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Search of human proteins with 239745104
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239745104 PREDICTED: hypothetical protein XP_002343360 [Homo
sapiens]
(152 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239745104 PREDICTED: hypothetical protein XP_002343360 [Homo ... 333 3e-92
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 42 3e-04
gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo ... 39 0.002
gi|239508743 PREDICTED: hypothetical protein [Homo sapiens] 39 0.002
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.004
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.004
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.005
gi|38372901 Sp1 transcription factor isoform a [Homo sapiens] 37 0.008
gi|218751903 Sp1 transcription factor isoform b [Homo sapiens] 37 0.008
gi|239757743 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239752237 PREDICTED: hypothetical protein XP_002348168 [Homo ... 37 0.008
gi|239746757 PREDICTED: hypothetical protein XP_002343835 [Homo ... 37 0.008
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 37 0.008
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 36 0.014
gi|61699226 pulmonary surfactant-associated protein D precursor ... 35 0.019
gi|239745424 PREDICTED: hypothetical protein XP_002343463 [Homo ... 35 0.019
gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens] 35 0.019
gi|239754505 PREDICTED: hypothetical protein XP_002346016 [Homo ... 35 0.025
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 35 0.025
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 35 0.025
gi|169168202 PREDICTED: hypothetical protein [Homo sapiens] 35 0.032
gi|169167967 PREDICTED: hypothetical protein [Homo sapiens] 35 0.032
gi|169167681 PREDICTED: hypothetical protein [Homo sapiens] 35 0.032
gi|51972220 keratin associated protein 5-2 [Homo sapiens] 35 0.032
gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo s... 34 0.042
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 34 0.042
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 34 0.042
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 34 0.042
gi|24432011 progestin and adipoQ receptor family member VI isofo... 34 0.042
gi|50511941 EMI domain containing 1 [Homo sapiens] 34 0.042
>gi|239745104 PREDICTED: hypothetical protein XP_002343360 [Homo
sapiens]
Length = 152
Score = 333 bits (855), Expect = 3e-92
Identities = 152/152 (100%), Positives = 152/152 (100%)
Query: 1 MLFSFEHKAVALSATRRATPRPQPWVLGLQGRGGEGDARTCGAGRERGLPGPALDTEPRW 60
MLFSFEHKAVALSATRRATPRPQPWVLGLQGRGGEGDARTCGAGRERGLPGPALDTEPRW
Sbjct: 1 MLFSFEHKAVALSATRRATPRPQPWVLGLQGRGGEGDARTCGAGRERGLPGPALDTEPRW 60
Query: 61 DPRRLCEALRAPGRRLEGAGQPPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQ 120
DPRRLCEALRAPGRRLEGAGQPPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQ
Sbjct: 61 DPRRLCEALRAPGRRLEGAGQPPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQ 120
Query: 121 GTSGARPCFCRAPGYPWMAALCPRRRPGRHSG 152
GTSGARPCFCRAPGYPWMAALCPRRRPGRHSG
Sbjct: 121 GTSGARPCFCRAPGYPWMAALCPRRRPGRHSG 152
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 41.6 bits (96), Expect = 3e-04
Identities = 37/109 (33%), Positives = 43/109 (39%), Gaps = 15/109 (13%)
Query: 20 PRPQPWVLG--------LQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRA 71
PR +PW G ++ GG + R G+ RG PGPA L
Sbjct: 1230 PRKRPWHDGPGTSEHREMEAPGGPSEDR---GGKGRGGPGPAQRVPKSGRSSSLDGEHHD 1286
Query: 72 PGRRLEGAGQPPATSGGPATSGRSKEPWGHISGCGDPP---GAFRGSGR 117
R E G PP SG P+ GRS WG S P GA RG GR
Sbjct: 1287 GYHRDEPFGGPPG-SGTPSRGGRSGSNWGRGSNMNSGPPRRGASRGGGR 1334
>gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo
sapiens]
Length = 128
Score = 38.5 bits (88), Expect = 0.002
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 49 LPGPALDTEPR-WDPRRLCEALRAPGR-RLEGAGQ--PPATSGGPATSGRSKEPWGHISG 104
LPGP L P RRL PGR R G G+ PP T G +E
Sbjct: 2 LPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTV---TEVGWGREVRRGFEA 58
Query: 105 CGDPPGAFRGSGRICQ-------GTSGARPCFCRAPGYPWMAA 140
C P G+ G+ R+C+ G + P R PG PW +A
Sbjct: 59 CARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSA 101
Score = 30.4 bits (67), Expect = 0.61
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 36 GDARTCGAGRERGLPGPALDTEPRW--DPRRLCEALRAPGR---------RLEGAGQPPA 84
G R G GRER P P + TE W + RR EA P R EGA P
Sbjct: 27 GRIRRRGLGRER--PPPTV-TEVGWGREVRRGFEACARPVGSHSGAPRVCRAEGAASPGP 83
Query: 85 TSGGPATSGRSKEPWG 100
S P + R PWG
Sbjct: 84 PSSSPHLTRRPGGPWG 99
>gi|239508743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 38.5 bits (88), Expect = 0.002
Identities = 34/103 (33%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Query: 49 LPGPALDTEPR-WDPRRLCEALRAPGR-RLEGAGQ--PPATSGGPATSGRSKEPWGHISG 104
LPGP L P RRL PGR R G G+ PP T G +E
Sbjct: 2 LPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTV---TEVGWGREVRRGFEA 58
Query: 105 CGDPPGAFRGSGRICQ-------GTSGARPCFCRAPGYPWMAA 140
C P G+ G+ R+C+ G + P R PG PW +A
Sbjct: 59 CARPVGSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSA 101
Score = 30.4 bits (67), Expect = 0.61
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 36 GDARTCGAGRERGLPGPALDTEPRW--DPRRLCEALRAPGR---------RLEGAGQPPA 84
G R G GRER P P + TE W + RR EA P R EGA P
Sbjct: 27 GRIRRRGLGRER--PPPTV-TEVGWGREVRRGFEACARPVGSHSGAPRVCRAEGAASPGP 83
Query: 85 TSGGPATSGRSKEPWG 100
S P + R PWG
Sbjct: 84 PSSSPHLTRRPGGPWG 99
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.7 bits (86), Expect = 0.004
Identities = 46/134 (34%), Positives = 51/134 (38%), Gaps = 32/134 (23%)
Query: 28 GLQG-RGGEGDARTCGAGRERGLPGPALDTEP---------RWDPRRLCEALRAPGRRLE 77
GL G RG G A GA G PGPA P P EA R E
Sbjct: 327 GLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 386
Query: 78 GAGQP---PATSGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGARPCFCRAPG 134
GA P P T G P +G S P G PGA +G++GA P APG
Sbjct: 387 GAQGPRGEPGTPGSPGPAGASGNP-----GTDGIPGA--------KGSAGA-PGIAGAPG 432
Query: 135 YPWMAALCPRRRPG 148
+P PR PG
Sbjct: 433 FPG-----PRGPPG 441
Score = 37.4 bits (85), Expect = 0.005
Identities = 35/105 (33%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 23 QPWVLGLQGRGGE-GDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQ 81
QP G QG G+ GDA G G PGP T + P + GA
Sbjct: 844 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT-----------GVTGP-KGARGAQG 891
Query: 82 PPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGAR 126
PP +G P +GR P +G PPG SG+ G GAR
Sbjct: 892 PPGATGFPGAAGRVGPPGS--NGNPGPPGPPGPSGK--DGPKGAR 932
Score = 29.3 bits (64), Expect = 1.4
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 23 QPWVLGLQGRGG----EGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEG 78
+P GL+G G +G G ++G GPA + PR P + P + +G
Sbjct: 1123 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV-----GPSGK-DG 1176
Query: 79 AGQPPATSGGPATSGRSKEPWGHISGCGDPPG 110
A P G P GRS E +G PPG
Sbjct: 1177 ANGIPGPIGPPGPRGRSGE-----TGPAGPPG 1203
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.7 bits (86), Expect = 0.004
Identities = 46/134 (34%), Positives = 51/134 (38%), Gaps = 32/134 (23%)
Query: 28 GLQG-RGGEGDARTCGAGRERGLPGPALDTEP---------RWDPRRLCEALRAPGRRLE 77
GL G RG G A GA G PGPA P P EA R E
