Guide to the Human Genome
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Name: LOC100289935 Sequence: fasta or formatted (217aa) NCBI GI: 239752237
Description:

PREDICTED: hypothetical protein XP_002348168

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         20           2
 C cysteine            1.8          4           1
 D aspartate           2.8          6           1
 E glutamate           5.5         12           2
 F phenylalanine       0.5          1           1
 G glycine            15.7         34           2
 H histidine           2.8          6           1
 I isoleucine          1.8          4           1
 K lysine              2.3          5           1
 L leucine             4.1          9           1
 M methionine          0.9          2           1
 N asparagine          0.5          1           1
 P proline            11.1         24           2
 Q glutamine           7.4         16           1
 R arginine           13.8         30           2
 S serine              6.5         14           2
 T threonine           5.1         11           1
 V valine              6.5         14           2
 W tryptophan          0.9          2           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348168 
LOC100288980          0.909   PREDICTED: hypothetical protein XP_002343835 
LOC100292402          0.693   PREDICTED: hypothetical protein 
ANKRD33B              0.033   PREDICTED: ankyrin repeat domain 33B 
LOC728767             0.028   PREDICTED: hypothetical protein 
LOC728767             0.028   PREDICTED: hypothetical protein 
LOC100289368          0.028   PREDICTED: hypothetical protein XP_002343360 
BAT2                  0.023   HLA-B associated transcript-2 
LOC100292058          0.021   PREDICTED: hypothetical protein XP_002344766 
LOC100290367          0.021   PREDICTED: hypothetical protein XP_002347417 
LOC100288730          0.021   PREDICTED: hypothetical protein XP_002343287 
JPH2                  0.021   junctophilin 2 isoform 1 
LOC100292062          0.021   PREDICTED: hypothetical protein XP_002346314 
LSR                   0.019   LISCH protein isoform 3 
LSR                   0.019   LISCH protein isoform 2 
LSR                   0.019   LISCH protein isoform 1 
FLJ31945              0.019   PREDICTED: hypothetical protein 
FLJ31945              0.019   PREDICTED: hypothetical protein 
FLJ31945              0.019   PREDICTED: hypothetical protein 
LOC100288496          0.019   PREDICTED: hypothetical protein XP_002342747 
LOC100291976          0.016   PREDICTED: hypothetical protein XP_002345754 
LOC100132983          0.016   PREDICTED: hypothetical protein 
GRK6                  0.016   G protein-coupled receptor kinase 6 isoform B 
BCL9L                 0.016   B-cell CLL/lymphoma 9-like 
LOC100293129          0.016   PREDICTED: hypothetical protein 
LOC389174             0.016   PREDICTED: hypothetical protein 
LOC100291718          0.016   PREDICTED: hypothetical protein XP_002345751 
LOC100290372          0.016   PREDICTED: hypothetical protein XP_002346788 
LOC100287726          0.016   PREDICTED: hypothetical protein 
LOC389174             0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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