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Search of human proteins with 239744421
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744421 PREDICTED: hypothetical protein [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744421 PREDICTED: hypothetical protein [Homo sapiens] 527 e-150
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 54 1e-07
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 48 7e-06
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 46 3e-05
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 46 4e-05
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 46 4e-05
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 46 4e-05
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 45 6e-05
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 45 6e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 44 1e-04
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 43 2e-04
gi|48762934 alpha 2 type I collagen [Homo sapiens] 42 4e-04
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 42 4e-04
gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [H... 42 4e-04
gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Ho... 42 4e-04
gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Hom... 42 4e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 42 5e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 42 5e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 42 5e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 42 5e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 42 5e-04
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 42 7e-04
gi|239753715 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239748261 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239742162 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens] 39 0.003
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 39 0.003
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.004
gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo ... 39 0.004
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 39 0.004
>gi|239744421 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 527 bits (1358), Expect = e-150
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MSLWVCRFKSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRG 60
MSLWVCRFKSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRG
Sbjct: 1 MSLWVCRFKSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRG 60
Query: 61 ARGGARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ 120
ARGGARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ
Sbjct: 61 ARGGARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ 120
Query: 121 SPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPH 180
SPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPH
Sbjct: 121 SPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPH 180
Query: 181 SRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERV 240
SRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERV
Sbjct: 181 SRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERV 240
Query: 241 RLVHPPPAPGAP 252
RLVHPPPAPGAP
Sbjct: 241 RLVHPPPAPGAP 252
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 53.9 bits (128), Expect = 1e-07
Identities = 64/238 (26%), Positives = 81/238 (34%), Gaps = 48/238 (20%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
P GA G + +P + A G PG P G GARG + G P
Sbjct: 378 PAGAAGPAGNPGADGQPGAKGANGAPGIAGAP-----------GFPGARGPSGPQGPGGP 426
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG----QSPPELGSDL 129
G ++ +P +G +GA GE G Q PP +
Sbjct: 427 PGPKGNSGEPGAPGSKGDTGAK--------------------GEPGPVGVQGPPGPAGEE 466
Query: 130 GPQSRRRPPGVTSSLPSLDSLG-------PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR 182
G + R PG T G PG GVA AG R PG A P+GSP
Sbjct: 467 GKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEA 526
Query: 183 ALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRH----PAAPQGTQKGLGEDAF 236
G L G+ +TG GS + PGP + P P G + G F
Sbjct: 527 GRPGEAG--LPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGF 582
Score = 45.1 bits (105), Expect = 6e-05
Identities = 66/251 (26%), Positives = 82/251 (32%), Gaps = 51/251 (20%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARG-----GARAV 68
PGA S G ++ P +R A G PGP GD R G +GA G G R +
Sbjct: 715 PGAPGSQGAPGLQGMPGERGAAGLPGPKGD---------RGDAGPKGADGSPGKDGVRGL 765
Query: 69 SAG-NPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGS 127
+ P G + D P G +G + G+ G+RG+ P
Sbjct: 766 TGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAP--------------GDRGEPGPP--- 808
Query: 128 DLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRV 187
GP PPG PG G G PG A P G P
Sbjct: 809 --GPAGFAGPPGADGQ--------PGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGA 858
Query: 188 VG-DHLLGSWLITGKDGSTQGLQQLWSPGPRIR-------HPAAPQGTQKGLGEDAFEER 239
G GS G G ++ PGP PA +G + GE R
Sbjct: 859 PGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGR 918
Query: 240 VRLVHPPPAPG 250
V PP PG
Sbjct: 919 PGEVGPPGPPG 929
Score = 43.5 bits (101), Expect = 2e-04
Identities = 70/261 (26%), Positives = 91/261 (34%), Gaps = 53/261 (20%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVS 69
K PPG DG P R G G PG P+ + G G + G R V
Sbjct: 552 KTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPG---------PKGAAGEPG-KAGERGVP 601
Query: 70 AGNPRGVGRSARDPQT--KKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPE--- 124
G P VG + +D + + P G +G A GERG+ P
Sbjct: 602 -GPPGAVGPAGKDGEAGAQGPPGPAGPA--------------------GERGEQGPAGSP 640
Query: 125 ----LGSDLGPQSRRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSP 179
L GP PG L + GP G G G + PG A P+G+
Sbjct: 641 GFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGAN 700
Query: 180 HSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWS-------PGPR-IRHPAAPQGTQKGL 231
+ GD G+ G G+ GLQ + PGP+ R A P+G
Sbjct: 701 GAPGNDGAKGD--AGAPGAPGSQGAP-GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSP 757
Query: 232 GEDAFEERVRLVHPPPAPGAP 252
G+D + PP GAP
Sbjct: 758 GKDGVRGLTGPIGPPGPAGAP 778
Score = 40.0 bits (92), Expect = 0.002
Identities = 68/282 (24%), Positives = 86/282 (30%), Gaps = 52/282 (18%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG V G +R A G PGP P P G G+RG A P+
Sbjct: 451 PGPVGVQGPPGPAGEEGKRGARGEPGPTGLP-----GPPGERGGPGSRGFPGADGVAGPK 505
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWG--GERGQSPPELGSDLGPQ 132
G P P+G G A G + L A+ + G G G++ P G
Sbjct: 506 GPAGERGSPGPAGPKGSPGEAGRPG-EAGLPGAKGLTGSPGSPGPDGKTGPP--GPAGQD 562
Query: 133 SRRRPPGVTSSLPSLDSLG----------------------PGCTGVAQRTRHAGGRHRP 170
R PPG + +G PG G A + AG + P
Sbjct: 563 GRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPP 622
Query: 171 GGAAPQGSPHSRALCRVVGDHLL----GSWLITGKDGSTQGLQQLWSPGPRIRH------ 220
G A P G + G L G GK G L +PGP
Sbjct: 623 GPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFP 682
Query: 221 ----------PAAPQGTQKGLGEDAFEERVRLVHPPPAPGAP 252
PA P+G G D + P + GAP
Sbjct: 683 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAP 724
Score = 36.2 bits (82), Expect = 0.028
Identities = 46/167 (27%), Positives = 53/167 (31%), Gaps = 22/167 (13%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
P GA + G P G PG QP G +G G A A P
Sbjct: 792 PTGARGAPGDRGEPGPPGPAGFAGPPGADGQP-----------GAKGEPGDAGAKGDAGP 840
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQS 133
G A P G GA + GS + + G G+ P GP
Sbjct: 841 PGPAGPAGPPGPIGNVGAPGAKGARGSA-----GPPGATGFPGAAGRVGPP-----GPSG 890
Query: 134 RRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSP 179
PPG GP G TG A R G PG A +GSP
Sbjct: 891 NAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSP 937
Score = 33.1 bits (74), Expect = 0.24
Identities = 63/229 (27%), Positives = 78/229 (34%), Gaps = 40/229 (17%)
Query: 12 RFPPGAVSSDGLGAVETRPAQREAGGGPG-------PGDQPLLLCSVPRRSLGVRGARGG 64
R PPG +G +P + G PG PG L R G+ GA+G
Sbjct: 220 RGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGD 279
Query: 65 A-RAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPP 123
A A G P G + P PRG G G+ AR G PP
Sbjct: 280 AGPAGPKGEPGSPGENGA-PGQMGPRGLPGERGRPGAP-GPAGARGND---GATGAAGPP 334
Query: 124 ELGSDLGPQSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAA-PQGS 178
GP PPG ++ + GP G G Q R G P GAA P G+
Sbjct: 335 ------GPTGPAGPPGFPGAVGAKGEAGPQGPRGSEG-PQGVRGEPGPPGPAGAAGPAGN 387
Query: 179 PHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQG 226
P G+ G G+ +PG P R P+ PQG
Sbjct: 388 P--------------GADGQPGAKGANGAPGIAGAPGFPGARGPSGPQG 422
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 48.1 bits (113), Expect = 7e-06
Identities = 69/245 (28%), Positives = 85/245 (34%), Gaps = 43/245 (17%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARGGARAVS 69
KR PPG S+G E +R G PGP G+Q C + G RG G V
Sbjct: 1405 KRGPPGFKGSEGYLGEEGIAGER---GAPGPVGEQGTKGCYGTKGPKGNRGLNGQEGEVG 1461
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL 129
G+ D +G G S+GS G+RG D
Sbjct: 1462 ENGIDGLNGEQGDNGLPGRKGEKGDEGSQGSP--------------GKRGTP-----GDR 1502
Query: 130 GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVG 189
G + R PG P +DS G TG+ G R PG P G+P SR G
Sbjct: 1503 GAKGLRGDPGA----PGVDSSIEGPTGLKGERGRQGRRGWPG---PPGTPGSRRKTAAHG 1555
Query: 190 DH----LLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLVHP 245
G+ I G DG L GP R A +G + G+G
Sbjct: 1556 RRGHTGPQGTAGIPGPDGLEGSLGLKGPQGP--RGEAGVKGEKGGVGSKG-------PQG 1606
Query: 246 PPAPG 250
PP PG
Sbjct: 1607 PPGPG 1611
Score = 28.1 bits (61), Expect = 7.6
Identities = 44/176 (25%), Positives = 58/176 (32%), Gaps = 14/176 (7%)
Query: 14 PPGAVSSDGLGAVETRPAQ---REAGGGPGP----GDQPLLLCSVPRRSLGVRGARGGAR 66
PPG S A R + G PGP G L PR GV+G +GG
Sbjct: 1541 PPGTPGSRRKTAAHGRRGHTGPQGTAGIPGPDGLEGSLGLKGPQGPRGEAGVKGEKGGVG 1600
Query: 67 AVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELG 126
+ P G G A + +G G G + + R G + P G
Sbjct: 1601 SKGPQGPPGPGGEAGNQGRLGSQGNKGEPGDLGEKGAVGFPGPR----GLQGNDGSPGYG 1656
Query: 127 S--DLGPQSRRRPPGVTSSLPSL-DSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSP 179
S G + + PG + + D GPG TG+ PG G P
Sbjct: 1657 SVGRKGAKGQEGFPGESGPKGEIGDPGGPGETGLKGARGKMISAGLPGEMGSPGEP 1712
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 46.2 bits (108), Expect = 3e-05
Identities = 60/227 (26%), Positives = 76/227 (33%), Gaps = 38/227 (16%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAV 68
K + PG +GL P G PG +P L + R G GARG
Sbjct: 275 KGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGAR--GNDGARGSDGQP 332
Query: 69 SAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSD 128
P G P K G +G+ S G+ G+RG+ P+
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAP--------------GQRGEPGPQ--GH 376
Query: 129 LGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVV 188
G Q PPG+ S +GP G+ G R PG A G+P R
Sbjct: 377 AGAQGPPGPPGINGSPGGKGEMGP--AGIPGAPGLMGARGPPGPAGANGAPGLR------ 428
Query: 189 GDHLLGSWLITGKDGSTQGLQQLWSPGPR-IRHPAAPQGTQKGLGED 234
G GK+G+ PGPR R A G GED
Sbjct: 429 -----GGAGEPGKNGAK------GEPGPRGERGEAGIPGVPGAKGED 464
Score = 41.6 bits (96), Expect = 7e-04
Identities = 59/226 (26%), Positives = 76/226 (33%), Gaps = 24/226 (10%)
Query: 16 GAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRS--LGVRGARGGARAVSAGNP 73
GA G+ P +R G PGP P P ++ G +G RG G P
Sbjct: 783 GAPGLPGIAGPRGSPGERGETGPPGPAGFP----GAPGQNGEPGGKGERGAPGEKGEGGP 838
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG-QSPPELGSDLGPQ 132
