Guide to the Human Genome
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Name: SP1 Sequence: fasta or formatted (785aa) NCBI GI: 38372901
Description:

Sp1 transcription factor isoform a

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [778aa] Sp1 transcription factor isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         64           3
 C cysteine            1.4         11           1
 D aspartate           2.3         18           2
 E glutamate           3.1         24           2
 F phenylalanine       1.5         12           2
 G glycine            12.5         98           4
 H histidine           1.9         15           1
 I isoleucine          5.2         41           3
 K lysine              2.5         20           3
 L leucine             7.0         55           2
 M methionine          1.8         14           1
 N asparagine          6.2         49           2
 P proline             5.4         42           1
 Q glutamine          11.3         89           4
 R arginine            2.7         21           2
 S serine             12.2         96           4
 T threonine           8.7         68           5
 V valine              4.7         37           2
 W tryptophan          0.5          4           1
 Y tyrosine            0.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sp1 transcription factor isoform a 
SP1                   0.990   Sp1 transcription factor isoform b 
SP4                   0.303   Sp4 transcription factor 
SP3                   0.296   Sp3 transcription factor isoform 1 
SP3                   0.270   Sp3 transcription factor isoform 2 
SP2                   0.166   Sp2 transcription factor 
SP5                   0.118   Sp5 transcription factor 
SP8                   0.114   Sp8 transcription factor isoform 1 
SP8                   0.114   Sp8 transcription factor isoform 2 
SP9                   0.106   Sp9 transcription factor homolog 
SP7                   0.101   osterix 
SP6                   0.096   Sp6 transcription factor 
KLF13                 0.080   Kruppel-like factor 13 
KLF11                 0.079   Kruppel-like factor 11 
KLF10                 0.077   Kruppel-like factor 10 isoform b 
KLF10                 0.077   Kruppel-like factor 10 isoform a 
KLF9                  0.075   Kruppel-like factor 9 
KLF15                 0.069   Kruppel-like factor 15 
KLF14                 0.068   Kruppel-like factor 14 
KLF16                 0.068   BTE-binding protein 4 
KLF8                  0.065   Kruppel-like factor 8 isoform 1 
KLF6                  0.064   Kruppel-like factor 6 isoform A 
KLF5                  0.064   Kruppel-like factor 5 
KLF1                  0.063   Kruppel-like factor 1 (erythroid) 
KLF4                  0.062   Kruppel-like factor 4 (gut) 
KLF2                  0.061   Kruppel-like factor 
KLF3                  0.060   Kruppel-like factor 3 (basic) 
KLF12                 0.059   Kruppel-like factor 12 
KLF7                  0.059   Kruppel-like factor 7 (ubiquitous) 
KLF17                 0.059   zinc finger protein 393 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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