEALRGSSAP-----HPLVPGAVGAEGVRGL--------------WEQEVGSKAL 428
E ++G + G P +P G GA+GVRGL ++ ++G K
Sbjct: 738 EGQSGEKGALGPPGPQGPIGYPGPRGVKGADGVRGLKGSKGEKGEDGFPGFKGDMGLKGD 797
Query: 429 RGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPG 476
RG P G G + + +P +G G+PGL PG
Sbjct: 798 RGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQAGEKGKLGVPGL-PG 844
Score = 29.3 bits (64), Expect = 8.7
Identities = 31/100 (31%), Positives = 38/100 (38%), Gaps = 23/100 (23%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSP---------AHSSPALH 440
EAG G P PGA GAEG +G E G+K G+ PA
Sbjct: 1352 EAGPPGPPGKRGP----PGAAGAEGRQG----EKGAKGEAGAEGPPGKTGPVGPQGPAGK 1403
Query: 441 P------GVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
P G+PG ++ P G PGLPGL+
Sbjct: 1404 PGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLK 1443
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 39.7 bits (91), Expect = 0.006
Identities = 38/146 (26%), Positives = 61/146 (41%), Gaps = 14/146 (9%)
Query: 362 MPGADDGLRVVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGL--W 419
MPG+ + D+ P F+ + + E G+ G P PG G +G+ G +
Sbjct: 528 MPGSKGEMGAKGDKGSP-GFYGKKGAKGEKGNAGFPGLPGPAG-EPGRHGKDGLMGSPGF 585
Query: 420 EQEVGSKALRGSPAHSSPALHPGVPGRRDQR-----RSEVEPPTLALPLTRGSPGLPGLR 474
+ E GS G+P PG+PG R + E+ PP +G+PG+PGL
Sbjct: 586 KGEAGSP---GAPGQDGTRGEPGIPGFPGNRGLMGQKGEIGPP--GQQGKKGAPGMPGLM 640
Query: 475 PGCISNSSSGSFSASSSQAVSPVSGL 500
S G+ + S+ + G+
Sbjct: 641 GSNGSPGQPGTPGSKGSKGEPGIQGM 666
Score = 37.4 bits (85), Expect = 0.032
Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
EAGS G PG G G RGL +G K G P PG+PG
Sbjct: 588 EAGSPGAPGQDGTRG-EPGIPGFPGNRGL----MGQKGEIGPPGQQGKKGAPGMPGLMGS 642
Query: 450 RRSEVEPPTLALPLTRGSPGLPGLRPG 476
S +P T ++G PG+ G+ PG
Sbjct: 643 NGSPGQPGTPGSKGSKGEPGIQGM-PG 668
Score = 32.3 bits (72), Expect = 1.0
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 404 PLVPGAVGAEGVRGL--WEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLAL 461
P PG +G EG RGL G L G P G+PGR ++ S+
Sbjct: 830 PGPPGPIGPEGPRGLPGLPGRDGVPGLVGVPGRPGVRGLKGLPGRNGEKGSQ----GFGY 885
Query: 462 PLTRGSPGLPG 472
P +G PG PG
Sbjct: 886 PGEQGPPGPPG 896
Score = 32.0 bits (71), Expect = 1.3
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 13/69 (18%)
Query: 406 VPGAVGAEGVRGLWEQ--EVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPTLALPL 463
VPG G G++GL + E GS+ G P P PG PG PP ++
Sbjct: 859 VPGRPGVRGLKGLPGRNGEKGSQGF-GYPGEQGP---PGPPGPEG-------PPGISKEG 907
Query: 464 TRGSPGLPG 472
G PGLPG
Sbjct: 908 PPGDPGLPG 916
Score = 31.6 bits (70), Expect = 1.8
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 18/98 (18%)
Query: 404 PLVPGAVGAEGVRGL--WEQEV---GSKALRGSPAHSSPALHPGVPGRRDQRRSEVEPPT 458
P VPG+ G +G RGL ++ E G K RG P P LH G+PG + + ++ +
Sbjct: 487 PGVPGSPGIQGARGLPGYKGEPGRDGDKGDRGLPGF--PGLH-GMPGSKGEMGAKGD--- 540