GV P G G GS A + G RG PP + GP
Sbjct: 839 PGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG-----FPGARGLPGPPGSNGNPGPP 893
Query: 133 SRRRPPGVTSSLPSLDSLG----PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVV 188
PG + G PG +G G + PG P G+P + +
Sbjct: 894 GPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGIT 953
Query: 189 GDH-LLGSWLITGKDGS--TQGLQ-QLWSPGPR----IRHPAAPQG 226
G L G + G GS QG++ + PG R P PQG
Sbjct: 954 GARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQG 999
Score = 39.7 bits (91), Expect = 0.003
Identities = 46/167 (27%), Positives = 56/167 (33%), Gaps = 18/167 (10%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PGA DG + P + A G PG G++ P G+ G +G A A P
Sbjct: 458 PGAKGEDGK---DGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPGP 514
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQS 133
G +A +P G G GS GG P G
Sbjct: 515 AGPRGAAGEPGRDGVPGGPGMRGMPGSP-------------GGPGSDGKPGPPGSQGESG 561
Query: 134 RRRPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSP 179
R PPG + +G PG G G R PGG PQG P
Sbjct: 562 RPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPP 608
Score = 39.7 bits (91), Expect = 0.003
Identities = 67/255 (26%), Positives = 83/255 (32%), Gaps = 40/255 (15%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAV 68
K +R PG + G P + G PGP P S G G G A
Sbjct: 860 KGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPG--------PSGSPGKDGPPGPAGNT 911
Query: 69 SAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG-QSPPELGS 127
A GV D +G GA G+ L A + G RG PP +
Sbjct: 912 GAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGPLGIAGIT-----GARGLAGPPGMP- 965
Query: 128 DLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRV 187
GP+ P GV +S PG G++ G + PG A G P
Sbjct: 966 --GPRGSPGPQGVKG-----ESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGR------ 1012
Query: 188 VGDHLLGSWLITGKDGSTQG---LQQLWSPG-------PRIRHPAAPQGTQKGLGEDAFE 237
D GS + G+DGS G + SPG P P P G GE
Sbjct: 1013 --DGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPA 1070
Query: 238 ERVRLVHPPPAPGAP 252
P + GAP
Sbjct: 1071 GPAGAPGPAGSRGAP 1085
Score = 38.5 bits (88), Expect = 0.006
Identities = 60/255 (23%), Positives = 75/255 (29%), Gaps = 70/255 (27%)
Query: 14 PPGAVSSDGLGAVETRPAQRE---AGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSA 70
P GA G V P R + GGPG +P G G++G +
Sbjct: 517 PRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKP-----------GPPGSQGESGRPGP 565
Query: 71 GNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLG 130
P G P+G GA G + GG Q PP + G
Sbjct: 566 PGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP----------GGPGPQGPPGKNGETG 615
Query: 131 PQSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCR 186
PQ PPG T GP G G+ G +PG P+G
Sbjct: 616 PQG---PPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGD-------- 664
Query: 187 VVGDHLLGSWLITGKDGSTQGLQQLWSPG----------PRIRHPAAPQGTQKGLGEDAF 236
G G+ G +PG P +R A P G + G G
Sbjct: 665 ------------AGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKG---- 708
Query: 237 EERVRLVHPPPAPGA 251
PP PGA
Sbjct: 709 -----AAGPPGPPGA 718
Score = 38.1 bits (87), Expect = 0.007
Identities = 67/251 (26%), Positives = 84/251 (33%), Gaps = 34/251 (13%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARGGARAVS--- 69
PPGA + GL + P +R G PGP GD+ G G RG +
Sbjct: 715 PPGAAGTPGLQGM---PGERGGLGSPGPKGDKGEPGGPGADGVPGKDGPRGPTGPIGPPG 771
Query: 70 -AGNP--RGVGRSARDPQTKKPRGRSGAAVSEG--SQVWLQHARLRSCLWGGERGQSPPE 124
AG P +G G + P PRG G G A ++ GG+ + P
Sbjct: 772 PAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPG 831
Query: 125 LGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRAL 184
+ GP PPG G G G G R PGG G P +R L
Sbjct: 832 EKGEGGPPGVAGPPG-----------GSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGL 880
Query: 185 CRVVGDH----LLGSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQGTQKGLGEDAFEER 239
G + G GKDG +PG P + P G G +
Sbjct: 881 PGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQ-- 938
Query: 240 VRLVHPPPAPG 250
PP APG
Sbjct: 939 ----GPPGAPG 945
Score = 37.4 bits (85), Expect = 0.013
Identities = 66/262 (25%), Positives = 89/262 (33%), Gaps = 31/262 (11%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGP----GDQPLLLCSVPRRSLGVRGARG--GARA 67
PPGA G+ + G PGP G Q + S + G+ G RG G +
Sbjct: 940 PPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQG 999
Query: 68 VSA-----------GNPRGVGRSARD--PQTKKPRGRSGAAVSEGSQVWL-QHARLRSCL 113
+ GNP G RD P K RG +G+ + G+ +
Sbjct: 1000 LPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAG 1059
Query: 114 WGGERGQSPPELGSDL-GPQSRRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPG 171
G+RG+S P + GP R PG G G G+ G PG
Sbjct: 1060 KSGDRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPG 1119
Query: 172 GAAPQGSPHSRALCRVVGDH-LLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKG 230
P G + G +G GKDG++ PGP P P+G +
Sbjct: 1120 SPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSG------HPGPI--GPPGPRGNRGE 1171
Query: 231 LGEDAFEERVRLVHPPPAPGAP 252
G + PP PGAP
Sbjct: 1172 RGSEGSPGHPGQPGPPGPPGAP 1193
Score = 35.8 bits (81), Expect = 0.037
Identities = 46/174 (26%), Positives = 58/174 (33%), Gaps = 43/174 (24%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
P GA + GL P + A G PGP RG RG A G P
Sbjct: 418 PAGANGAPGLRGGAGEPGKNGAKGEPGP-----------------RGERG--EAGIPGVP 458
Query: 74 RGVGRSARDPQTKKP--RGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPE-LGSDLG 130
G +D +P G GAA G+ G RG + P + + G
Sbjct: 459 GAKGEDGKDGSPGEPGANGLPGAAGERGAP--------------GFRGPAGPNGIPGEKG 504
Query: 131 PQSRRRPPGV-----TSSLPSLDSL--GPGCTGVAQRTRHAGGRHRPGGAAPQG 177
P R PG + P D + GPG G+ G +PG QG
Sbjct: 505 PAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQG 558
Score = 35.0 bits (79), Expect = 0.062
Identities = 64/245 (26%), Positives = 77/245 (31%), Gaps = 35/245 (14%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG+ S G P Q G PGP + S P G G G P
Sbjct: 191 PGSPGSPGYQGPPGEPGQAGPSGPPGP--PGAIGPSGPAGKDGESGRPGRPGERGLPGPP 248
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSR 134
G+ A P +G G G + L+ GE G P E G+ GP
Sbjct: 249 GIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLK-----GENG-LPGENGAP-GPMGP 301
Query: 135 RRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVGDHLLG 194
R PG PG G A + G R G P G P + G G
Sbjct: 302 RGAPGERGR--------PGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPG--AKG 351
Query: 195 SWLITGKDGSTQGLQQLWSPGPR----IRHPAAP---QGTQKGLGEDAFEERVRLVHPPP 247
G GS Q PGP+ + P P G+ G GE + P
Sbjct: 352 EVGPAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGE---------MGPAG 402
Query: 248 APGAP 252
PGAP
Sbjct: 403 IPGAP 407
Score = 30.4 bits (67), Expect = 1.5
Identities = 41/150 (27%), Positives = 49/150 (32%), Gaps = 47/150 (31%)
Query: 30 PAQREAGGGPGPGDQPLLLCSV----PRRSLGVRGARGGARAVSAGNPRGVGRSARDPQT 85
P A G PGP Q + S PR +G G G + ++G+P +G
Sbjct: 1112 PGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPG--KDGTSGHPGPIGPPG----- 1164
Query: 86 KKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSRRRPPGVTSSLP 145
PRG G SEGS G GQ P PPG
Sbjct: 1165 --PRGNRGERGSEGSP--------------GHPGQPGPP-----------GPPGAP---- 1193
Query: 146 SLDSLGPGCTGVAQRTRHAGGRHRPGGAAP 175
GP C GV G + GG AP
Sbjct: 1194 -----GPCCGGVGAAAIAGIGGEKAGGFAP 1218
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 45.8 bits (107), Expect = 4e-05
Identities = 70/267 (26%), Positives = 88/267 (32%), Gaps = 47/267 (17%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPGA G + P G PGP +P P GV G +G P
Sbjct: 1304 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP-----GPAGQDGVGGDKGEDGDPGQPGP 1358
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG-------QSPPELG 126
G A P RG GAA +EG Q GE+G + PP
Sbjct: 1359 PGPSGEAGPPGPPGKRGPPGAAGAEGRQ--------------GEKGAKGEAGAEGPPGKT 1404
Query: 127 SDLGPQSRRRPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR--- 182
+GPQ PG +G G G A + G PG +G P S+
Sbjct: 1405 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEK 1464
Query: 183 ---ALCRVV---------GDHLL----GSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQ 225
L ++ GD L GS G G L PG P + P P+
Sbjct: 1465 GHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1524
Query: 226 GTQKGLGEDAFEERVRLVHPPPAPGAP 252
G + G + L PP +PG P
Sbjct: 1525 GNKGSTGPAGQKGDSGLPGPPGSPGPP 1551
Score = 35.4 bits (80), Expect = 0.048
Identities = 67/243 (27%), Positives = 82/243 (33%), Gaps = 52/243 (21%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVS 69
KR PGA G+ R G PG PGD+ P+ G G G
Sbjct: 590 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 649
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL 129
PRG+ A PRG GA G G G PP ++
Sbjct: 650 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGM--------------AGVDG--PPGPKGNM 693
Query: 130 GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVG 189
GPQ PPG + PG G+ G PG PQG P L G
Sbjct: 694 GPQGEPGPPGQQGN--------PGPQGLPGPQGPIG---PPGEKGPQGKPGLAGLPGADG 742
Query: 190 --DHLLGSWLITGKDGSTQGLQQLWSPGPR--IRHPAAPQGTQ-----KGL-------GE 233
H GK+G + L PGP+ I +P P+G + +GL GE
Sbjct: 743 PPGH-------PGKEGQSGEKGALGPPGPQGPIGYP-GPRGVKGADGVRGLKGSKGEKGE 794
Query: 234 DAF 236
D F
Sbjct: 795 DGF 797
Score = 35.4 bits (80), Expect = 0.048
Identities = 62/256 (24%), Positives = 79/256 (30%), Gaps = 69/256 (26%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAV 68
+ +R P G S G +P + GG GP P G RG +G V
Sbjct: 891 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP-----------GERGPQGPQGPV 939
Query: 69 SAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG----QSPPE 124
P+G P G+ G G + GE G PP
Sbjct: 940 GFPGPKG---------PPGPPGKDGLPGHPGQR--------------GETGFQGKTGPPG 976
Query: 125 LGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRAL 184
G +GPQ P G T + GP PG QG P +
Sbjct: 977 PGGVVGPQG---PTGETGPIGERGHPGP-----------------PGPPGEQGLPGAAGK 1016
Query: 185 CRVVGDHLLGSWLITGKDGSTQGLQ----QLWSPG----PRIRHPAAPQGTQKGLGEDAF 236
GD G I+GKDG GL+ + PG P ++ PQG +G
Sbjct: 1017 EGAKGDP--GPQGISGKDGPA-GLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1073
Query: 237 EERVRLVHPPPAPGAP 252
P PG P
Sbjct: 1074 RGSAGTAGPIGLPGRP 1089
Score = 35.0 bits (79), Expect = 0.062
Identities = 56/247 (22%), Positives = 78/247 (31%), Gaps = 36/247 (14%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPG-------------PGDQPLLLCSVPRRSLG 57
KR PPGA ++G + + A G PG PG + L P G
Sbjct: 1373 KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQG 1432
Query: 58 VRGARGGARAVSAGNPRGVGRSARDPQTKKPRGRSG--AAVSEGSQVWLQHARLRSCLWG 115
+ GA G P G+ DP +K +G G + + + R G
Sbjct: 1433 LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQG 1492
Query: 116 GERGQSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAP 175
+ + GP PPG+ P G TG A + +G PG P
Sbjct: 1493 SPGAKGDGGIPGPAGPLGPPGPPGLPG--PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP 1550
Query: 176 QGS--------------PHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHP 221
G H+ + D++L DG + L S I H
Sbjct: 1551 PGEVIQPLPILSSKKTRRHTEGMQADADDNILDY-----SDGMEEIFGSLNSLKQDIEHM 1605
Query: 222 AAPQGTQ 228
P GTQ
Sbjct: 1606 KFPMGTQ 1612
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 45.8 bits (107), Expect = 4e-05
Identities = 70/267 (26%), Positives = 88/267 (32%), Gaps = 47/267 (17%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPGA G + P G PGP +P P GV G +G P