Sbjct: 258 GLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPE 317
Query: 78 GAGQP---PATSGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGARPCFCRAPG 134
GA P P T G P +G S P G PGA +G++GA P APG
Sbjct: 318 GAQGPRGEPGTPGSPGPAGASGNP-----GTDGIPGA--------KGSAGA-PGIAGAPG 363
Query: 135 YPWMAALCPRRRPG 148
+P PR PG
Sbjct: 364 FPG-----PRGPPG 372
Score = 37.4 bits (85), Expect = 0.005
Identities = 35/105 (33%), Positives = 42/105 (40%), Gaps = 17/105 (16%)
Query: 23 QPWVLGLQGRGGE-GDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQ 81
QP G QG G+ GDA G G PGP T + P + GA
Sbjct: 775 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPT-----------GVTGP-KGARGAQG 822
Query: 82 PPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGAR 126
PP +G P +GR P +G PPG SG+ G GAR
Sbjct: 823 PPGATGFPGAAGRVGPPGS--NGNPGPPGPPGPSGK--DGPKGAR 863
Score = 29.3 bits (64), Expect = 1.4
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 15/92 (16%)
Query: 23 QPWVLGLQGRGG----EGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEG 78
+P GL+G G +G G ++G GPA + PR P + P + +G
Sbjct: 1054 EPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPV-----GPSGK-DG 1107
Query: 79 AGQPPATSGGPATSGRSKEPWGHISGCGDPPG 110
A P G P GRS E +G PPG
Sbjct: 1108 ANGIPGPIGPPGPRGRSGE-----TGPAGPPG 1134
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.4 bits (85), Expect = 0.005
Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 33 GGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRR-LEGAGQPPATSGGPAT 91
G +G+ GA + G PGPA P P + + APG + G+ PP +G P
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPA---GPAGPPGPIGN-VGAPGAKGARGSAGPPGATGFPGA 879
Query: 92 SGR--SKEPWGHISGCGDPPGAFRGSGRICQGTSG--ARPCFCRAPGYP 136
+GR P G+ G P A + G+ +G +G RP PG P
Sbjct: 880 AGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPP 928
Score = 30.8 bits (68), Expect = 0.46
Identities = 30/86 (34%), Positives = 31/86 (36%), Gaps = 14/86 (16%)
Query: 28 GLQGRGGE-GDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRR-LEGAGQPPAT 85
GL G GE G GA ERG PGP P L GR GA P
Sbjct: 974 GLPGPSGEPGKQGPSGASGERGPPGP-------MGPPGLAGPPGESGREGAPGAEGSPGR 1026
Query: 86 SGGPATSGRSKEPWGHISGCGDPPGA 111
G P G E +G PPGA
Sbjct: 1027 DGSPGAKGDRGE-----TGPAGPPGA 1047
Score = 29.6 bits (65), Expect = 1.0
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 33 GGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSGGPATS 92
G +G A G ERG PGPA P+ P EA R L GA + G P
Sbjct: 497 GADGVAGPKGPAGERGSPGPA---GPKGSPG---EAGRPGEAGLPGAKGLTGSPGSPGPD 550
Query: 93 GRSKEPW-GHISGCGDPPG 110
G++ P G PPG
Sbjct: 551 GKTGPPGPAGQDGRPGPPG 569
Score = 29.3 bits (64), Expect = 1.4
Identities = 32/109 (29%), Positives = 39/109 (35%), Gaps = 22/109 (20%)
Query: 21 RPQPWVLGLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAG 80
R Q V+G G +G A G ERG+PGP A+ G+ E
Sbjct: 574 RGQAGVMGFPGP--KGAAGEPGKAGERGVPGPP-------------GAVGPAGKDGEAGA 618
Query: 81 QPPATSGGPATSGRSKEPWGH-----ISGCGDPPGAFRGSGRICQGTSG 124
Q P GPA + P G + G PPG G QG G
Sbjct: 619 QGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGE--QGVPG 665
Score = 28.5 bits (62), Expect = 2.3
Identities = 48/158 (30%), Positives = 53/158 (33%), Gaps = 38/158 (24%)
Query: 17 RATPRPQ-----PWVLGLQGR----------GGEGDARTCGAGRERGLPGPALDTEPRWD 61
R P PQ P GL G G +GDA G E G PG +
Sbjct: 244 RGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGEN-GAPGQMG 302
Query: 62 PRRLCEALRAPGRR-LEGAGQPPATSGGPATSGRSKEPWGHISGCGDP--PGAFRGSG-- 116
PR L PG R GA P G +G + P G G P PGA G
Sbjct: 303 PRGL------PGERGRPGAPGPAGARGNDGATGAAGPP-GPTGPAGPPGFPGAVGAKGEA 355
Query: 117 -----RICQGTSGARPCFCRAPGYPWMA-ALCPRRRPG 148
R +G G R PG P A A P PG