Query: 459 LALPLTRGSPGLPGLRPGCISNSSSGSFSASSSQAVSP 496
+GSPG G + G + F A P
Sbjct: 541 ------KGSPGFYG-KKGAKGEKGNAGFPGLPGPAGEP 571
Score = 31.2 bits (69), Expect = 2.3
Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 397 RGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRRSEVEP 456
+G P P G GA G+ GL GS G+P PG+ G + EP
Sbjct: 619 KGEIGP-PGQQGKKGAPGMPGLMGSN-GSPGQPGTPGSKGSKGEPGIQGMPGASGLKGEP 676
Query: 457 PTLALPLTRGSPGLPGLR 474
P G GLPG++
Sbjct: 677 GATGSPGEPGYMGLPGIQ 694
Score = 30.8 bits (68), Expect = 3.0
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 392 GSEALRGS--SAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSP-AHSSPALH-----PGV 443
G L GS S P PG+ G++G G+ + G+ L+G P A SP PG+
Sbjct: 635 GMPGLMGSNGSPGQPGTPGSKGSKGEPGI-QGMPGASGLKGEPGATGSPGEPGYMGLPGI 693
Query: 444 PGRRDQRRSEVEPPTLALPLTRGSPGLPG 472
G++ + ++ E G G+PG
Sbjct: 694 QGKKGDKGNQGEKGIQGQKGENGRQGIPG 722
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 39.7 bits (91), Expect = 0.006
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G++ LRG + + G G +G RGL + E G + L G+P PG G + R
Sbjct: 466 GAQGLRGITG----IVGDKGEKGARGL-DGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRG 520
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
+E LP +G GLPG+
Sbjct: 521 AEGARGIPGLPGPKGDTGLPGV 542
Score = 38.9 bits (89), Expect = 0.011
Identities = 34/98 (34%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALH-----PGVP 444
+ G L G P PGA+G G +G ++G K RG P L PG P
Sbjct: 812 QMGIRGLPGIKGP----PGALGLRGPKG----DLGEKGERGPPGRGPNGLPGAIGLPGDP 863
Query: 445 GR----RDQRRSEVEPPTLA-LPLTRGSPGLPGLRPGC 477
G R+ R E PP +A +P G PG PGL C
Sbjct: 864 GPASYGRNGRDGERGPPGVAGIPGVPGPPGPPGLPGFC 901
Score = 37.4 bits (85), Expect = 0.032
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ-- 449
GS G P P PG G G+ G E+G G P P PG PG R
Sbjct: 350 GSRGFPGRGIPGP--PGPPGTAGLPG----ELGRVGPVGDPGRRGPPGPPGPPGPRGTIG 403
Query: 450 -RRSEVEPPTLALPLTRGSPGLPGLR 474
+ P P G PGLPG+R
Sbjct: 404 FHDGDPLCPNACPPGRSGYPGLPGMR 429
Score = 35.8 bits (81), Expect = 0.093
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSP-AHSSPALH-------- 440
E G+ L G P L PGA G +G RG E G K RG+ A P L
Sbjct: 482 EKGARGLDGEPGPQGL-PGAPGDQGQRGP-PGEAGPKGDRGAEGARGIPGLPGPKGDTGL 539
Query: 441 ---------PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPGCISNSSSGS 485
PG+PG + + P L G PG+PG + S+G+
Sbjct: 540 PGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGA 593
Score = 34.3 bits (77), Expect = 0.27
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G + G P P VPG G +G RG + G G P PG PG
Sbjct: 272 GEQGPPGPPGP-PGVPGIDGIDGDRGP-KGPPGPPGPAGEPGKPGAPGKPGTPGADGLTG 329
Query: 452 SEVEPPTLALPLTRGSPGLPGLR 474
+ P ++ +G PG+PG R
Sbjct: 330 PDGSPGSIGSKGQKGEPGVPGSR 352
Score = 31.6 bits (70), Expect = 1.8
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 392 GSEALRGS--SAPHPLVPGAVGAEGVRGLWEQ--EVGSKA---LRGSPAHSSPALHPGVP 444