Sbjct: 1253 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP-----GPAGQDGVGGDKGEDGDPGQPGP 1307
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG-------QSPPELG 126
G A P RG GAA +EG Q GE+G + PP
Sbjct: 1308 PGPSGEAGPPGPPGKRGPPGAAGAEGRQ--------------GEKGAKGEAGAEGPPGKT 1353
Query: 127 SDLGPQSRRRPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR--- 182
+GPQ PG +G G G A + G PG +G P S+
Sbjct: 1354 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEK 1413
Query: 183 ---ALCRVV---------GDHLL----GSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQ 225
L ++ GD L GS G G L PG P + P P+
Sbjct: 1414 GHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1473
Query: 226 GTQKGLGEDAFEERVRLVHPPPAPGAP 252
G + G + L PP +PG P
Sbjct: 1474 GNKGSTGPAGQKGDSGLPGPPGSPGPP 1500
Score = 35.4 bits (80), Expect = 0.048
Identities = 67/243 (27%), Positives = 82/243 (33%), Gaps = 52/243 (21%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVS 69
KR PGA G+ R G PG PGD+ P+ G G G
Sbjct: 539 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 598
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL 129
PRG+ A PRG GA G G G PP ++
Sbjct: 599 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGM--------------AGVDG--PPGPKGNM 642
Query: 130 GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVG 189
GPQ PPG + PG G+ G PG PQG P L G
Sbjct: 643 GPQGEPGPPGQQGN--------PGPQGLPGPQGPIG---PPGEKGPQGKPGLAGLPGADG 691
Query: 190 --DHLLGSWLITGKDGSTQGLQQLWSPGPR--IRHPAAPQGTQ-----KGL-------GE 233
H GK+G + L PGP+ I +P P+G + +GL GE
Sbjct: 692 PPGH-------PGKEGQSGEKGALGPPGPQGPIGYP-GPRGVKGADGVRGLKGSKGEKGE 743
Query: 234 DAF 236
D F
Sbjct: 744 DGF 746
Score = 35.4 bits (80), Expect = 0.048
Identities = 62/256 (24%), Positives = 79/256 (30%), Gaps = 69/256 (26%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAV 68
+ +R P G S G +P + GG GP P G RG +G V
Sbjct: 840 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP-----------GERGPQGPQGPV 888
Query: 69 SAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG----QSPPE 124
P+G P G+ G G + GE G PP
Sbjct: 889 GFPGPKG---------PPGPPGKDGLPGHPGQR--------------GETGFQGKTGPPG 925
Query: 125 LGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRAL 184
G +GPQ P G T + GP PG QG P +
Sbjct: 926 PGGVVGPQG---PTGETGPIGERGHPGP-----------------PGPPGEQGLPGAAGK 965
Query: 185 CRVVGDHLLGSWLITGKDGSTQGLQ----QLWSPG----PRIRHPAAPQGTQKGLGEDAF 236
GD G I+GKDG GL+ + PG P ++ PQG +G
Sbjct: 966 EGAKGDP--GPQGISGKDGPA-GLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1022
Query: 237 EERVRLVHPPPAPGAP 252
P PG P
Sbjct: 1023 RGSAGTAGPIGLPGRP 1038
Score = 35.0 bits (79), Expect = 0.062
Identities = 56/247 (22%), Positives = 78/247 (31%), Gaps = 36/247 (14%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPG-------------PGDQPLLLCSVPRRSLG 57
KR PPGA ++G + + A G PG PG + L P G
Sbjct: 1322 KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQG 1381
Query: 58 VRGARGGARAVSAGNPRGVGRSARDPQTKKPRGRSG--AAVSEGSQVWLQHARLRSCLWG 115
+ GA G P G+ DP +K +G G + + + R G
Sbjct: 1382 LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQG 1441
Query: 116 GERGQSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAP 175
+ + GP PPG+ P G TG A + +G PG P
Sbjct: 1442 SPGAKGDGGIPGPAGPLGPPGPPGLPG--PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP 1499
Query: 176 QGS--------------PHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHP 221
G H+ + D++L DG + L S I H
Sbjct: 1500 PGEVIQPLPILSSKKTRRHTEGMQADADDNILDY-----SDGMEEIFGSLNSLKQDIEHM 1554
Query: 222 AAPQGTQ 228
P GTQ
Sbjct: 1555 KFPMGTQ 1561
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 45.8 bits (107), Expect = 4e-05
Identities = 70/267 (26%), Positives = 88/267 (32%), Gaps = 47/267 (17%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPGA G + P G PGP +P P GV G +G P
Sbjct: 1292 PPGAKGPPGDDGPKGNPGPVGFPGDPGPPGEP-----GPAGQDGVGGDKGEDGDPGQPGP 1346
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG-------QSPPELG 126
G A P RG GAA +EG Q GE+G + PP
Sbjct: 1347 PGPSGEAGPPGPPGKRGPPGAAGAEGRQ--------------GEKGAKGEAGAEGPPGKT 1392
Query: 127 SDLGPQSRRRPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR--- 182
+GPQ PG +G G G A + G PG +G P S+
Sbjct: 1393 GPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEK 1452
Query: 183 ---ALCRVV---------GDHLL----GSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQ 225
L ++ GD L GS G G L PG P + P P+
Sbjct: 1453 GHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGPLGPPGPPGLPGPQGPK 1512
Query: 226 GTQKGLGEDAFEERVRLVHPPPAPGAP 252
G + G + L PP +PG P
Sbjct: 1513 GNKGSTGPAGQKGDSGLPGPPGSPGPP 1539
Score = 35.4 bits (80), Expect = 0.048
Identities = 67/243 (27%), Positives = 82/243 (33%), Gaps = 52/243 (21%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVS 69
KR PGA G+ R G PG PGD+ P+ G G G
Sbjct: 578 KRGRPGADGGRGMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDG 637
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL 129
PRG+ A PRG GA G G G PP ++
Sbjct: 638 EIGPRGLPGEAGPRGLLGPRGTPGAPGQPGM--------------AGVDG--PPGPKGNM 681
Query: 130 GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVG 189
GPQ PPG + PG G+ G PG PQG P L G
Sbjct: 682 GPQGEPGPPGQQGN--------PGPQGLPGPQGPIG---PPGEKGPQGKPGLAGLPGADG 730
Query: 190 --DHLLGSWLITGKDGSTQGLQQLWSPGPR--IRHPAAPQGTQ-----KGL-------GE 233
H GK+G + L PGP+ I +P P+G + +GL GE
Sbjct: 731 PPGH-------PGKEGQSGEKGALGPPGPQGPIGYP-GPRGVKGADGVRGLKGSKGEKGE 782
Query: 234 DAF 236
D F
Sbjct: 783 DGF 785
Score = 35.4 bits (80), Expect = 0.048
Identities = 62/256 (24%), Positives = 79/256 (30%), Gaps = 69/256 (26%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAV 68
+ +R P G S G +P + GG GP P G RG +G V
Sbjct: 879 RGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPPGPP-----------GERGPQGPQGPV 927
Query: 69 SAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG----QSPPE 124
P+G P G+ G G + GE G PP
Sbjct: 928 GFPGPKG---------PPGPPGKDGLPGHPGQR--------------GETGFQGKTGPPG 964
Query: 125 LGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRAL 184
G +GPQ P G T + GP PG QG P +
Sbjct: 965 PGGVVGPQG---PTGETGPIGERGHPGP-----------------PGPPGEQGLPGAAGK 1004
Query: 185 CRVVGDHLLGSWLITGKDGSTQGLQ----QLWSPG----PRIRHPAAPQGTQKGLGEDAF 236
GD G I+GKDG GL+ + PG P ++ PQG +G
Sbjct: 1005 EGAKGDP--GPQGISGKDGPA-GLRGFPGERGLPGAQGAPGLKGGEGPQGPPGPVGSPGE 1061
Query: 237 EERVRLVHPPPAPGAP 252
P PG P
Sbjct: 1062 RGSAGTAGPIGLPGRP 1077
Score = 35.0 bits (79), Expect = 0.062
Identities = 56/247 (22%), Positives = 78/247 (31%), Gaps = 36/247 (14%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPG-------------PGDQPLLLCSVPRRSLG 57
KR PPGA ++G + + A G PG PG + L P G
Sbjct: 1361 KRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQG 1420
Query: 58 VRGARGGARAVSAGNPRGVGRSARDPQTKKPRGRSG--AAVSEGSQVWLQHARLRSCLWG 115
+ GA G P G+ DP +K +G G + + + R G
Sbjct: 1421 LPGAAGQDGPPGPMGPPGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQG 1480
Query: 116 GERGQSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAP 175
+ + GP PPG+ P G TG A + +G PG P
Sbjct: 1481 SPGAKGDGGIPGPAGPLGPPGPPGLPG--PQGPKGNKGSTGPAGQKGDSGLPGPPGSPGP 1538
Query: 176 QGS--------------PHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHP 221
G H+ + D++L DG + L S I H
Sbjct: 1539 PGEVIQPLPILSSKKTRRHTEGMQADADDNILDY-----SDGMEEIFGSLNSLKQDIEHM 1593
Query: 222 AAPQGTQ 228
P GTQ
Sbjct: 1594 KFPMGTQ 1600
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 45.1 bits (105), Expect = 6e-05
Identities = 47/170 (27%), Positives = 55/170 (32%), Gaps = 25/170 (14%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSA 70
K PPG GL + + G PGP +P G G G A
Sbjct: 670 KEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEP-----------GKAGEPGLPGPEGA 718
Query: 71 GNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLG 130
P G D PRG SGA G + G+ G + P+ G
Sbjct: 719 RGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGK--------DGDTGPTGPQ-----G 765
Query: 131 PQSRRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSP 179
PQ R PPG S S GP G G G PG P+G P
Sbjct: 766 PQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPP 815
Score = 38.5 bits (88), Expect = 0.006
Identities = 67/250 (26%), Positives = 83/250 (33%), Gaps = 33/250 (13%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
PPGA +G A G PG PG S P S+G G RG
Sbjct: 381 PPGAKGQEGAHGAPG------AAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERG 434
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG-QSPPELGSDLGP 131
+G P PRG GA G + GE G + P L LG
Sbjct: 435 EKGAAGEEGSPGPVGPRGDPGAPGLPGPPGKGKD---------GEPGLRGSPGLPGPLGT 485
Query: 132 QSRRRPPGVTSSLPSLDSLG------PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALC 185
+ R PG+ S S G PG +G G R PG PQG L
Sbjct: 486 KGDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRDGLS 545
Query: 186 RVV--GD-HLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRL 242
++ GD +LL + GL L PG + +G G + E +
Sbjct: 546 SLLSPGDINLLAKDVCNDCPPGPPGLPGL--PGFK-----GDKGVPGKPGREGTEGKKGE 598
Query: 243 VHPPPAPGAP 252
PP PG P
Sbjct: 599 AGPPGLPGPP 608
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 45.1 bits (105), Expect = 6e-05
Identities = 47/170 (27%), Positives = 55/170 (32%), Gaps = 25/170 (14%)
Query: 11 KRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSA 70
K PPG GL + + G PGP +P G G G A
Sbjct: 1223 KEGPPGPQGPSGLPGIPGEEGKEGRDGKPGPPGEP-----------GKAGEPGLPGPEGA 1271
Query: 71 GNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLG 130
P G D PRG SGA G + G+ G + P+ G
Sbjct: 1272 RGPPGFKGHTGDSGAPGPRGESGAMGLPGQEGLPGK--------DGDTGPTGPQ-----G 1318
Query: 131 PQSRRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSP 179
PQ R PPG S S GP G G G PG P+G P
Sbjct: 1319 PQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGFLGPRGPP 1368
Score = 43.1 bits (100), Expect = 2e-04
Identities = 67/228 (29%), Positives = 78/228 (34%), Gaps = 42/228 (18%)
Query: 14 PPGAVSSDGL----GAVETRPAQREAG--GGPG-PGDQPLLLCSVPRRSLGVRGARGGAR 66
PPG V + GL G TR + E G G PG PGD P GV G +G
Sbjct: 579 PPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRPGPS---GVAGPQGEKG 635
Query: 67 AVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELG 126
V P GV S Q + +G GA G Q G G PP
Sbjct: 636 DVGPAGPPGVPGSV--VQQEGLKGEQGAPGPRGHQ--------------GAPG--PPGAR 677
Query: 127 SDLGPQSRRRPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALC 185
+GP+ R PPG+ +G PG G+ G PG P GSP
Sbjct: 678 GPIGPEGRDGPPGLQGLRGKKGDMGPPGIPGLLGLQGPPGPPGVPGPPGPGGSP------ 731
Query: 186 RVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGE 233
L G GK G GP P P GT+ GE
Sbjct: 732 -----GLPGEIGFPGKPGPPGPTGPPGKDGP--NGPPGPPGTKGEPGE 772
Score = 38.5 bits (88), Expect = 0.006
Identities = 64/251 (25%), Positives = 80/251 (31%), Gaps = 33/251 (13%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPG+V + GL + +R G G P G G RG A P
Sbjct: 932 PPGSVGAPGLRGTPGKDGERGEKGAAGEEGSP-----------GPVGPRGDPGAPGLPGP 980
Query: 74 RGVGRSARDPQTKKP--RGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ-----SPPELG 126
G G+ P G G + G ++ L G+RG SP G
Sbjct: 981 PGKGKDGEPGLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVKGDRGAPGIPGSPGSRG 1040
Query: 127 SD----LGPQSRRRPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHS 181
GP PPG S S G PG G A R G PG P G P
Sbjct: 1041 DPGIGVAGPPGPSGPPGDKGSPGSRGLPGFPGPQGPAGRD---GAPGNPGERGPPGKPGL 1097
Query: 182 RALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVR 241
+L +LL + GL L PG + +G G + E +