Sbjct: 356 GPQGPRGSEGPQGVR----GEPGPPGPAGAAGPAGNPG 389
Score = 26.9 bits (58), Expect = 6.7
Identities = 30/86 (34%), Positives = 32/86 (37%), Gaps = 17/86 (19%)
Query: 28 GLQGRGGE-GDARTCGAGRERGLPGP-ALDTEPRWDPRRLCEALRAPGRRLEGAGQPPAT 85
GLQG GE G A G +RG GP D P D R L G PP
Sbjct: 725 GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR----------GLTGPIGPPGP 774
Query: 86 SGGPATSGRSKEPWGHISGCGDPPGA 111
+G P G S SG P GA
Sbjct: 775 AGAPGDKGESGP-----SGPAGPTGA 795
>gi|38372901 Sp1 transcription factor isoform a [Homo sapiens]
Length = 785
Score = 36.6 bits (83), Expect = 0.008
Identities = 36/105 (34%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 27 LGLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAP-GRRLEGAGQPPAT 85
LGL G GG+G AG E G P D +P+ R EA P + EG G
Sbjct: 565 LGLHGAGGDG-IHDDTAGGEEGENSP--DAQPQAGRRTRREACTCPYCKDSEGRG----- 616
Query: 86 SGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGARPCFC 130
SG P G+ K+ HI GCG G + +G RP C
Sbjct: 617 SGDP---GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGERPFMC 658
>gi|218751903 Sp1 transcription factor isoform b [Homo sapiens]
Length = 778
Score = 36.6 bits (83), Expect = 0.008
Identities = 36/105 (34%), Positives = 44/105 (41%), Gaps = 12/105 (11%)
Query: 27 LGLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAP-GRRLEGAGQPPAT 85
LGL G GG+G AG E G P D +P+ R EA P + EG G
Sbjct: 558 LGLHGAGGDG-IHDDTAGGEEGENSP--DAQPQAGRRTRREACTCPYCKDSEGRG----- 609
Query: 86 SGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGARPCFC 130
SG P G+ K+ HI GCG G + +G RP C
Sbjct: 610 SGDP---GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGERPFMC 651
>gi|239757743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 36.6 bits (83), Expect = 0.008
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 31 GRGGEGDARTCGAGRERGLPGPA--LDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSGG 88
G G EG R AG + PGP E R DP RL + GR+ GA Q + +GG
Sbjct: 155 GHGTEGSYRET-AGWDGTPPGPGHLQILERRSDPPRLAVRAQGRGRKSLGADQ-RSRAGG 212
Query: 89 PATSGRSKEPWGHISGCG 106
A G +EP + GCG
Sbjct: 213 KALEGAQEEP---VPGCG 227
>gi|239752237 PREDICTED: hypothetical protein XP_002348168 [Homo
sapiens]
Length = 217
Score = 36.6 bits (83), Expect = 0.008
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 31 GRGGEGDARTCGAGRERGLPGPA--LDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSGG 88
G G EG R AG + PGP E R DP RL + GR+ GA Q + +GG
Sbjct: 137 GHGTEGSYRET-AGWDGTPPGPGHLQILERRSDPPRLAVRAQGRGRKSLGADQ-RSRAGG 194
Query: 89 PATSGRSKEPWGHISGCG 106
A G +EP + GCG
Sbjct: 195 KALEGAQEEP---VPGCG 209
>gi|239746757 PREDICTED: hypothetical protein XP_002343835 [Homo
sapiens]
Length = 281
Score = 36.6 bits (83), Expect = 0.008
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 7/78 (8%)
Query: 31 GRGGEGDARTCGAGRERGLPGPA--LDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSGG 88
G G EG R AG + PGP E R DP RL + GR+ GA Q + +GG
Sbjct: 201 GHGTEGSYRET-AGWDGTPPGPGHLQILERRSDPPRLAVRAQGRGRKSLGADQ-RSRAGG 258
Query: 89 PATSGRSKEPWGHISGCG 106
A G +EP + GCG
Sbjct: 259 KALEGAQEEP---VPGCG 273
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 36.6 bits (83), Expect = 0.008
Identities = 36/117 (30%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Query: 32 RGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSGGPAT 91
+G EG + G +RGLPGP P+ +P + PG + G P GGP
Sbjct: 550 KGDEGKKGSKGNQGQRGLPGP---EGPKGEP-GIMGPFGMPGTSIPGPPGPKGDRGGPGI 605
Query: 92 SGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGARPCFCRAPGYPWMAALCPRRRPG 148
G EP I G P G G + G G + GYP + PR PG
Sbjct: 606 PGFKGEPGLSIRG---PKGVQGPRGPV--GAPG-----LKGDGYPGVPG--PRGLPG 650
