Guide to the Human Genome
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Name: LOC100292402 Sequence: fasta or formatted (235aa) NCBI GI: 239757743
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         23           2
 C cysteine            2.1          5           1
 D aspartate           3.0          7           1
 E glutamate           7.7         18           2
 F phenylalanine       0.9          2           1
 G glycine            17.0         40           2
 H histidine           5.5         13           1
 I isoleucine          1.7          4           1
 K lysine              1.7          4           1
 L leucine             5.5         13           2
 M methionine          0.9          2           1
 N asparagine          0.9          2           1
 P proline            10.2         24           2
 Q glutamine           8.9         21           1
 R arginine            9.4         22           2
 S serine              5.1         12           2
 T threonine           2.6          6           1
 V valine              6.4         15           2
 W tryptophan          0.4          1           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289935          0.630   PREDICTED: hypothetical protein XP_002348168 
LOC100288980          0.630   PREDICTED: hypothetical protein XP_002343835 
APC2                  0.043   adenomatosis polyposis coli 2 
LOC100289368          0.026   PREDICTED: hypothetical protein XP_002343360 
HRNR                  0.019   hornerin 
JPH2                  0.019   junctophilin 2 isoform 1 
ANKRD33B              0.019   PREDICTED: ankyrin repeat domain 33B 
LOC100288496          0.019   PREDICTED: hypothetical protein XP_002342747 
SYN1                  0.017   synapsin I isoform Ia 
SYN1                  0.017   synapsin I isoform Ib 
ZNF646                0.017   zinc finger protein 646 
FLJ31945              0.017   PREDICTED: hypothetical protein 
FLJ31945              0.017   PREDICTED: hypothetical protein 
FLJ31945              0.017   PREDICTED: hypothetical protein 
LOC100291976          0.015   PREDICTED: hypothetical protein XP_002345754 
P2RX2                 0.015   purinergic receptor P2X2 isoform H 
P2RX2                 0.015   purinergic receptor P2X2 isoform I 
P2RX2                 0.015   purinergic receptor P2X2 isoform D 
P2RX2                 0.015   purinergic receptor P2X2 isoform A 
P2RX2                 0.015   purinergic receptor P2X2 isoform C 
GRK6                  0.015   G protein-coupled receptor kinase 6 isoform B 
BCL9L                 0.015   B-cell CLL/lymphoma 9-like 
FLG2                  0.015   filaggrin family member 2 
LOC100293136          0.015   PREDICTED: hypothetical protein 
LOC389174             0.015   PREDICTED: hypothetical protein 
LOC100290831          0.015   PREDICTED: hypothetical protein XP_002347799 
LOC389174             0.015   PREDICTED: hypothetical protein 
LOC100287562          0.015   PREDICTED: hypothetical protein XP_002343591 
LOC389174             0.015   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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