Guide to the Human Genome
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Name: LOC100290358 Sequence: fasta or formatted (128aa) NCBI GI: 239749065
Description:

PREDICTED: hypothetical protein XP_002346903

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         11           2
 C cysteine            2.3          3           1
 D aspartate           0.8          1           1
 E glutamate           4.7          6           1
 F phenylalanine       0.8          1           1
 G glycine            14.8         19           2
 H histidine           2.3          3           1
 I isoleucine          3.1          4           1
 K lysine              0.8          1           1
 L leucine             7.0          9           1
 M methionine          0.8          1           1
 N asparagine          0.0          0           0
 P proline            16.4         21           4
 Q glutamine           1.6          2           1
 R arginine           15.6         20           3
 S serine             10.9         14           3
 T threonine           3.1          4           1
 V valine              4.7          6           1
 W tryptophan          1.6          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346903 
LOC100294079          1.000   PREDICTED: hypothetical protein 
LOC100291842          0.984   PREDICTED: hypothetical protein XP_002346016 
LOC100291061          0.081   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.081   PREDICTED: hypothetical protein XP_002343855 
LOC100289408          0.069   PREDICTED: hypothetical protein 
LOC100289408          0.069   PREDICTED: hypothetical protein XP_002344217 
COL12A1               0.061   collagen, type XII, alpha 1 short isoform precursor ...
COL12A1               0.061   collagen, type XII, alpha 1 long isoform precursor [...
LOC100127930          0.057   PREDICTED: hypothetical protein 
LOC100289368          0.057   PREDICTED: hypothetical protein XP_002343360 
ZIC5                  0.057   zinc finger protein of the cerebellum 5 
SIM2                  0.053   single-minded homolog 2 long isoform 
LOC645722             0.053   PREDICTED: similar to hCG2037003 
BAT2                  0.049   HLA-B associated transcript-2 
ARID1A                0.049   AT rich interactive domain 1A isoform a 
ARID1A                0.049   AT rich interactive domain 1A isoform b 
COL11A1               0.045   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.045   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.045   alpha 1 type XI collagen isoform A preproprotein [Ho...
RASSF5                0.045   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.045   Ras association (RalGDS/AF-6) domain family 5 isofor...
FLJ22184              0.045   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.045   PREDICTED: hypothetical protein FLJ22184 
LOC100291311          0.045   PREDICTED: hypothetical protein XP_002347439 
FLJ22184              0.045   PREDICTED: hypothetical protein LOC80164 
LOC100289410          0.045   PREDICTED: hypothetical protein XP_002344274 
LOC100293662          0.041   PREDICTED: hypothetical protein 
LOC100289444          0.041   PREDICTED: hypothetical protein 
LOC100289444          0.041   PREDICTED: hypothetical protein XP_002342754 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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