Guide to the Human Genome
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Name: LOC100288226 Sequence: fasta or formatted (154aa) NCBI GI: 239745424
Description:

PREDICTED: hypothetical protein XP_002343463

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         13           2
 C cysteine            3.9          6           2
 D aspartate           0.6          1           1
 E glutamate           1.9          3           1
 F phenylalanine       0.0          0           0
 G glycine             5.2          8           2
 H histidine           3.9          6           1
 I isoleucine          0.0          0           0
 K lysine              3.9          6           2
 L leucine             3.9          6           1
 M methionine          3.2          5           1
 N asparagine          0.6          1           1
 P proline            16.9         26           2
 Q glutamine           5.8          9           2
 R arginine           16.9         26           3
 S serine             12.3         19           2
 T threonine           4.5          7           1
 V valine              2.6          4           1
 W tryptophan          3.2          5           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343463 
BAT2                  0.045   HLA-B associated transcript-2 
LOC643355             0.042   PREDICTED: hypothetical protein 
LOC643355             0.042   PREDICTED: hypothetical protein 
CPEB3                 0.038   cytoplasmic polyadenylation element binding protein ...
LOC100293644          0.038   PREDICTED: hypothetical protein 
LOC100287563          0.038   PREDICTED: hypothetical protein 
LOC100287563          0.038   PREDICTED: hypothetical protein XP_002343733 
LOC100132891          0.035   PREDICTED: hypothetical protein 
LOC100132891          0.035   PREDICTED: hypothetical protein 
LOC100132891          0.035   PREDICTED: hypothetical protein 
EMID2                 0.035   EMI domain containing 2 
LOC729580             0.032   PREDICTED: hypothetical protein 
LOC729580             0.032   PREDICTED: hypothetical protein 
LOC729580             0.032   PREDICTED: hypothetical protein 
LOC100289368          0.032   PREDICTED: hypothetical protein XP_002343360 
SRRM2                 0.032   splicing coactivator subunit SRm300 
KDM6B                 0.029   lysine (K)-specific demethylase 6B 
RAPH1                 0.029   Ras association and pleckstrin homology domains 1 is...
KCNK4                 0.029   TRAAK 
LOC100291071          0.029   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          0.029   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.029   PREDICTED: hypothetical protein 
VASP                  0.026   vasodilator-stimulated phosphoprotein 
LOC388906             0.026   PREDICTED: hypothetical protein 
LOC388906             0.026   PREDICTED: hypothetical protein 
LOC100290812          0.026   PREDICTED: hypothetical protein XP_002347678 
FAM132B               0.026   PREDICTED: family with sequence similarity 132, mem...
LOC388906             0.026   PREDICTED: hypothetical protein 
LOC100288205          0.026   PREDICTED: hypothetical protein XP_002343496 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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