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 35.8 bits (81), Expect = 0.014
Identities = 36/117 (30%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 20 PRPQPWVLGLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGA 79
PR P GL G G+G G GLPGP L T+ R E G+ ++G
Sbjct: 968 PRGDPGAPGLPGPPGKGKDGEPGLRGSPGLPGP-LGTKAACGKVRGSENCALGGQCVKGD 1026
Query: 80 GQPPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGARPCFCRAPGYP 136
P G P + G +P ++G PPG G +G+ G+R PG+P
Sbjct: 1027 RGAPGIPGSPGSRG---DPGIGVAG---PPGPSGPPGD--KGSPGSR----GLPGFP 1071
Score = 34.3 bits (77), Expect = 0.042
Identities = 36/110 (32%), Positives = 46/110 (41%), Gaps = 15/110 (13%)
Query: 28 GLQGRGG-EGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATS 86
GL+G G +G+ GA E G PGP PR DP A PG +G P
Sbjct: 940 GLRGTPGKDGERGEKGAAGEEGSPGP---VGPRGDP----GAPGLPGPPGKGKDGEPGLR 992
Query: 87 GGPATSGRSKEPWGHISGCGDPPGAFRGS--GRICQGTSGARPCFCRAPG 134
G P G P G + CG G+ + G+ +G GA P +PG
Sbjct: 993 GSPGLPG----PLGTKAACGKVRGSENCALGGQCVKGDRGA-PGIPGSPG 1037
Score = 32.3 bits (72), Expect = 0.16
Identities = 41/137 (29%), Positives = 51/137 (37%), Gaps = 20/137 (14%)
Query: 13 SATRRATPRPQPWVLGLQGRGGE-GDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRA 71
S+ R P P GL GR G G+ G G GL GP+ P+ + R A
Sbjct: 1494 SSQGRPGPPGPPGKDGLPGRAGPMGEPGRPGQG---GLEGPSGPIGPKGE-RGAKGDPGA 1549
Query: 72 PGRRLEGAGQPPATSGGPATSGRSKE-------------PWGH--ISGCGDPPGAFRGSG 116
PG L G PP G P G +K+ P GH + G PPG S
Sbjct: 1550 PGVGLRGEMGPPGIPGQPGEPGYAKDGLPGIPGPQGETGPAGHPGLPGPPGPPGQCDPSQ 1609
Query: 117 RICQGTSGARPCFCRAP 133
+ ARP + P
Sbjct: 1610 CAYFASLAARPGNVKGP 1626
>gi|61699226 pulmonary surfactant-associated protein D precursor
[Homo sapiens]
Length = 375
Score = 35.4 bits (80), Expect = 0.019
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 15/105 (14%)
Query: 32 RGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLE-GAGQPPATSGGPA 90
RG +GD GA + G+PG A P+ D + E PG + + G PP G P
Sbjct: 60 RGEKGDPGLPGAAGQAGMPGQAGPVGPKGDNGSVGE----PGPKGDTGPSGPPGPPGVPG 115
Query: 91 TSGRSKEPWGHISGCG-----DPPGAFRGSGRI----CQGTSGAR 126
+GR + P G G P G G + QG++GAR
Sbjct: 116 PAGR-EGPLGKQGNIGPQGKPGPKGEAGPKGEVGAPGMQGSAGAR 159
>gi|239745424 PREDICTED: hypothetical protein XP_002343463 [Homo
sapiens]
Length = 154
Score = 35.4 bits (80), Expect = 0.019
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 83 PATSGGPATSGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGAR----PCFCRAPGYPWM 138
P S P SG S+ G P G R+C+ ++G+ PC +P P+
Sbjct: 13 PVPSPSPPCSGTSRRERGWPGRRDRQPRWTPGQQRLCRRSAGSAWTHAPCCAESPTAPYH 72
Query: 139 AALCPRRRPGRHS 151
AL PR+R R +
Sbjct: 73 TALAPRKRQMRRT 85
>gi|18780273 collagen, type XXI, alpha 1 precursor [Homo sapiens]
Length = 957
Score = 35.4 bits (80), Expect = 0.019
Identities = 34/108 (31%), Positives = 40/108 (37%), Gaps = 20/108 (18%)
Query: 28 GLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSG 87
GL GR GE ++ G E+G PGP P PG EG PP G
Sbjct: 870 GLPGRNGEKGSQGFGYPGEQGPPGPPGPEGP-------------PGISKEG---PPGDPG 913
Query: 88 GPATSGRSKEPWGHISGCGDPPGAFRGSGRICQGTSGARPCFCRAPGY 135
P G +P I G PPG S +C R F + P Y
Sbjct: 914 LPGKDGDHGKP--GIQGQPGPPGICDPS--LCFSVIARRDPFRKGPNY 957
>gi|239754505 PREDICTED: hypothetical protein XP_002346016 [Homo
sapiens]
Length = 128
Score = 35.0 bits (79), Expect = 0.025
Identities = 33/103 (32%), Positives = 41/103 (39%), Gaps = 14/103 (13%)
Query: 49 LPGPALDTEPR-WDPRRLCEALRAPGR-RLEGAGQ--PPATSGGPATSGRSKEPWGHISG 104
LPGP L P RRL PGR R G G+ PP T G +E
Sbjct: 2 LPGPPLPPPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTV---TEVGWGREVRRGFEA 58