Sbjct: 1098 SSLLSPGDINLLAKDVCNDCPPGPPGLPGL--PGFK-----GDKGVPGKPGREGTEGKKG 1150
Query: 242 LVHPPPAPGAP 252
PP PG P
Sbjct: 1151 EAGPPGLPGPP 1161
Score = 31.2 bits (69), Expect = 0.90
Identities = 66/243 (27%), Positives = 76/243 (31%), Gaps = 51/243 (20%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
PPGA +G A G PG PG S P S+G G RG
Sbjct: 899 PPGAKGQEGAHGAPG------AAGNPGAPGHVGAPGPSGPPGSVGAPGLRGTPGKDGERG 952
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQ 132
+G P PRG GA G PP G D G
Sbjct: 953 EKGAAGEEGSPGPVGPRGDPGAPGLPG----------------------PPGKGKD-GEP 989
Query: 133 SRRRPPGVTSSLPSLDSLG-----PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRV 187
R PG+ L + + G C Q + G R PG GSP SR
Sbjct: 990 GLRGSPGLPGPLGTKAACGKVRGSENCALGGQCVK--GDRGAPG---IPGSPGSR----- 1039
Query: 188 VGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLVHPPP 247
GD +G + G G + SPG R P P G Q G D PP
Sbjct: 1040 -GDPGIG---VAGPPGPSGPPGDKGSPGSR-GLPGFP-GPQGPAGRDGAPGNPGERGPPG 1093
Query: 248 APG 250
PG
Sbjct: 1094 KPG 1096
Score = 27.7 bits (60), Expect = 9.9
Identities = 62/250 (24%), Positives = 79/250 (31%), Gaps = 63/250 (25%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPG GL ++ P G PGPG P G+ G G P
Sbjct: 703 PPGI---PGLLGLQGPPGPPGVPGPPGPGGSP-----------GLPGEIGFPGKPGPPGP 748
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ----SPPELGSDL 129
G P P G G ++G GERG+ P L ++
Sbjct: 749 TG------PPGKDGPNGPPGPPGTKGEP--------------GERGEDGLPGKPGLRGEI 788
Query: 130 GPQSRRRPPGV--TSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRV 187
G Q PG + LP PG GV G QG L +
Sbjct: 789 GEQGLAGRPGEKGEAGLPG----APGFPGVR------------GEKGDQGEKGELGLPGL 832
Query: 188 VGDHLLGSWLITGKDG--STQGLQQLWSPGPRIRHPAAPQGTQ--KGL-GEDAFEERVRL 242
GD G G G G L++P PR+ P+G + GL GE + R
Sbjct: 833 KGDR--GEKGEAGPAGPPGLPGTTSLFTPHPRMPGEQGPKGEKGDPGLPGEPGLQGRPGE 890
Query: 243 VHPPPAPGAP 252
+ P G P
Sbjct: 891 LGPQGPTGPP 900
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 44.3 bits (103), Expect = 1e-04
Identities = 67/238 (28%), Positives = 83/238 (34%), Gaps = 62/238 (26%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAV 68
K +R PPG S GL V RP + G PGP G +G +G
Sbjct: 1494 KGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGP--------------TGRQGEKG--EPG 1537
Query: 69 SAGNPRGVGRSARDPQTKK-------PRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQS 121
G+P VG + P+ +K PRG +G GERG
Sbjct: 1538 RPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQ--------------------GERGPP 1577
Query: 122 PPELGSDLGPQ---SRRRPPGVTSSL-PSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
L D GP+ R P G+T P DS PG G RPG P G
Sbjct: 1578 GLVLPGDPGPKGDPGDRGPIGLTGRAGPPGDSGPPG---------EKGDPGRPGPPGPVG 1628
Query: 178 SPHSRALCRVVGDH-LLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGED 234
GD G + GK G +GL+ P +R P +G Q GED
Sbjct: 1629 PRGRDGEVGEKGDEGPPGDPGLPGKAGE-RGLR----GAPGVRGPVGEKGDQGDPGED 1681
Score = 44.3 bits (103), Expect = 1e-04
Identities = 67/245 (27%), Positives = 85/245 (34%), Gaps = 49/245 (20%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPG G R G PGP P L +LG RG G P
Sbjct: 1989 PPGKEGPIGFPGERGLKGDR---GDPGPQGPPGL-------ALGERGPPG---------P 2029
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQS----PPELGSDL 129
G+ P GR+G V E + + R GERG+ PP L
Sbjct: 2030 SGLAGEPGKPGIPGLPGRAGG-VGEAGRPGERGERGEK----GERGEQGRDGPPGLPGTP 2084
Query: 130 GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVG 189
GP PG S+D GPG +G G + PG QG R + + G
Sbjct: 2085 GP------PGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKG 2138
Query: 190 DHLLGSWLITGKDGS--TQGLQQLWSP--GPRIRHPAAPQGTQKGLGEDAFEERVRLVHP 245
D G G+DG+ G + + P P ++ P P G G G+ P
Sbjct: 2139 DR--GEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPG---------P 2187
Query: 246 PPAPG 250
P APG
Sbjct: 2188 PGAPG 2192
Score = 42.0 bits (97), Expect = 5e-04
Identities = 65/223 (29%), Positives = 80/223 (35%), Gaps = 31/223 (13%)
Query: 14 PPGA-VSSD----GLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARGGARA 67
PPG VS D GL + P + A G PG GDQ P+ GV G +G
Sbjct: 2089 PPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQG------PKGDRGVPGIKG---- 2138
Query: 68 VSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGS 127
G P G+ +P RG +G G LQ R GG PP
Sbjct: 2139 -DRGEPGPRGQDG-NPGLPGERGMAGPEGKPG----LQGPRGPPGPVGGHGDPGPPGAPG 2192
Query: 128 DLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRV 187
GP + P G+ G G TG G G PQGSP L
Sbjct: 2193 LAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSP---GLPGQ 2249
Query: 188 VGDHLLGSWLITGKDGSTQGLQQLWSPG----PRIRHPAAPQG 226
VG+ G G+DG++ SPG P + P P+G
Sbjct: 2250 VGE--TGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKG 2290
Score = 37.4 bits (85), Expect = 0.013
Identities = 53/193 (27%), Positives = 63/193 (32%), Gaps = 29/193 (15%)
Query: 14 PPGAVSSDG---LGAVETRPAQREAGGGPGPGDQPLLLCSV----PRRSLGVRGARG--- 63
PPG+ ++ G + RP G PG P L S PR G RG RG
Sbjct: 1288 PPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKG 1347
Query: 64 --GARA-VSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQ--VWLQHARL--------- 109
GA V G G+ DP P G G G + L +
Sbjct: 1348 EPGAPGQVIGGEGPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGE 1407
Query: 110 RSCLWGGERGQSP-----PELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHA 164
R GE G +P P L GPQ PPG + PG G
Sbjct: 1408 RGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQ 1467
Query: 165 GGRHRPGGAAPQG 177
G R PG P+G
Sbjct: 1468 GPRGPPGAIGPKG 1480
Score = 36.6 bits (83), Expect = 0.021
Identities = 64/250 (25%), Positives = 81/250 (32%), Gaps = 49/250 (19%)
Query: 14 PPG--AVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRS----LGVRGARGGARA 67
PPG D P Q + G GP P + R LG G +G
Sbjct: 1440 PPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGP 1499
Query: 68 VSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ--SPPEL 125
RG+ A P K P G G +G + GE G+ P +
Sbjct: 1500 PGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEK--------------GEPGRPGDPAVV 1545
Query: 126 GSDL-GPQSRRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSPHSRA 183
G + GP+ + G GP G TGV Q R G PG P+G P R
Sbjct: 1546 GPAVAGPKGEKGDVG---------PAGPRGATGV-QGERGPPGLVLPGDPGPKGDPGDRG 1595
Query: 184 LCRVVGDHLLGSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQGTQKGLGEDAFEERVRL 242
+ G G G + + PG P P P+G +GE E
Sbjct: 1596 PIGLTGR--------AGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDE----- 1642
Query: 243 VHPPPAPGAP 252
PP PG P
Sbjct: 1643 -GPPGDPGLP 1651
Score = 33.1 bits (74), Expect = 0.24
Identities = 50/187 (26%), Positives = 63/187 (33%), Gaps = 34/187 (18%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAV 68
K R PPG DG ++ +P G G + P R G+ G RG
Sbjct: 1769 KGDRGPPGL---DGRSGLDGKPGAAGPSGPNGAAGK----AGDPGRD-GLPGLRGEQGLP 1820
Query: 69 SAGNPRGV-GRSARD--PQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPE- 124
P G+ G+ D P G G +G + GE+G S
Sbjct: 1821 GPSGPPGLPGKPGEDGKPGLNGKNGEPGDPGEDGRK--------------GEKGDSGASG 1866
Query: 125 -LGSDLGPQSRRRPPGVTS-----SLPS-LDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
G D GP+ R PG+ LP + G G GV T G R G QG
Sbjct: 1867 REGRD-GPKGERGAPGILGPQGPPGLPGPVGPPGQGFPGVPGGTGPKGDRGETGSKGEQG 1925
Query: 178 SPHSRAL 184
P R L
Sbjct: 1926 LPGERGL 1932
Score = 29.3 bits (64), Expect = 3.4
Identities = 48/194 (24%), Positives = 62/194 (31%), Gaps = 39/194 (20%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGP----------------------GDQPLLLCSV 51
P G G+ + RP Q G GP GD ++L
Sbjct: 2470 PRGERGEPGIRGEDGRPGQEGPRGLTGPPGSRGERGEKGDVGSAGLKGDKGDSAVILGPP 2529
Query: 52 -PRRSLGVRGARGGARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLR 110
PR + G G RG PRG D +K G G+A G LR
Sbjct: 2530 GPRGAKGDMGERGPRGLDGDKGPRGDNGDPGDKGSKGEPGDKGSAGLPG---------LR 2580
Query: 111 SCLWGGERGQ-SPPELGSDLGPQSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAG 165
L G +GQ + D G + PG+ + +GP G GV G
Sbjct: 2581 GLL--GPQGQPGAAGIPGDPGSPGKDGVPGIRGEKGDVGFMGPRGLKGERGVKGACGLDG 2638
Query: 166 GRHRPGGAAPQGSP 179
+ G A P G P
Sbjct: 2639 EKGDKGEAGPPGRP 2652
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 43.1 bits (100), Expect = 2e-04
Identities = 48/173 (27%), Positives = 59/173 (34%), Gaps = 14/173 (8%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQP----LLLCSVPRRSLGVRGARGGARAVS 69
PPG G E R ++ A G PGP P + P +G G RG V
Sbjct: 1308 PPGKRGPSGHMGREGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVG 1367
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLW----GGERG-QSPPE 124
G P P G G G + H L + GE+G Q P
Sbjct: 1368 EPGLLGAPGQMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPG 1427
Query: 125 LGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
+ GP+ PPG SL PG GVA G + PG P+G
Sbjct: 1428 VQGPPGPKGDPGPPGPIGSLGH-----PGPPGVAGPLGQKGSKGSPGSMGPRG 1475
Score = 40.4 bits (93), Expect = 0.001
Identities = 73/257 (28%), Positives = 89/257 (34%), Gaps = 50/257 (19%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG DG E P G PG PR LG RG+ G G P
Sbjct: 574 PGPPGEDGERGAEGPPGPTGQAGEPG-----------PRGLLGPRGSPG-----PTGRP- 616
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSR 134
GV P K G G G Q G Q P +G
Sbjct: 617 GVTGIDGAPGAKGNVGPPGEPGPPGQQ-------------GNHGSQGLPGPQGLIGTPGE 663
Query: 135 RRPPGVTSSLPSL-DSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVGDH- 191
+ PPG +P L S GP G G T G + PG A P G P R + G+
Sbjct: 664 KGPPG-NPGIPGLPGSDGPLGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSGNRG 722
Query: 192 LLGSWLITGKDG-----STQGLQ----QLWSPGPRIRH-PAAPQGTQKGLGED----AFE 237
L G G+DG GL+ + +PGPR P P+G GE+ +
Sbjct: 723 LQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGEEGPPGSAG 782
Query: 238 ERVRLVHP--PPAPGAP 252
E+ +L P P PG P
Sbjct: 783 EKGKLGVPGLPGYPGRP 799
Score = 38.9 bits (89), Expect = 0.004
Identities = 68/252 (26%), Positives = 82/252 (32%), Gaps = 50/252 (19%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPG GL +E R + G PGP L P G G +GG G+P
Sbjct: 939 PPGPPGEQGLPGLEGREGAKGELGPPGP-----LGKEGPAGLRGFPGPKGG-----PGDP 988
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQS 133
G K P G GA S G + L A L G + P G +
Sbjct: 989 GPTGLKG----DKGPPGPVGANGSPGERGPLGPAG-GIGLPGQSGSEGPVGPAGKKGSRG 1043
Query: 134 RRRPPGVT--SSLPS-LDSLGP----------GCTGVAQRTRHAGGRHRPGGAAPQGSPH 180
R PPG T +P L LGP G G H G + G A P G P
Sbjct: 1044 ERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQPG 1103
Query: 181 SRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERV 240
R G G DG+ QG + P G G+D V
Sbjct: 1104 IRGPAGHPGP--------PGADGA-QGRR-------------GPPGLFGQKGDDGVRGFV 1141
Query: 241 RLVHPPPAPGAP 252
++ PP G P
Sbjct: 1142 GVIGPPGLQGLP 1153
Score = 33.1 bits (74), Expect = 0.24
Identities = 70/275 (25%), Positives = 88/275 (32%), Gaps = 63/275 (22%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAV----- 68
PPGA G+ P G PGP P L +P G+ G RG V
Sbjct: 393 PPGAPGPQGVVGPSGPPGPPGFPGDPGP-PGPAGLPGIP----GIDGIRGPPGTVIMMPF 447
Query: 69 --SAGNPRGVGRSARDPQT-----------KKPRGRSGAAVSEGSQVWLQHARLRSCLWG 115
+ G+ +G S + Q K P G G G H L+
Sbjct: 448 QFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKGPPGPVGLTGRPGPVGLPGHPGLK----- 502
Query: 116 GERGQSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAP 175
GE G P+ GP+ + P G PG G R G R PG P
Sbjct: 503 GEEGAEGPQ-----GPRGLQGPHG-----------PPGRVGKMGRPGADGARGLPGDTGP 546
Query: 176 QGSPHSRALCRVVGDH-------LLGSWLITGKDGSTQGLQ-------QLWSPGPR---- 217
+G L + G+ +G G+DG +G + Q PGPR
