Guide to the Human Genome
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Name: LOC100288194 Sequence: fasta or formatted (500aa) NCBI GI: 239745851
Description:

PREDICTED: hypothetical protein XP_002343605

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         52           2
 C cysteine            3.6         18           2
 D aspartate           1.8          9           2
 E glutamate           4.6         23           2
 F phenylalanine       1.4          7           1
 G glycine            10.2         51           2
 H histidine           2.0         10           1
 I isoleucine          1.2          6           1
 K lysine              3.0         15           2
 L leucine            10.2         51           3
 M methionine          2.6         13           1
 N asparagine          1.4          7           1
 P proline             9.8         49           3
 Q glutamine           3.2         16           1
 R arginine            9.6         48           2
 S serine             13.0         65           3
 T threonine           5.0         25           2
 V valine              4.0         20           2
 W tryptophan          2.6         13           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343605 
LOC100291129          0.894   PREDICTED: hypothetical protein XP_002347815 
LOC100294343          0.894   PREDICTED: hypothetical protein XP_002344111 
LOC100293513          0.863   PREDICTED: hypothetical protein 
GATA5                 0.021   GATA binding protein 5 
COL4A3                0.020   alpha 3 type IV collagen isoform 5 precursor 
COL4A3                0.020   alpha 3 type IV collagen isoform 4 precursor 
COL4A3                0.020   alpha 3 type IV collagen isoform 2 precursor 
COL4A3                0.020   alpha 3 type IV collagen isoform 1 precursor 
COL7A1                0.019   alpha 1 type VII collagen precursor 
COL5A1                0.018   alpha 1 type V collagen preproprotein 
COL4A5                0.017   type IV collagen alpha 5 isoform 2 precursor 
COL4A5                0.017   type IV collagen alpha 5 isoform 1 precursor 
COL4A5                0.017   type IV collagen alpha 5 isoform 3 precursor 
GLTSCR1               0.016   glioma tumor suppressor candidate region gene 1 [Ho...
COL3A1                0.016   collagen type III alpha 1 preproprotein 
LOC100293055          0.016   PREDICTED: similar to COL22A1 protein 
COL6A1                0.016   collagen, type VI, alpha 1 precursor 
COL16A1               0.016   alpha 1 type XVI collagen precursor 
COL22A1               0.016   collagen, type XXII, alpha 1 
COL9A2                0.015   alpha 2 type IX collagen 
COL2A1                0.015   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.015   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL11A1               0.015   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.015   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.015   alpha 1 type XI collagen isoform A preproprotein [Ho...
COL21A1               0.015   collagen, type XXI, alpha 1 precursor 
COL9A1                0.015   alpha 1 type IX collagen isoform 1 precursor 
COL9A1                0.015   alpha 1 type IX collagen isoform 2 precursor 
COLQ                  0.014   acetylcholinesterase collagen-like tail subunit iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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