Query: 105 CGDPPGAFRGSGRICQ-------GTSGARPCFCRAPGYPWMAA 140
C P + G+ R+C+ G + P R PG PW +A
Sbjct: 59 CARPVVSHSGAPRVCRAEGAASPGPPSSSPHLTRRPGGPWGSA 101
Score = 30.0 bits (66), Expect = 0.79
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 36 GDARTCGAGRERGLPGPALDTEPRW--DPRRLCEALRAPGR---------RLEGAGQPPA 84
G R G GRER P P + TE W + RR EA P R EGA P
Sbjct: 27 GRIRRRGLGRER--PPPTV-TEVGWGREVRRGFEACARPVVSHSGAPRVCRAEGAASPGP 83
Query: 85 TSGGPATSGRSKEPWG 100
S P + R PWG
Sbjct: 84 PSSSPHLTRRPGGPWG 99
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 35.0 bits (79), Expect = 0.025
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 22/143 (15%)
Query: 13 SATRRATPRPQPWVLGLQGRGGEGDARTCGAGRERGLPG--PALDTEPRWDPRRLCEALR 70
S RR P+ W GGE A LP PA DT R +P +
Sbjct: 470 SGGRRGVGNPERW-------GGEAAAPRPSRVLLPELPAVDPARDT--RREPDAAAQRTE 520
Query: 71 APGRRLEGAGQPPATSGGPATSGRSKEPWGHISGCGDPPG-AFRGSGRICQGTSGARPCF 129
GR +G G PP+ GP S P G+PPG R + C
Sbjct: 521 LGGRVGKGPGAPPSALPGPRPRPDSLSP-------GEPPGPPTPPPARALPAAVASARCS 573
Query: 130 CRAPGYPWMAALCPRRRPGRHSG 152
R PG + R RPGR G
Sbjct: 574 LRDPG---GGSARIRSRPGRSGG 593
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 35.0 bits (79), Expect = 0.025
Identities = 42/143 (29%), Positives = 50/143 (34%), Gaps = 22/143 (15%)
Query: 13 SATRRATPRPQPWVLGLQGRGGEGDARTCGAGRERGLPG--PALDTEPRWDPRRLCEALR 70
S RR P+ W GGE A LP PA DT R +P +
Sbjct: 470 SGGRRGVGNPERW-------GGEAAAPRPSRVLLPELPAVDPARDT--RREPDAAAQRTE 520
Query: 71 APGRRLEGAGQPPATSGGPATSGRSKEPWGHISGCGDPPG-AFRGSGRICQGTSGARPCF 129
GR +G G PP+ GP S P G+PPG R + C
Sbjct: 521 LGGRVGKGPGAPPSALPGPRPRPDSLSP-------GEPPGPPTPPPARALPAAVASARCS 573
Query: 130 CRAPGYPWMAALCPRRRPGRHSG 152
R PG + R RPGR G
Sbjct: 574 LRDPG---GGSARIRSRPGRSGG 593
>gi|169168202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 34.7 bits (78), Expect = 0.032
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 28 GLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAP-GRRLEGAGQPPATS 86
G +G G GD A G P P L T + P + +P GRR G T
Sbjct: 119 GERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTG 178
Query: 87 GGPATSGRSKEPWGHIS 103
P S R +EP GH S
Sbjct: 179 LNPGLSPRLQEPRGHQS 195
>gi|169167967 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 34.7 bits (78), Expect = 0.032
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 28 GLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAP-GRRLEGAGQPPATS 86
G +G G GD A G P P L T + P + +P GRR G T
Sbjct: 119 GERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTG 178
Query: 87 GGPATSGRSKEPWGHIS 103
P S R +EP GH S
Sbjct: 179 LNPGLSPRLQEPRGHQS 195
>gi|169167681 PREDICTED: hypothetical protein [Homo sapiens]
Length = 460
Score = 34.7 bits (78), Expect = 0.032
Identities = 26/77 (33%), Positives = 31/77 (40%), Gaps = 1/77 (1%)
Query: 28 GLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAP-GRRLEGAGQPPATS 86
G +G G GD A G P P L T + P + +P GRR G T
Sbjct: 119 GERGSPGAGDVNPVSASSPPGRPDPLLLTTFVFPPGKTSAPRPSPGGRRGRPLGAARGTG 178
Query: 87 GGPATSGRSKEPWGHIS 103
P S R +EP GH S
Sbjct: 179 LNPGLSPRLQEPRGHQS 195
>gi|51972220 keratin associated protein 5-2 [Homo sapiens]
Length = 177
Score = 34.7 bits (78), Expect = 0.032
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 5/107 (4%)
Query: 31 GRGGEGDARTCGA-GRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSGGP 89
G G G + +CG G +P W P C + + G G G + GG
Sbjct: 39 GSGCGGCSSSCGGCGSRCYVPVCCCKPVCSWVPACSCTSCGSCGGSKGGCGSCGGSKGGC 98
Query: 90 ATSGRSKEPWGHI----SGCGDPPGAFRGSGRICQGTSGARPCFCRA 132
+ G SK G S C P G G C +S +PC C++
Sbjct: 99 GSCGGSKGGCGSCGCSQSSCCKPCCCSSGCGSSCCQSSCCKPCCCQS 145
>gi|89142737 alpha 3 type IV collagen isoform 5 precursor [Homo