Sbjct: 547 KGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGE-RGAEGPPGPTGQAGEPGPRGLLG 605
Query: 218 IRHPAAPQGTQKGLGEDAFEERVRLVHPPPAPGAP 252
R P G G D V PP PG P
Sbjct: 606 PRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPP 640
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 42.4 bits (98), Expect = 4e-04
Identities = 64/242 (26%), Positives = 86/242 (35%), Gaps = 47/242 (19%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGG---GPGPGDQPLLLCSVPRRSLGVRGARGGARAVSA 70
PPG GLG AQ + G GPGP +G+ G RG A A
Sbjct: 64 PPGPPGPPGLGG--NFAAQYDGKGVGLGPGP--------------MGLMGPRGPPGAAGA 107
Query: 71 GNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLG 130
P+G A +P G +GA G + G+ G+ P E G +G
Sbjct: 108 PGPQGFQGPAGEPGEPGQTGPAGARGPAGPP-----GKAGEDGHPGKPGR-PGERGV-VG 160
Query: 131 PQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVGD 190
PQ R PG P L PG G+ G + +PG +G P + G
Sbjct: 161 PQGARGFPGT----PGL----PGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQ 212
Query: 191 HLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLVHPPPAPG 250
TG G ++ +PG PA +G+ +G + PP PG
Sbjct: 213 --------TGARGLPGERGRVGAPG-----PAGARGSDGSVGPVGPAGPIGSAGPPGFPG 259
Query: 251 AP 252
AP
Sbjct: 260 AP 261
Score = 38.1 bits (87), Expect = 0.007
Identities = 56/241 (23%), Positives = 70/241 (29%), Gaps = 62/241 (25%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG----PGDQPLLLCSVPRRSLGVRGARGGARAVS 69
PPG +G G PG PG + L +G G+RG +
Sbjct: 371 PPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPGSRGASGPAG 430
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL 129
P G +P PRG G+ ++
Sbjct: 431 VRGPNGDAGRPGEPGLMGPRGLPGSP-------------------------------GNI 459
Query: 130 GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVG 189
GP + P G LP +D PG G A G PG P G P G
Sbjct: 460 GPAGKEGPVG----LPGIDG-RPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAG 514
Query: 190 DHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLVHPPPAP 249
L G+ G DG+ + P PQG Q G GE PP P
Sbjct: 515 --LAGARGAPGPDGNNGA-----------QGPPGPQGVQGGKGEQG---------PPGPP 552
Query: 250 G 250
G
Sbjct: 553 G 553
Score = 38.1 bits (87), Expect = 0.007
Identities = 68/244 (27%), Positives = 78/244 (31%), Gaps = 51/244 (20%)
Query: 12 RFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVP--RRSLGVRGARGGARAVS 69
R PPGAV S G V P + G PG D P P + G G G A
Sbjct: 906 RGPPGAVGSPG---VNGAPGEAGRDGNPG-NDGPPGRDGQPGHKGERGYPGNIGPVGAAG 961
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPE-LGSD 128
A P G A + G SG G+ G RG S P+ + D
Sbjct: 962 APGPHGPVGPAGKHGNRGETGPSGPVGPAGAV--------------GPRGPSGPQGIRGD 1007
Query: 129 LGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVV 188
G + P G LP L G G+ H G + PG P G P A
Sbjct: 1008 KGEPGEKGPRG----LPGLKGHN-GLQGLPGIAGHHGDQGAPGSVGPAG-PRGPA----- 1056
Query: 189 GDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLVHPPPA 248
G GKDG T + G R PQG Q G PP
Sbjct: 1057 -----GPSGPAGKDGRTGHPGTVGPAGIR-----GPQGHQGPAGPPG---------PPGP 1097
Query: 249 PGAP 252
PG P
Sbjct: 1098 PGPP 1101
Score = 35.8 bits (81), Expect = 0.037
Identities = 58/266 (21%), Positives = 80/266 (30%), Gaps = 73/266 (27%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG + G P +R G PGP G RG+ G V P
Sbjct: 204 PGENGTPGQTGARGLPGERGRVGAPGPA--------------GARGSDGSVGPVGPAGPI 249
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ-SPPELGSDLGPQS 133
G P P+G GA + G G RG+ P L +GP
Sbjct: 250 GSAGPPGFPGAPGPKGEIGAVGNAGPAGP-----------AGPRGEVGLPGLSGPVGPPG 298
Query: 134 RRRPPGVTSSLPSLDSLG-------------PGCTGVAQRTR---------------HAG 165
G+T + + G PG G A T +G
Sbjct: 299 NPGANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESG 358
Query: 166 GRHRPGGAAPQGSPHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQ 225
+ PG A PQG P +G++G + S GP P +
Sbjct: 359 NKGEPGSAGPQGPPGP-----------------SGEEGKRGPNGEAGSAGP--PGPPGLR 399
Query: 226 GTQKGLGEDAFEERVRLVHPPPAPGA 251
G+ G + R ++ PP + GA
Sbjct: 400 GSPGSRGLPGADGRAGVMGPPGSRGA 425
Score = 34.3 bits (77), Expect = 0.11
Identities = 49/187 (26%), Positives = 61/187 (32%), Gaps = 27/187 (14%)
Query: 16 GAVSSDGLGAVETRPAQREAGG---GPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
GAV + G P +R A G G G +P L + G GARG AV A
Sbjct: 628 GAVGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNP--GRDGARGAPGAVGAPG 685
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLW----------GGERGQSP 122
P G + P G +G S G + + A GERG
Sbjct: 686 PAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQPGAKGERGAKG 745
Query: 123 PELGSDL----------GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGG 172
P+ + + GP PPG S D PG TG G G
Sbjct: 746 PKGENGVVGPTGPVGAAGPAGPNGPPGPAGSRG--DGGPPGMTGFPGAAGRTGPPGPSGI 803
Query: 173 AAPQGSP 179
+ P G P
Sbjct: 804 SGPPGPP 810
Score = 32.7 bits (73), Expect = 0.31
Identities = 46/185 (24%), Positives = 61/185 (32%), Gaps = 24/185 (12%)
Query: 9 KSKRFPPGAVSSDGLGAVET------RPAQREAGGG---PGPGDQPLLLCSVPRRSLGVR 59
K ++ PPG GL +P +R G PGP PR G
Sbjct: 543 KGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAG--------PRGERGPP 594
Query: 60 GARGGARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQ--VWLQHARLRSCLWGGE 117
G G A RG K G GA + G L R + + GG+
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGGK 654
Query: 118 RGQSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
+ P L ++G R G ++ + PG G AG G A P+G
Sbjct: 655 GEKGEPGLRGEIGNPGRDGARGAPGAVGA-----PGPAGATGDRGEAGAAGPAGPAGPRG 709
Query: 178 SPHSR 182
SP R
Sbjct: 710 SPGER 714
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 42.4 bits (98), Expect = 4e-04
Identities = 68/248 (27%), Positives = 82/248 (33%), Gaps = 31/248 (12%)
Query: 12 RFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAG 71
R PPG + G G P G GP P LL R G G G G
Sbjct: 304 RGPPGLIGPTGYGM----PGLPGPKGDRGPAGVPGLLGD--RGEPGEDGEPGEQGPQGLG 357
Query: 72 NPRGVGRSARDPQTKKPRGRSGAAVSEGSQ--VWLQHARLRSCLWG-----GERGQSPPE 124
P G+ SA P + P G G A G ++ + S L G GERG P
Sbjct: 358 GPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGL--PG 415
Query: 125 LGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRAL 184
GP + PG T P GPG G + G +PG P G P +
Sbjct: 416 AHGPPGPTGPKGEPGFTGR-PG----GPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGP 470
Query: 185 CRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLVH 244
+G L + G+ G PGP A GT G +
Sbjct: 471 AGPIGPQGLPG--LKGEPGL---------PGPPGEGRAGEPGTAGPTGPPGVPGSPGITG 519
Query: 245 PPPAPGAP 252
PP PG P
Sbjct: 520 PPGPPGPP 527
Score = 32.0 bits (71), Expect = 0.53
Identities = 63/267 (23%), Positives = 86/267 (32%), Gaps = 36/267 (13%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
P + GL + P + G PG PG + P+ GV G G A P
Sbjct: 233 PAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGV-GVPGAAGLPGP 291
Query: 74 RGVGRSARDPQTKKPRGRSGAAVS-----EGSQVWLQHARLRSCLWGGERGQ-------- 120
+G + +P T+ P G G G + A + L G+RG+
Sbjct: 292 QGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLL--GDRGEPGEDGEPG 349
Query: 121 --------SPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGG 172
PP L G RR PPG + PG G+ +G +PG
Sbjct: 350 EQGPQGLGGPPGLPGSAGLPGRRGPPGPKGE--AGPGGPPGVPGIRGDQGPSGLAGKPGV 407
Query: 173 AAPQGSPHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPG-------PRIRHPAAPQ 225
+G P + G G TG+ G L G P +R P+
Sbjct: 408 PGERGLPGAHGPPGPTGPK--GEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIP 465
Query: 226 GTQKGLGEDAFEERVRLVHPPPAPGAP 252
G Q G + L P PG P
Sbjct: 466 GLQGPAGPIGPQGLPGLKGEPGLPGPP 492
Score = 30.8 bits (68), Expect = 1.2
Identities = 46/173 (26%), Positives = 54/173 (31%), Gaps = 29/173 (16%)
Query: 16 GAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP- 73
G GL P Q G PG GDQ L R G G G + G P
Sbjct: 123 GKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGL------RGPPGPPGLPGPSGITIPGKPG 176
Query: 74 -RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQ 132
+GV P+G G G + G+ G P L G
Sbjct: 177 AQGVPGPPGFQGEPGPQGEPGPPGDRGLK--------------GDNGVGQPGLPGAPGQG 222
Query: 133 SRRRPPGVTSSL----PSLDSL--GPGCTGVAQRTRHAGGRHRPGGAAPQGSP 179
PPG+ P LD L PG G + G R PG P+G P
Sbjct: 223 GAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPP 275
>gi|115527070 alpha 2 type VI collagen isoform 2C2a' precursor [Homo
sapiens]
Length = 828
Score = 42.4 bits (98), Expect = 4e-04
Identities = 62/250 (24%), Positives = 90/250 (36%), Gaps = 51/250 (20%)
Query: 11 KRFPPGAVSSDGLGAVETR------PAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGG 64
+R PPG + + G + P + A GGPGP P+ G RG G
Sbjct: 380 RRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRG--------PKGEPGRRGDPGT 431
Query: 65 ARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPE 124
+ + P+G DP + PRG +G ++G++ G+RG P
Sbjct: 432 KGSPGSDGPKG---EKGDPGPEGPRGLAGEVGNKGAK--------------GDRGLPGPR 474
Query: 125 LGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGA--APQGSPHSR 182
GPQ PG S GP G + + G RPG + P+G+P +
Sbjct: 475 -----GPQGALGEPGKQGSRGDPGDAGP--RGDSGQPGPKGDPGRPGFSYPGPRGAPGEK 527
Query: 183 ALCRVVG-DHLLGSWLITGKDGSTQGLQQLWSPGPRIR-HPAAPQGTQKGLGEDAFEERV 240
G + G + + G+ G + PGP P P+G GE
Sbjct: 528 GEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPG----- 582
Query: 241 RLVHPPPAPG 250
PP PG
Sbjct: 583 ----PPGDPG 588
>gi|115527066 alpha 2 type VI collagen isoform 2C2a precursor [Homo
sapiens]
Length = 918
Score = 42.4 bits (98), Expect = 4e-04
Identities = 62/250 (24%), Positives = 90/250 (36%), Gaps = 51/250 (20%)
Query: 11 KRFPPGAVSSDGLGAVETR------PAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGG 64
+R PPG + + G + P + A GGPGP P+ G RG G
Sbjct: 380 RRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRG--------PKGEPGRRGDPGT 431
Query: 65 ARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPE 124
+ + P+G DP + PRG +G ++G++ G+RG P
Sbjct: 432 KGSPGSDGPKG---EKGDPGPEGPRGLAGEVGNKGAK--------------GDRGLPGPR 474
Query: 125 LGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGA--APQGSPHSR 182
GPQ PG S GP G + + G RPG + P+G+P +
Sbjct: 475 -----GPQGALGEPGKQGSRGDPGDAGP--RGDSGQPGPKGDPGRPGFSYPGPRGAPGEK 527
Query: 183 ALCRVVG-DHLLGSWLITGKDGSTQGLQQLWSPGPRIR-HPAAPQGTQKGLGEDAFEERV 240
G + G + + G+ G + PGP P P+G GE
Sbjct: 528 GEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPG----- 582
Query: 241 RLVHPPPAPG 250
PP PG
Sbjct: 583 ----PPGDPG 588
>gi|115527062 alpha 2 type VI collagen isoform 2C2 precursor [Homo
sapiens]
Length = 1019
Score = 42.4 bits (98), Expect = 4e-04
Identities = 62/250 (24%), Positives = 90/250 (36%), Gaps = 51/250 (20%)
Query: 11 KRFPPGAVSSDGLGAVETR------PAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGG 64
+R PPG + + G + P + A GGPGP P+ G RG G
Sbjct: 380 RRGPPGEIGAKGSKGYQGNSGAPGSPGVKGAKGGPGPRG--------PKGEPGRRGDPGT 431
Query: 65 ARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPE 124
+ + P+G DP + PRG +G ++G++ G+RG P
Sbjct: 432 KGSPGSDGPKG---EKGDPGPEGPRGLAGEVGNKGAK--------------GDRGLPGPR 474
Query: 125 LGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGA--APQGSPHSR 182
GPQ PG S GP G + + G RPG + P+G+P +
Sbjct: 475 -----GPQGALGEPGKQGSRGDPGDAGP--RGDSGQPGPKGDPGRPGFSYPGPRGAPGEK 527
Query: 183 ALCRVVG-DHLLGSWLITGKDGSTQGLQQLWSPGPRIR-HPAAPQGTQKGLGEDAFEERV 240
G + G + + G+ G + PGP P P+G GE
Sbjct: 528 GEPGPRGPEGGRGDFGLKGEPGRKGEKGEPADPGPPGEPGPRGPRGVPGPEGEPG----- 582
Query: 241 RLVHPPPAPG 250
PP PG
Sbjct: 583 ----PPGDPG 588
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 42.0 bits (97), Expect = 5e-04
