Guide to the Human Genome
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Name: LOC100293513 Sequence: fasta or formatted (743aa) NCBI GI: 239756839
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.0         89           3
 C cysteine            2.8         21           2
 D aspartate           2.0         15           2
 E glutamate           4.2         31           2
 F phenylalanine       1.1          8           1
 G glycine            11.4         85           3
 H histidine           3.2         24           2
 I isoleucine          1.5         11           2
 K lysine              2.8         21           2
 L leucine            10.4         77           3
 M methionine          2.0         15           1
 N asparagine          0.9          7           1
 P proline            10.1         75           3
 Q glutamine           4.4         33           2
 R arginine           10.1         75           3
 S serine              8.3         62           2
 T threonine           4.6         34           2
 V valine              5.4         40           3
 W tryptophan          2.2         16           1
 Y tyrosine            0.5          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100294343          0.888   PREDICTED: hypothetical protein XP_002344111 
LOC100291129          0.886   PREDICTED: hypothetical protein XP_002347815 
LOC100288194          0.576   PREDICTED: hypothetical protein XP_002343605 
GATA5                 0.014   GATA binding protein 5 
FLJ31945              0.013   PREDICTED: hypothetical protein 
LOC728767             0.012   PREDICTED: hypothetical protein 
LOC728767             0.012   PREDICTED: hypothetical protein 
SRCAP                 0.012   Snf2-related CBP activator protein 
SAMD1                 0.012   sterile alpha motif domain containing 1 
LOC100290946          0.011   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.011   PREDICTED: hypothetical protein XP_002344246 
LOC100293327          0.011   PREDICTED: hypothetical protein 
LOC100291252          0.011   PREDICTED: hypothetical protein XP_002347634 
LOC100287254          0.011   PREDICTED: hypothetical protein XP_002343484 
GLTSCR1               0.011   glioma tumor suppressor candidate region gene 1 [Ho...
ELN                   0.011   elastin isoform d precursor 
ELN                   0.011   elastin isoform c precursor 
CDKN1C                0.010   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.010   cyclin-dependent kinase inhibitor 1C isoform b [Hom...
CDKN1C                0.010   cyclin-dependent kinase inhibitor 1C isoform a 
WDR33                 0.010   WD repeat domain 33 isoform 1 
COL11A1               0.009   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.009   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.009   alpha 1 type XI collagen isoform A preproprotein [Ho...
LOC100130897          0.009   PREDICTED: hypothetical protein 
LOC100130897          0.009   PREDICTED: hypothetical protein 
FIGNL2                0.009   fidgetin-like 2 
C1orf77               0.009   small protein rich in arginine and glycine 
FLJ22184              0.009   PREDICTED: hypothetical protein FLJ22184 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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