G++ + G S P PG +G G G EVG + L GS P PG+P
Sbjct: 580 GAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLP 639
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
G+ S LP G PGLPG++
Sbjct: 640 GKLGSLGSP------GLPGLPGPPGLPGMK 663
Score = 30.8 bits (68), Expect = 3.0
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 392 GSEALRGS--SAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
GS L G S P +PG G G+ G+ K RG P G G +
Sbjct: 634 GSPGLPGKLGSLGSPGLPGLPGPPGLPGM-------KGDRGVVGEPGPKGEQGASGEEGE 686
Query: 450 RRSEVEPPTLALPLTRGS---PGLPGLR 474
E + LP +GS PG PGLR
Sbjct: 687 AGERGELGDIGLPGPKGSAGNPGEPGLR 714
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPG------VPG 445
GS L G P P +PG G GV G E G K +G+ A G +PG
Sbjct: 646 GSPGLPGLPGP-PGLPGMKGDRGVVG----EPGPKGEQGASGEEGEAGERGELGDIGLPG 700
Query: 446 RRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
+ + EP +RG PG+ G R
Sbjct: 701 PKGSAGNPGEPGLRGPEGSRGLPGVEGPR 729
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 39.7 bits (91), Expect = 0.006
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G++ LRG + + G G +G RGL + E G + L G+P PG G + R
Sbjct: 223 GAQGLRGITG----IVGDKGEKGARGL-DGEPGPQGLPGAPGDQGQRGPPGEAGPKGDRG 277
Query: 452 SEVEPPTLALPLTRGSPGLPGL 473
+E LP +G GLPG+
Sbjct: 278 AEGARGIPGLPGPKGDTGLPGV 299
Score = 38.9 bits (89), Expect = 0.011
Identities = 34/98 (34%), Positives = 42/98 (42%), Gaps = 18/98 (18%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALH-----PGVP 444
+ G L G P PGA+G G +G ++G K RG P L PG P
Sbjct: 569 QMGIRGLPGIKGP----PGALGLRGPKG----DLGEKGERGPPGRGPNGLPGAIGLPGDP 620
Query: 445 GR----RDQRRSEVEPPTLA-LPLTRGSPGLPGLRPGC 477
G R+ R E PP +A +P G PG PGL C
Sbjct: 621 GPASYGRNGRDGERGPPGVAGIPGVPGPPGPPGLPGFC 658
Score = 37.4 bits (85), Expect = 0.032
Identities = 29/86 (33%), Positives = 33/86 (38%), Gaps = 9/86 (10%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ-- 449
GS G P P PG G G+ G E+G G P P PG PG R
Sbjct: 107 GSRGFPGRGIPGP--PGPPGTAGLPG----ELGRVGPVGDPGRRGPPGPPGPPGPRGTIG 160
Query: 450 -RRSEVEPPTLALPLTRGSPGLPGLR 474
+ P P G PGLPG+R
Sbjct: 161 FHDGDPLCPNACPPGRSGYPGLPGMR 186
Score = 35.8 bits (81), Expect = 0.093
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 20/114 (17%)
Query: 390 EAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSP-AHSSPALH-------- 440
E G+ L G P L PGA G +G RG E G K RG+ A P L
Sbjct: 239 EKGARGLDGEPGPQGL-PGAPGDQGQRGP-PGEAGPKGDRGAEGARGIPGLPGPKGDTGL 296
Query: 441 ---------PGVPGRRDQRRSEVEPPTLALPLTRGSPGLPGLRPGCISNSSSGS 485
PG+PG + + P L G PG+PG + S+G+
Sbjct: 297 PGVDGRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGA 350
Score = 34.3 bits (77), Expect = 0.27
Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQRR 451
G + G P P VPG G +G RG + G G P PG PG
Sbjct: 29 GEQGPPGPPGP-PGVPGIDGIDGDRGP-KGPPGPPGPAGEPGKPGAPGKPGTPGADGLTG 86