Identities = 56/236 (23%), Positives = 75/236 (31%), Gaps = 47/236 (19%)
Query: 16 GAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPRG 75
GA +DG P GGPG P GA+G A A P G
Sbjct: 342 GARGNDGQPGPAGPPGPVGPAGGPGFPGAP--------------GAKGEAGPTGARGPEG 387
Query: 76 VGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSRR 135
+P T G +GA+ + G+ + G + P + G R
Sbjct: 388 AQGPRGEPGTPGSPGPAGASGNPGT----------DGIPGAKGSAGAPGIAGAPGFPGPR 437
Query: 136 RPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVGDHLLG 194
PPG + L G G G+A G + PG A PQG+P
Sbjct: 438 GPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP------------- 484
Query: 195 SWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLVHPPPAPG 250
G++G + G P P G + G F + L P APG
Sbjct: 485 ----AGEEGKRGARGEPGGVG-----PIGPPGERGAPGNRGFPGQDGLAGPKGAPG 531
Score = 42.0 bits (97), Expect = 5e-04
Identities = 65/245 (26%), Positives = 78/245 (31%), Gaps = 49/245 (20%)
Query: 12 RFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAG 71
R PPG V GL P + + G GP + + GV+G RG AV A
Sbjct: 1016 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRD--------GAAGVKGDRGETGAVGAP 1067
Query: 72 NPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL-G 130
G S P P G+ G G+Q G G S P + G
Sbjct: 1068 GAPGPPGS---PGPAGPTGKQGDRGEAGAQ--------------GPMGPSGPAGARGIQG 1110
Query: 131 PQSRRRPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVG 189
PQ R G G G TG+ G G + P G R VG
Sbjct: 1111 PQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVG 1170
Query: 190 DHLLGSWLITGKDGSTQGLQQLWSPGPRIRH----PAAPQGTQKGLGEDAFEERVRLVHP 245
+GKDG+ + PGPR R PA P G G
Sbjct: 1171 P--------SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG---------- 1212
Query: 246 PPAPG 250
PP PG
Sbjct: 1213 PPGPG 1217
Score = 40.8 bits (94), Expect = 0.001
Identities = 64/258 (24%), Positives = 83/258 (32%), Gaps = 41/258 (15%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG-------PGDQPLLLCSVPRRSLGVRGARGGAR 66
PPGA G + Q+ G PG PG Q + P+ + G +G G
Sbjct: 838 PPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG 897
Query: 67 AVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG----QSP 122
A G S +P P G SG +G++ G+ G
Sbjct: 898 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR--------------GDSGPPGRAGE 943
Query: 123 PELGSDLGPQSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAAPQGS 178
P L GP + PG + GP G G+ G R PG P G
Sbjct: 944 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 1003
Query: 179 PHSRALCRVVGDH----LLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGED 234
P + GD +G +TG G + GP R AA G + GE
Sbjct: 1004 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA--GVKGDRGET 1061
Query: 235 AFEERVRLVHPPPAPGAP 252
V P APG P
Sbjct: 1062 G------AVGAPGAPGPP 1073
Score = 36.6 bits (83), Expect = 0.021
Identities = 57/218 (26%), Positives = 73/218 (33%), Gaps = 45/218 (20%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGAR---GGA 65
K ++ PG DG P G PGP LG A GG
Sbjct: 140 KGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPP------------GLGGNFAAQMAGGF 187
Query: 66 RAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPEL 125
+ G GV + P PRG G A + G Q + + GE G+ P +
Sbjct: 188 DEKAGGAQLGVMQGPMGPMG--PRGPPGPAGAPGPQGFQGNP--------GEPGE--PGV 235
Query: 126 GSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALC 185
+GP+ PPG PG G A + AG R PG +G P + L
Sbjct: 236 SGPMGPRGPPGPPGK-----------PGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLP 284
Query: 186 RVVG-------DHLLGSWLITGKDGSTQGLQQLWSPGP 216
V G D G G G + + SPGP
Sbjct: 285 GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGP 322
Score = 35.8 bits (81), Expect = 0.037
Identities = 65/248 (26%), Positives = 72/248 (29%), Gaps = 50/248 (20%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPG GLG AQ G G L + P +G RG G A A
Sbjct: 166 PPGPPGPPGLGG--NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGF 223
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQS 133
+G +P P G G G GERG PP GPQ
Sbjct: 224 QGNPGEPGEPGVSGPMGPRGPPGPPGKPG--DDGEAGKPGKAGERG--PP------GPQG 273
Query: 134 RRRPPGVTS--------SLPSLDSLG--PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRA 183
R PG P LD G GV + G PG P+G P R
Sbjct: 274 ARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERG 333
Query: 184 LCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLV 243
TG G+ PG PA P G G F
Sbjct: 334 R--------------TGPAGAAGARGNDGQPG-----PAGPPGPVGPAGGPGF------- 367
Query: 244 HPPPAPGA 251
P APGA
Sbjct: 368 --PGAPGA 373
Score = 35.0 bits (79), Expect = 0.062
Identities = 58/249 (23%), Positives = 81/249 (32%), Gaps = 14/249 (5%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
PPG G + P + A G GP G++ + G++G RG
Sbjct: 670 PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG 729
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG-QSPPELGSDLGP 131
P+G A P + P G G G+ R + GE+G + P G
Sbjct: 730 PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV--GEKGPEGAPGKDGGRGL 787
Query: 132 QSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRV 187
PPG + +GP G G G PG A G P +
Sbjct: 788 TGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 847
Query: 188 VGDHLLGSWLITGKDGSTQGLQQLWSPGPR----IRHPAAPQGTQKGLGEDAFEERVRLV 243
G+ G G G+ +PGP+ + P +G Q G F V
Sbjct: 848 KGEQ--GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 905
Query: 244 HPPPAPGAP 252
PP + G P
Sbjct: 906 GPPGSNGNP 914
Score = 34.3 bits (77), Expect = 0.11
Identities = 68/273 (24%), Positives = 81/273 (29%), Gaps = 50/273 (18%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG----------------PGDQPLLLCSVPRRSLG 57
PPG + G V P + A G PG PG + P G
Sbjct: 589 PPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAG 648
Query: 58 VRGARG--GARAVS--------------AGNP--RGVGRSARDPQTKKPRGRSGAAVSEG 99
G RG GA S G P +GV A P PRG G G
Sbjct: 649 PAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERG 708
Query: 100 SQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQ 159
S Q + L G P GP + PPG+ PG G A
Sbjct: 709 SP-GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM--------PGERGAAG 759
Query: 160 RTRHAGGRHRPGGAAPQGSPHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIR 219
G R G P+G+P G L G G G+ ++ PGP
Sbjct: 760 IAGPKGDRGDVGEKGPEGAPGKDG-----GRGLTGPIGPPGPAGANGEKGEVGPPGP--A 812
Query: 220 HPAAPQGTQKGLGEDAFEERVRLVHPPPAPGAP 252
A +G GE PP A G P
Sbjct: 813 GSAGARGAPGERGETGPPGPAGFAGPPGADGQP 845
Score = 32.0 bits (71), Expect = 0.53
Identities = 42/163 (25%), Positives = 54/163 (33%), Gaps = 41/163 (25%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PGA S G + P G PGP P P+ + G G +G +
Sbjct: 416 PGAKGSAGAPGIAGAP------GFPGPRGPP-----GPQGATGPLGPKGQTGEPGIAGFK 464
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSR 134
G +P P+G G A EG + G RG+ P +G +GP
Sbjct: 465 GEQGPKGEPGPAGPQGAPGPAGEEGKR--------------GARGE-PGGVGP-IGPPGE 508
Query: 135 RRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
R PG P D L AG + PG P G
Sbjct: 509 RGAPG-NRGFPGQDGL-------------AGPKGAPGERGPSG 537
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 42.0 bits (97), Expect = 5e-04
Identities = 56/236 (23%), Positives = 75/236 (31%), Gaps = 47/236 (19%)
Query: 16 GAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPRG 75
GA +DG P GGPG P GA+G A A P G
Sbjct: 273 GARGNDGQPGPAGPPGPVGPAGGPGFPGAP--------------GAKGEAGPTGARGPEG 318
Query: 76 VGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSRR 135
+P T G +GA+ + G+ + G + P + G R
Sbjct: 319 AQGPRGEPGTPGSPGPAGASGNPGT----------DGIPGAKGSAGAPGIAGAPGFPGPR 368
Query: 136 RPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVGDHLLG 194
PPG + L G G G+A G + PG A PQG+P
Sbjct: 369 GPPGPQGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGP------------- 415
Query: 195 SWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLVHPPPAPG 250
G++G + G P P G + G F + L P APG
Sbjct: 416 ----AGEEGKRGARGEPGGVG-----PIGPPGERGAPGNRGFPGQDGLAGPKGAPG 462
Score = 42.0 bits (97), Expect = 5e-04
Identities = 65/245 (26%), Positives = 78/245 (31%), Gaps = 49/245 (20%)
Query: 12 RFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAG 71
R PPG V GL P + + G GP + + GV+G RG AV A
Sbjct: 947 RGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRD--------GAAGVKGDRGETGAVGAP 998
Query: 72 NPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL-G 130
G S P P G+ G G+Q G G S P + G
Sbjct: 999 GAPGPPGS---PGPAGPTGKQGDRGEAGAQ--------------GPMGPSGPAGARGIQG 1041
Query: 131 PQSRRRPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVG 189
PQ R G G G TG+ G G + P G R VG
Sbjct: 1042 PQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVG 1101
Query: 190 DHLLGSWLITGKDGSTQGLQQLWSPGPRIRH----PAAPQGTQKGLGEDAFEERVRLVHP 245
+GKDG+ + PGPR R PA P G G
Sbjct: 1102 P--------SGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPG---------- 1143
Query: 246 PPAPG 250
PP PG
Sbjct: 1144 PPGPG 1148
Score = 40.8 bits (94), Expect = 0.001
Identities = 64/258 (24%), Positives = 83/258 (32%), Gaps = 41/258 (15%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG-------PGDQPLLLCSVPRRSLGVRGARGGAR 66
PPGA G + Q+ G PG PG Q + P+ + G +G G
Sbjct: 769 PPGADGQPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATG 828
Query: 67 AVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG----QSP 122
A G S +P P G SG +G++ G+ G
Sbjct: 829 FPGAAGRVGPPGSNGNPGPPGPPGPSGKDGPKGAR--------------GDSGPPGRAGE 874
Query: 123 PELGSDLGPQSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAAPQGS 178
P L GP + PG + GP G G+ G R PG P G
Sbjct: 875 PGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGE 934
Query: 179 PHSRALCRVVGDH----LLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGED 234
P + GD +G +TG G + GP R AA G + GE
Sbjct: 935 PGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGADGPPGRDGAA--GVKGDRGET 992
Query: 235 AFEERVRLVHPPPAPGAP 252
V P APG P
Sbjct: 993 G------AVGAPGAPGPP 1004
Score = 36.6 bits (83), Expect = 0.021
Identities = 57/218 (26%), Positives = 73/218 (33%), Gaps = 45/218 (20%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGAR---GGA 65
K ++ PG DG P G PGP LG A GG
Sbjct: 71 KGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPP------------GLGGNFAAQMAGGF 118
Query: 66 RAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPEL 125
+ G GV + P PRG G A + G Q + + GE G+ P +
Sbjct: 119 DEKAGGAQLGVMQGPMGPMG--PRGPPGPAGAPGPQGFQGNP--------GEPGE--PGV 166
Query: 126 GSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALC 185
+GP+ PPG PG G A + AG R PG +G P + L
Sbjct: 167 SGPMGPRGPPGPPGK-----------PGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLP 215
Query: 186 RVVG-------DHLLGSWLITGKDGSTQGLQQLWSPGP 216
V G D G G G + + SPGP
Sbjct: 216 GVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGP 253
Score = 35.8 bits (81), Expect = 0.037
Identities = 65/248 (26%), Positives = 72/248 (29%), Gaps = 50/248 (20%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPG GLG AQ G G L + P +G RG G A A
Sbjct: 97 PPGPPGPPGLGG--NFAAQMAGGFDEKAGGAQLGVMQGPMGPMGPRGPPGPAGAPGPQGF 154
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQS 133
+G +P P G G G GERG PP GPQ
Sbjct: 155 QGNPGEPGEPGVSGPMGPRGPPGPPGKPG--DDGEAGKPGKAGERG--PP------GPQG 204
Query: 134 RRRPPGVTS--------SLPSLDSLG--PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRA 183
R PG P LD G GV + G PG P+G P R
Sbjct: 205 ARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGVKGESGSPGENGSPGPMGPRGLPGERG 264