sapiens]
Length = 1424
Score = 34.3 bits (77), Expect = 0.042
Identities = 42/132 (31%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 21 RPQPWVLGLQGR-GGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGA 79
R P GL GR G GDA G G PGP L A+ PG+ G
Sbjct: 1194 RGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP----------GLPGAI-IPGQT--GN 1240
Query: 80 GQPPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSG-RICQGTSG--ARPCFCRAPGYP 136
PP + G P G P H+ G G+ G + GT+G P APG P
Sbjct: 1241 RGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTP 1300
Query: 137 WMAALCPRRRPG 148
+ PR PG
Sbjct: 1301 GLPG--PRGDPG 1310
Score = 30.8 bits (68), Expect = 0.46
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 28 GLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSG 87
G G G +G+ G G PGP + PR + L + P G PP G
Sbjct: 614 GPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGE---LSVSTPVP-----GPPGPPGPPG 665
Query: 88 GPATSGRSKEPWGHISGCGDP 108
P G P G + CGDP
Sbjct: 666 HPGPQGPPGIP-GSLGKCGDP 685
Score = 28.5 bits (62), Expect = 2.3
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 20 PRPQPWVLGLQG-RGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEG 78
PR P G G +G +G+ G+ G GP R DP L + + PG
Sbjct: 1305 PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTL-KIISLPG----- 1358
Query: 79 AGQPPATSGGPATSGRSKEPW--GHISGCG 106
+ PP T G P G P G++ CG
Sbjct: 1359 SPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 34.3 bits (77), Expect = 0.042
Identities = 42/132 (31%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 21 RPQPWVLGLQGR-GGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGA 79
R P GL GR G GDA G G PGP L A+ PG+ G
Sbjct: 1194 RGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP----------GLPGAI-IPGQT--GN 1240
Query: 80 GQPPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSG-RICQGTSG--ARPCFCRAPGYP 136
PP + G P G P H+ G G+ G + GT+G P APG P
Sbjct: 1241 RGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTP 1300
Query: 137 WMAALCPRRRPG 148
+ PR PG
Sbjct: 1301 GLPG--PRGDPG 1310
Score = 30.8 bits (68), Expect = 0.46
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 28 GLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSG 87
G G G +G+ G G PGP + PR + L + P G PP G
Sbjct: 614 GPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGE---LSVSTPVP-----GPPGPPGPPG 665
Query: 88 GPATSGRSKEPWGHISGCGDP 108
P G P G + CGDP
Sbjct: 666 HPGPQGPPGIP-GSLGKCGDP 685
Score = 28.5 bits (62), Expect = 2.3
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 20 PRPQPWVLGLQG-RGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEG 78
PR P G G +G +G+ G+ G GP R DP L + + PG
Sbjct: 1305 PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTL-KIISLPG----- 1358
Query: 79 AGQPPATSGGPATSGRSKEPW--GHISGCG 106
+ PP T G P G P G++ CG
Sbjct: 1359 SPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 34.3 bits (77), Expect = 0.042
Identities = 42/132 (31%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 21 RPQPWVLGLQGR-GGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGA 79
R P GL GR G GDA G G PGP L A+ PG+ G
Sbjct: 1194 RGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP----------GLPGAI-IPGQT--GN 1240
Query: 80 GQPPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSG-RICQGTSG--ARPCFCRAPGYP 136
PP + G P G P H+ G G+ G + GT+G P APG P
Sbjct: 1241 RGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTP 1300
Query: 137 WMAALCPRRRPG 148
+ PR PG
Sbjct: 1301 GLPG--PRGDPG 1310
Score = 30.8 bits (68), Expect = 0.46
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 28 GLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSG 87