Query: 452 SEVEPPTLALPLTRGSPGLPGLR 474
+ P ++ +G PG+PG R
Sbjct: 87 PDGSPGSIGSKGQKGEPGVPGSR 109
Score = 31.6 bits (70), Expect = 1.8
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 392 GSEALRGS--SAPHPLVPGAVGAEGVRGLWEQ--EVGSKA---LRGSPAHSSPALHPGVP 444
G++ + G S P PG +G G G EVG + L GS P PG+P
Sbjct: 337 GAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQGLPGSRGELGPVGSPGLP 396
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
G+ S LP G PGLPG++
Sbjct: 397 GKLGSLGSP------GLPGLPGPPGLPGMK 420
Score = 30.8 bits (68), Expect = 3.0
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 12/88 (13%)
Query: 392 GSEALRGS--SAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVPGRRDQ 449
GS L G S P +PG G G+ G+ K RG P G G +
Sbjct: 391 GSPGLPGKLGSLGSPGLPGLPGPPGLPGM-------KGDRGVVGEPGPKGEQGASGEEGE 443
Query: 450 RRSEVEPPTLALPLTRGS---PGLPGLR 474
E + LP +GS PG PGLR
Sbjct: 444 AGERGELGDIGLPGPKGSAGNPGEPGLR 471
Score = 29.6 bits (65), Expect = 6.7
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 392 GSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPG------VPG 445
GS L G P P +PG G GV G E G K +G+ A G +PG
Sbjct: 403 GSPGLPGLPGP-PGLPGMKGDRGVVG----EPGPKGEQGASGEEGEAGERGELGDIGLPG 457
Query: 446 RRDQRRSEVEPPTLALPLTRGSPGLPGLR 474
+ + EP +RG PG+ G R
Sbjct: 458 PKGSAGNPGEPGLRGPEGSRGLPGVEGPR 486
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 39.3 bits (90), Expect = 0.008
Identities = 29/89 (32%), Positives = 37/89 (41%), Gaps = 9/89 (10%)
Query: 390 EAGSEALRGSSAPH--PLVPGAVG---AEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
E G +G P P +PG +G EG RG E G + G P P G P
Sbjct: 90 ELGRPGRKGRPGPPGVPGMPGPIGWPGPEGPRG----EKGDLGMMGLPGSRGPMGSKGYP 145
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPGL 473
G R ++ S E L +G PG PG+
Sbjct: 146 GSRGEKGSRGEKGDLGPKGEKGFPGFPGM 174
Score = 34.7 bits (78), Expect = 0.21
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 12/88 (13%)
Query: 390 EAGSEALRGSSAPH-----PLVPGAVGAEGVRGLWEQEVGSKALRGSPAHSSPALHPGVP 444
E GS +G P P PG +G +G E+G K G H P PG
Sbjct: 150 EKGSRGEKGDLGPKGEKGFPGFPGMLGQKG-------EMGPKGEPGIAGHRGPTGRPGKR 202
Query: 445 GRRDQRRSEVEPPTLALPLTRGSPGLPG 472
G++ Q+ P G PG PG
Sbjct: 203 GKQGQKGDSGVMGPPGKPGPSGQPGRPG 230
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,482,383
Number of Sequences: 37866
Number of extensions: 1408233
Number of successful extensions: 10777
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 359
Number of HSP's that attempted gapping in prelim test: 8507
Number of HSP's gapped (non-prelim): 2099
length of query: 500
length of database: 18,247,518
effective HSP length: 106
effective length of query: 394
effective length of database: 14,233,722
effective search space: 5608086468
effective search space used: 5608086468
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.