Query: 184 LCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLV 243
TG G+ PG PA P G G F
Sbjct: 265 R--------------TGPAGAAGARGNDGQPG-----PAGPPGPVGPAGGPGF------- 298
Query: 244 HPPPAPGA 251
P APGA
Sbjct: 299 --PGAPGA 304
Score = 35.0 bits (79), Expect = 0.062
Identities = 58/249 (23%), Positives = 81/249 (32%), Gaps = 14/249 (5%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
PPG G + P + A G GP G++ + G++G RG
Sbjct: 601 PPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDG 660
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERG-QSPPELGSDLGP 131
P+G A P + P G G G+ R + GE+G + P G
Sbjct: 661 PKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDV--GEKGPEGAPGKDGGRGL 718
Query: 132 QSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRV 187
PPG + +GP G G G PG A G P +
Sbjct: 719 TGPIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 778
Query: 188 VGDHLLGSWLITGKDGSTQGLQQLWSPGPR----IRHPAAPQGTQKGLGEDAFEERVRLV 243
G+ G G G+ +PGP+ + P +G Q G F V
Sbjct: 779 KGEQ--GEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRV 836
Query: 244 HPPPAPGAP 252
PP + G P
Sbjct: 837 GPPGSNGNP 845
Score = 34.3 bits (77), Expect = 0.11
Identities = 68/273 (24%), Positives = 81/273 (29%), Gaps = 50/273 (18%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG----------------PGDQPLLLCSVPRRSLG 57
PPG + G V P + A G PG PG + P G
Sbjct: 520 PPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAG 579
Query: 58 VRGARG--GARAVS--------------AGNP--RGVGRSARDPQTKKPRGRSGAAVSEG 99
G RG GA S G P +GV A P PRG G G
Sbjct: 580 PAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERG 639
Query: 100 SQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQ 159
S Q + L G P GP + PPG+ PG G A
Sbjct: 640 SP-GAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGM--------PGERGAAG 690
Query: 160 RTRHAGGRHRPGGAAPQGSPHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIR 219
G R G P+G+P G L G G G+ ++ PGP
Sbjct: 691 IAGPKGDRGDVGEKGPEGAPGKDG-----GRGLTGPIGPPGPAGANGEKGEVGPPGP--A 743
Query: 220 HPAAPQGTQKGLGEDAFEERVRLVHPPPAPGAP 252
A +G GE PP A G P
Sbjct: 744 GSAGARGAPGERGETGPPGPAGFAGPPGADGQP 776
Score = 32.0 bits (71), Expect = 0.53
Identities = 42/163 (25%), Positives = 54/163 (33%), Gaps = 41/163 (25%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PGA S G + P G PGP P P+ + G G +G +
Sbjct: 347 PGAKGSAGAPGIAGAP------GFPGPRGPP-----GPQGATGPLGPKGQTGEPGIAGFK 395
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSR 134
G +P P+G G A EG + G RG+ P +G +GP
Sbjct: 396 GEQGPKGEPGPAGPQGAPGPAGEEGKR--------------GARGE-PGGVGP-IGPPGE 439
Query: 135 RRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
R PG P D L AG + PG P G
Sbjct: 440 RGAPG-NRGFPGQDGL-------------AGPKGAPGERGPSG 468
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 42.0 bits (97), Expect = 5e-04
Identities = 70/252 (27%), Positives = 84/252 (33%), Gaps = 44/252 (17%)
Query: 14 PPGAVSSDGL-GAVETRPAQREAG--GGPGP----GDQPLLLCSVPRRSLGVRGARGGAR 66
PPG G GA R E G G PGP G L P S G G +GG
Sbjct: 1191 PPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1250
Query: 67 AVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELG 126
A G+P +G P P G +G A G LR L G Q P
Sbjct: 1251 A--KGDPGAIGA----PGKTGPVGPAGPAGKPGPD------GLRG-LPGSVGQQGRPGAT 1297
Query: 127 SDLGPQSRRRPPGVTSSLPSLDSLG----PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR 182
GP PPG+ + G PG G+ G + G PQGSP +
Sbjct: 1298 GQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQK 1357
Query: 183 ALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPG--PRIRHPAAPQGTQKGLGEDAFEERV 240
G I G G PG P + PA P+G + G +
Sbjct: 1358 -----------GEMGIPGASGPI-------GPGGPPGLPGPAGPKGAKGATGPGGPKGEK 1399
Query: 241 RLVHPPPAPGAP 252
+ PP PG P
Sbjct: 1400 GVQGPPGHPGPP 1411
Score = 38.5 bits (88), Expect = 0.006
Identities = 69/262 (26%), Positives = 93/262 (35%), Gaps = 40/262 (15%)
Query: 14 PPGAVSSDGLGAVETRPAQRE---AGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVS 69
PPGA DG + P +R GGPG G++ P S G RGA G
Sbjct: 885 PPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAG------ 938
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ-------SP 122
+G P G P P+G GAA +G V + + G +G P
Sbjct: 939 SGGPIG------PPGRPGPQGPPGAAGEKG--VPGEKGPIGPTGRDGVQGPVGLPGPAGP 990
Query: 123 PELGSDLGPQSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAAPQGS 178
P + + G + PG + + GP G G + AG PG PQG
Sbjct: 991 PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGH 1050
Query: 179 PHSRALCRVVGDH-------LLGSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQGTQKG 230
++ G + L G +G+ G T + + PG P R PA P G
Sbjct: 1051 FGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-- 1108
Query: 231 LGEDAFEERVRLVHPPPAPGAP 252
G V + PP G P
Sbjct: 1109 -GPQGPPGGVGNLGPPGEKGEP 1129
Score = 36.2 bits (82), Expect = 0.028
Identities = 63/232 (27%), Positives = 75/232 (32%), Gaps = 40/232 (17%)
Query: 14 PPGAVSSDGLGAVETRP-AQREAGGGPGPGDQPLLLCSVPRRSL-------GVRGARGGA 65
PPG V G A ET P +R G PGP + L + + G G G A
Sbjct: 837 PPGVVGPQG-AAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA 895
Query: 66 RAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPEL 125
RG+ +A P K G SG GS GERG +
Sbjct: 896 GLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP--------------GERGAAGS-- 939
Query: 126 GSDLGPQSR---RRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR 182
G +GP R + PPG GP G R G PG A P G
Sbjct: 940 GGPIGPPGRPGPQGPPGAAGEKGVPGEKGP--IGPTGRDGVQGPVGLPGPAGPPGVAGED 997
Query: 183 ALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGED 234
VGD G+ G+ + PGP P P G G D
Sbjct: 998 GDKGEVGD--------PGQKGTKGNKGEHGPPGP--PGPIGPVGQPGAAGAD 1039
Score = 34.7 bits (78), Expect = 0.081
Identities = 45/168 (26%), Positives = 55/168 (32%), Gaps = 35/168 (20%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG V G R + G PGP L+L P R G +G A +
Sbjct: 333 PGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLML---PFRFGSGGGDKGPVVAAQEAQAQ 389
Query: 75 GVGRSAR-----DPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL 129
+ + AR P GR G GS G +G+S DL
Sbjct: 390 AILQQARLALRGPPGPMGYTGRPGPLGQPGSP--------------GLKGES-----GDL 430
Query: 130 GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
GPQ R P G+T PG G R G R PG +G
Sbjct: 431 GPQGPRGPQGLTGP--------PGKAGRRGRAGADGARGMPGDPGVKG 470
Score = 31.6 bits (70), Expect = 0.69
Identities = 41/165 (24%), Positives = 56/165 (33%), Gaps = 25/165 (15%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
P G V G + P R G G GD+ + P +G++G G + G
Sbjct: 1026 PIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSG--EKGE 1083
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQ 132
VG P PRG +G ++G Q PP +LGP
Sbjct: 1084 TGDVGPMG-PPGPPGPRGPAGPNGADGPQ-------------------GPPGGVGNLGPP 1123
Query: 133 SRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
+ PG + S P + PG G G +PG P G
Sbjct: 1124 GEKGEPGESGS-PGIQG-EPGVKGPRGERGEKGESGQPGEPGPPG 1166
Score = 28.1 bits (61), Expect = 7.6
Identities = 44/181 (24%), Positives = 64/181 (35%), Gaps = 31/181 (17%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
P G DG+ ++ ++ G PG GD +GV+G RG
Sbjct: 633 PRGVKGVDGIRGLKGHKGEKGEDGFPGFKGD------------IGVKGDRGEV------- 673
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWL-QHARLRSCLWGGERGQSPPE--LG--- 126
GV S + + P+GR+G G + + +L G G+ P+ LG
Sbjct: 674 --GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPG 731
Query: 127 --SDLGPQSRRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSPHSRA 183
G + R G + GP G G T +G + GG P G P R
Sbjct: 732 FPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG 791
Query: 184 L 184
L
Sbjct: 792 L 792
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 42.0 bits (97), Expect = 5e-04
Identities = 70/252 (27%), Positives = 84/252 (33%), Gaps = 44/252 (17%)
Query: 14 PPGAVSSDGL-GAVETRPAQREAG--GGPGP----GDQPLLLCSVPRRSLGVRGARGGAR 66
PPG G GA R E G G PGP G L P S G G +GG
Sbjct: 1170 PPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1229
Query: 67 AVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELG 126
A G+P +G P P G +G A G LR L G Q P
Sbjct: 1230 A--KGDPGAIGA----PGKTGPVGPAGPAGKPGPD------GLRG-LPGSVGQQGRPGAT 1276
Query: 127 SDLGPQSRRRPPGVTSSLPSLDSLG----PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR 182
GP PPG+ + G PG G+ G + G PQGSP +
Sbjct: 1277 GQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQK 1336
Query: 183 ALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPG--PRIRHPAAPQGTQKGLGEDAFEERV 240
G I G G PG P + PA P+G + G +
Sbjct: 1337 -----------GEMGIPGASGPI-------GPGGPPGLPGPAGPKGAKGATGPGGPKGEK 1378
Query: 241 RLVHPPPAPGAP 252
+ PP PG P
Sbjct: 1379 GVQGPPGHPGPP 1390
Score = 38.5 bits (88), Expect = 0.006
Identities = 69/262 (26%), Positives = 93/262 (35%), Gaps = 40/262 (15%)
Query: 14 PPGAVSSDGLGAVETRPAQRE---AGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVS 69
PPGA DG + P +R GGPG G++ P S G RGA G
Sbjct: 864 PPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAG------ 917
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ-------SP 122
+G P G P P+G GAA +G V + + G +G P
Sbjct: 918 SGGPIG------PPGRPGPQGPPGAAGEKG--VPGEKGPIGPTGRDGVQGPVGLPGPAGP 969
Query: 123 PELGSDLGPQSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAAPQGS 178
P + + G + PG + + GP G G + AG PG PQG
Sbjct: 970 PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGH 1029
Query: 179 PHSRALCRVVGDH-------LLGSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQGTQKG 230
++ G + L G +G+ G T + + PG P R PA P G
Sbjct: 1030 FGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-- 1087
Query: 231 LGEDAFEERVRLVHPPPAPGAP 252
G V + PP G P
Sbjct: 1088 -GPQGPPGGVGNLGPPGEKGEP 1108
Score = 36.2 bits (82), Expect = 0.028
Identities = 63/232 (27%), Positives = 75/232 (32%), Gaps = 40/232 (17%)
Query: 14 PPGAVSSDGLGAVETRP-AQREAGGGPGPGDQPLLLCSVPRRSL-------GVRGARGGA 65
PPG V G A ET P +R G PGP + L + + G G G A
Sbjct: 816 PPGVVGPQG-AAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA 874
Query: 66 RAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPEL 125
RG+ +A P K G SG GS GERG +
Sbjct: 875 GLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP--------------GERGAAGS-- 918
Query: 126 GSDLGPQSR---RRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR 182
G +GP R + PPG GP G R G PG A P G
Sbjct: 919 GGPIGPPGRPGPQGPPGAAGEKGVPGEKGP--IGPTGRDGVQGPVGLPGPAGPPGVAGED 976
Query: 183 ALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGED 234
VGD G+ G+ + PGP P P G G D
Sbjct: 977 GDKGEVGD--------PGQKGTKGNKGEHGPPGP--PGPIGPVGQPGAAGAD 1018
Score = 34.7 bits (78), Expect = 0.081
Identities = 45/168 (26%), Positives = 55/168 (32%), Gaps = 35/168 (20%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG V G R + G PGP L+L P R G +G A +
Sbjct: 312 PGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLML---PFRFGSGGGDKGPVVAAQEAQAQ 368
Query: 75 GVGRSAR-----DPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL 129
+ + AR P GR G GS G +G+S DL
Sbjct: 369 AILQQARLALRGPPGPMGYTGRPGPLGQPGSP--------------GLKGES-----GDL 409
Query: 130 GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
GPQ R P G+T PG G R G R PG +G
Sbjct: 410 GPQGPRGPQGLTGP--------PGKAGRRGRAGADGARGMPGDPGVKG 449
Score = 31.6 bits (70), Expect = 0.69
Identities = 41/165 (24%), Positives = 56/165 (33%), Gaps = 25/165 (15%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
P G V G + P R G G GD+ + P +G++G G + G
Sbjct: 1005 PIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSG--EKGE 1062