G G G +G+ G G PGP + PR + L + P G PP G
Sbjct: 614 GPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGE---LSVSTPVP-----GPPGPPGPPG 665
Query: 88 GPATSGRSKEPWGHISGCGDP 108
P G P G + CGDP
Sbjct: 666 HPGPQGPPGIP-GSLGKCGDP 685
Score = 28.5 bits (62), Expect = 2.3
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 20 PRPQPWVLGLQG-RGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEG 78
PR P G G +G +G+ G+ G GP R DP L + + PG
Sbjct: 1305 PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTL-KIISLPG----- 1358
Query: 79 AGQPPATSGGPATSGRSKEPW--GHISGCG 106
+ PP T G P G P G++ CG
Sbjct: 1359 SPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 34.3 bits (77), Expect = 0.042
Identities = 42/132 (31%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 21 RPQPWVLGLQGR-GGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGA 79
R P GL GR G GDA G G PGP L A+ PG+ G
Sbjct: 1194 RGAPGFPGLPGRKGAMGDAGPRGPTGIEGFPGPP----------GLPGAI-IPGQT--GN 1240
Query: 80 GQPPATSGGPATSGRSKEPWGHISGCGDPPGAFRGSG-RICQGTSG--ARPCFCRAPGYP 136
PP + G P G P H+ G G+ G + GT+G P APG P
Sbjct: 1241 RGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPPGTAGDMGPPGRLGAPGTP 1300
Query: 137 WMAALCPRRRPG 148
+ PR PG
Sbjct: 1301 GLPG--PRGDPG 1310
Score = 30.8 bits (68), Expect = 0.46
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 28 GLQGRGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSG 87
G G G +G+ G G PGP + PR + L + P G PP G
Sbjct: 614 GPPGYGPQGEPGLQGTQGVPGAPGPPGEAGPRGE---LSVSTPVP-----GPPGPPGPPG 665
Query: 88 GPATSGRSKEPWGHISGCGDP 108
P G P G + CGDP
Sbjct: 666 HPGPQGPPGIP-GSLGKCGDP 685
Score = 28.5 bits (62), Expect = 2.3
Identities = 27/90 (30%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
Query: 20 PRPQPWVLGLQG-RGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEG 78
PR P G G +G +G+ G+ G GP R DP L + + PG
Sbjct: 1305 PRGDPGFQGFPGVKGEKGNPGFLGSIGPPGPIGPKGPPGVRGDPGTL-KIISLPG----- 1358
Query: 79 AGQPPATSGGPATSGRSKEPW--GHISGCG 106
+ PP T G P G P G++ CG
Sbjct: 1359 SPGPPGTPGEPGMQGEPGPPGPPGNLGPCG 1388
>gi|24432011 progestin and adipoQ receptor family member VI isoform
1 [Homo sapiens]
Length = 351
Score = 34.3 bits (77), Expect = 0.042
Identities = 28/77 (36%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 50 PGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATSGGPATSGRSKEP-WGHISGC-GD 107
PGP+ D EPR+ P ++ L LE G A G GR +E G ++ C D
Sbjct: 276 PGPSADEEPRFGPNQVGTHL-----SLEPTG---AEERGHRREGREEEGCLGGLAECERD 327
Query: 108 PPGAFRGSGRICQGTSG 124
GA GSGR +G G
Sbjct: 328 REGALDGSGRSAEGLRG 344
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 34.3 bits (77), Expect = 0.042
Identities = 31/82 (37%), Positives = 34/82 (41%), Gaps = 7/82 (8%)
Query: 28 GLQG-RGGEGDARTCGAGRERGLPGPALDTEPRWDPRRLCEALRAPGRRLEGAGQPPATS 86
GL G G +GDA + G RG PGP P P R A+ PG R G PP
Sbjct: 202 GLPGPTGPKGDAGSRGPMGMRGPPGP---QGPPGSPGR-AGAVGTPGER--GPPGPPGPP 255
Query: 87 GGPATSGRSKEPWGHISGCGDP 108
G P P IS GDP
Sbjct: 256 GPPGPPAPVGPPHARISQHGDP 277
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,247,184
Number of Sequences: 37866
Number of extensions: 632110
Number of successful extensions: 3091
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 299
Number of HSP's that attempted gapping in prelim test: 2705
Number of HSP's gapped (non-prelim): 656
length of query: 152
length of database: 18,247,518
effective HSP length: 93
effective length of query: 59
effective length of database: 14,725,980
effective search space: 868832820
effective search space used: 868832820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.