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQ 132
VG P PRG +G ++G Q PP +LGP
Sbjct: 1063 TGDVGPMG-PPGPPGPRGPAGPNGADGPQ-------------------GPPGGVGNLGPP 1102
Query: 133 SRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
+ PG + S P + PG G G +PG P G
Sbjct: 1103 GEKGEPGESGS-PGIQG-EPGVKGPRGERGEKGESGQPGEPGPPG 1145
Score = 28.1 bits (61), Expect = 7.6
Identities = 44/181 (24%), Positives = 64/181 (35%), Gaps = 31/181 (17%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
P G DG+ ++ ++ G PG GD +GV+G RG
Sbjct: 612 PRGVKGVDGIRGLKGHKGEKGEDGFPGFKGD------------IGVKGDRGEV------- 652
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWL-QHARLRSCLWGGERGQSPPE--LG--- 126
GV S + + P+GR+G G + + +L G G+ P+ LG
Sbjct: 653 --GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPG 710
Query: 127 --SDLGPQSRRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSPHSRA 183
G + R G + GP G G T +G + GG P G P R
Sbjct: 711 FPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG 770
Query: 184 L 184
L
Sbjct: 771 L 771
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 42.0 bits (97), Expect = 5e-04
Identities = 70/252 (27%), Positives = 84/252 (33%), Gaps = 44/252 (17%)
Query: 14 PPGAVSSDGL-GAVETRPAQREAG--GGPGP----GDQPLLLCSVPRRSLGVRGARGGAR 66
PPG G GA R E G G PGP G L P S G G +GG
Sbjct: 1277 PPGEGGPRGQDGAKGDRGEDGEPGQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQGGKG 1336
Query: 67 AVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELG 126
A G+P +G P P G +G A G LR L G Q P
Sbjct: 1337 A--KGDPGAIGA----PGKTGPVGPAGPAGKPGPD------GLRG-LPGSVGQQGRPGAT 1383
Query: 127 SDLGPQSRRRPPGVTSSLPSLDSLG----PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR 182
GP PPG+ + G PG G+ G + G PQGSP +
Sbjct: 1384 GQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQK 1443
Query: 183 ALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPG--PRIRHPAAPQGTQKGLGEDAFEERV 240
G I G G PG P + PA P+G + G +
Sbjct: 1444 -----------GEMGIPGASGPI-------GPGGPPGLPGPAGPKGAKGATGPGGPKGEK 1485
Query: 241 RLVHPPPAPGAP 252
+ PP PG P
Sbjct: 1486 GVQGPPGHPGPP 1497
Score = 38.5 bits (88), Expect = 0.006
Identities = 69/262 (26%), Positives = 93/262 (35%), Gaps = 40/262 (15%)
Query: 14 PPGAVSSDGLGAVETRPAQRE---AGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVS 69
PPGA DG + P +R GGPG G++ P S G RGA G
Sbjct: 971 PPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAG------ 1024
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQ-------SP 122
+G P G P P+G GAA +G V + + G +G P
Sbjct: 1025 SGGPIG------PPGRPGPQGPPGAAGEKG--VPGEKGPIGPTGRDGVQGPVGLPGPAGP 1076
Query: 123 PELGSDLGPQSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAAPQGS 178
P + + G + PG + + GP G G + AG PG PQG
Sbjct: 1077 PGVAGEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGH 1136
Query: 179 PHSRALCRVVGDH-------LLGSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQGTQKG 230
++ G + L G +G+ G T + + PG P R PA P G
Sbjct: 1137 FGAKGDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGAD-- 1194
Query: 231 LGEDAFEERVRLVHPPPAPGAP 252
G V + PP G P
Sbjct: 1195 -GPQGPPGGVGNLGPPGEKGEP 1215
Score = 36.2 bits (82), Expect = 0.028
Identities = 63/232 (27%), Positives = 75/232 (32%), Gaps = 40/232 (17%)
Query: 14 PPGAVSSDGLGAVETRP-AQREAGGGPGPGDQPLLLCSVPRRSL-------GVRGARGGA 65
PPG V G A ET P +R G PGP + L + + G G G A
Sbjct: 923 PPGVVGPQG-AAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPA 981
Query: 66 RAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPEL 125
RG+ +A P K G SG GS GERG +
Sbjct: 982 GLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSP--------------GERGAAGS-- 1025
Query: 126 GSDLGPQSR---RRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSR 182
G +GP R + PPG GP G R G PG A P G
Sbjct: 1026 GGPIGPPGRPGPQGPPGAAGEKGVPGEKGP--IGPTGRDGVQGPVGLPGPAGPPGVAGED 1083
Query: 183 ALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGED 234
VGD G+ G+ + PGP P P G G D
Sbjct: 1084 GDKGEVGD--------PGQKGTKGNKGEHGPPGP--PGPIGPVGQPGAAGAD 1125
Score = 34.7 bits (78), Expect = 0.081
Identities = 45/168 (26%), Positives = 55/168 (32%), Gaps = 35/168 (20%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG V G R + G PGP L+L P R G +G A +
Sbjct: 419 PGPVGDPGERGPPGRAGLPGSDGAPGPPGTSLML---PFRFGSGGGDKGPVVAAQEAQAQ 475
Query: 75 GVGRSAR-----DPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDL 129
+ + AR P GR G GS G +G+S DL
Sbjct: 476 AILQQARLALRGPPGPMGYTGRPGPLGQPGSP--------------GLKGES-----GDL 516
Query: 130 GPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
GPQ R P G+T PG G R G R PG +G
Sbjct: 517 GPQGPRGPQGLTGP--------PGKAGRRGRAGADGARGMPGDPGVKG 556
Score = 31.6 bits (70), Expect = 0.69
Identities = 41/165 (24%), Positives = 56/165 (33%), Gaps = 25/165 (15%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGP-GDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
P G V G + P R G G GD+ + P +G++G G + G
Sbjct: 1112 PIGPVGQPGAAGADGEPGARGPQGHFGAKGDEGTRGFNGPPGPIGLQGLPGPSG--EKGE 1169
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQ 132
VG P PRG +G ++G Q PP +LGP
Sbjct: 1170 TGDVGPMG-PPGPPGPRGPAGPNGADGPQ-------------------GPPGGVGNLGPP 1209
Query: 133 SRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQG 177
+ PG + S P + PG G G +PG P G
Sbjct: 1210 GEKGEPGESGS-PGIQG-EPGVKGPRGERGEKGESGQPGEPGPPG 1252
Score = 28.1 bits (61), Expect = 7.6
Identities = 44/181 (24%), Positives = 64/181 (35%), Gaps = 31/181 (17%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPG-PGDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
P G DG+ ++ ++ G PG GD +GV+G RG
Sbjct: 719 PRGVKGVDGIRGLKGHKGEKGEDGFPGFKGD------------IGVKGDRGEV------- 759
Query: 73 PRGVGRSARDPQTKKPRGRSGAAVSEGSQVWL-QHARLRSCLWGGERGQSPPE--LG--- 126
GV S + + P+GR+G G + + +L G G+ P+ LG
Sbjct: 760 --GVPGSRGEDGPEGPKGRTGPTGDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPG 817
Query: 127 --SDLGPQSRRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSPHSRA 183
G + R G + GP G G T +G + GG P G P R
Sbjct: 818 FPGASGEKGARGLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERG 877
Query: 184 L 184
L
Sbjct: 878 L 878
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 41.6 bits (96), Expect = 7e-04
Identities = 66/247 (26%), Positives = 87/247 (35%), Gaps = 37/247 (14%)
Query: 14 PPGAVSSDGLGA---VETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARG--GARAV 68
PPG G ++ P GGPG + P L RG +G G R
Sbjct: 734 PPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPLMGLNPRGMQGPPGPREN 793
Query: 69 SAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSD 128
P+G+ PQ + G + G Q +R Q PP GS
Sbjct: 794 QGPAPQGM-IMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGM-------QGPPPQGSM 845
Query: 129 LG-PQSRRRPPGVTSSL-PSLDSLGPGCTGVAQRTRHAGGRHRP--GGAAPQGS-PHSRA 183
LG PQ R PPG S P SLGP G Q G+ P G QG P +
Sbjct: 846 LGPPQELRGPPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGPHPSQGPIPFQQQ 905
Query: 184 LCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLV 243
++GD G ++G + G P P I GLG+ + R+ +
Sbjct: 906 KTPLLGD---GPRAPFNQEGQSTG------PPPLI----------PGLGQQGAQGRIPPL 946
Query: 244 HPPPAPG 250
+P PG
Sbjct: 947 NPGQGPG 953
Score = 27.7 bits (60), Expect = 9.9
Identities = 53/219 (24%), Positives = 63/219 (28%), Gaps = 70/219 (31%)
Query: 37 GGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSA---GNPRGVGRSARDPQTKKPRGRSG 93
GGPGP P R RG AR G G R RDP+ + RGR
Sbjct: 1048 GGPGPPFPP------DHREFSEGDGRGAARGPPGAWEGRRPGDERFPRDPEDPRFRGRRE 1101
Query: 94 AAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGP- 152
+ G +PP R PP P + GP
Sbjct: 1102 ESFRRG---------------------APPR-------HEGRAPPRGRDGFPGPEDFGPE 1133
Query: 153 ---GCTGVAQRTRHAGGRHR--PGGAAPQGSPHSRALCRVVGDHLLGSWLITGKDGSTQG 207
+ A R R GR R P G P R G SW DG+ +
Sbjct: 1134 ENFDASEEAARGRDLRGRGRGTPRGGRKGLLPTPDEFPRFEGGRKPDSW-----DGNRE- 1187
Query: 208 LQQLWSPGPRIRHPAAPQGTQKGLGEDAFEERVRLVHPP 246
PGP G + F + R HPP
Sbjct: 1188 ------PGP---------------GHEHFRDTPRPDHPP 1205
>gi|239753715 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 40.0 bits (92), Expect = 0.002
Identities = 37/129 (28%), Positives = 45/129 (34%), Gaps = 1/129 (0%)
Query: 13 FPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
F G G G + A + G G L SVP L G G
Sbjct: 33 FGEGLEEGRGWGGRGSGSASQRPGAADLSGCSAWQLASVPATLLPSPGLESGDIPSPPLG 92
Query: 73 PRGVGRSARDPQTK-KPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGP 131
GVG AR+ + G G+ S G R R C G G P +G+ L
Sbjct: 93 VPGVGARARERRRLWLDGGEEGSESSPGQAELSMWRRRRECGHGPREGGHPNRIGAFLSL 152
Query: 132 QSRRRPPGV 140
SRRRPP +
Sbjct: 153 HSRRRPPQI 161
>gi|239748261 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 40.0 bits (92), Expect = 0.002
Identities = 37/129 (28%), Positives = 45/129 (34%), Gaps = 1/129 (0%)
Query: 13 FPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
F G G G + A + G G L SVP L G G
Sbjct: 33 FGEGLEEGRGWGGRGSGSASQRPGAADLSGCSAWQLASVPATLLPSPGLESGDIPSPPLG 92
Query: 73 PRGVGRSARDPQTK-KPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGP 131
GVG AR+ + G G+ S G R R C G G P +G+ L
Sbjct: 93 VPGVGARARERRRLWLDGGEEGSESSPGQAELSMWRRRRECGHGPREGGHPNRIGAFLSL 152
Query: 132 QSRRRPPGV 140
SRRRPP +
Sbjct: 153 HSRRRPPQI 161
>gi|239742162 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 40.0 bits (92), Expect = 0.002
Identities = 37/129 (28%), Positives = 45/129 (34%), Gaps = 1/129 (0%)
Query: 13 FPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGN 72
F G G G + A + G G L SVP L G G
Sbjct: 33 FGEGLEEGRGWGGRGSGSASQRPGAADLSGCSAWQLASVPATLLPSPGLESGDIPSPPLG 92
Query: 73 PRGVGRSARDPQTK-KPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGP 131
GVG AR+ + G G+ S G R R C G G P +G+ L
Sbjct: 93 VPGVGARARERRRLWLDGGEEGSESSPGQAELSMWRRRRECGHGPREGGHPNRIGAFLSL 152
Query: 132 QSRRRPPGV 140
SRRRPP +
Sbjct: 153 HSRRRPPQI 161
>gi|32140760 collagen, type XXVII, alpha 1 [Homo sapiens]
Length = 1860
Score = 39.3 bits (90), Expect = 0.003
Identities = 50/191 (26%), Positives = 65/191 (34%), Gaps = 42/191 (21%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG +G+ + +P Q+ G PGP P P+ S G G +G A R
Sbjct: 1363 PGYPGQEGVQGLRGKPGQQGQPGHPGPRGWP-----GPKGSKGAEGPKGKQGKAGAPGRR 1417
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSD-----L 129
GV P + GR G G G+ GQ E G D +
Sbjct: 1418 GVQGLQGLPGPRGVVGRQGLEGIAGPDGLPGR--------DGQAGQQ-GEQGDDGDPGPM 1468
Query: 130 GPQSRRRPPGVT--------------SSLPSLDSLGP-------GCTGVAQRTRHAGGRH 168
GP +R PGV S LP LGP G TG+ G +
Sbjct: 1469 GPAGKRGNPGVAGLPGAQGPPGFKGESGLPG--QLGPPGKRGTEGRTGLPGNQGEPGSKG 1526
Query: 169 RPGGAAPQGSP 179
+PG + G P
Sbjct: 1527 QPGDSGEMGFP 1537
Score = 38.5 bits (88), Expect = 0.006
Identities = 39/137 (28%), Positives = 49/137 (35%), Gaps = 38/137 (27%)
Query: 52 PRRSLGVRGARGGARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRS 111
P+ S+G G GG P+G S P + +GR G +G
Sbjct: 1025 PKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRGAKGRRGPRGPDGP----------- 1073
Query: 112 CLWGGERG----QSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGR 167
GE+G + PP GPQ R PG PG GVA H G R
Sbjct: 1074 ---AGEQGSRGLKGPP------GPQGR---PG-----------RPGQQGVAGERGHLGSR 1110
Query: 168 HRPGGAAPQGSPHSRAL 184
PG P G P ++ L
Sbjct: 1111 GFPGIPGPSGPPGTKGL 1127
Score = 30.4 bits (67), Expect = 1.5
Identities = 66/249 (26%), Positives = 81/249 (32%), Gaps = 43/249 (17%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG + G E + A G PGP Q P G G G +
Sbjct: 912 PGDIGPPGDNGPEGMKGKPGARGLPGPRGQ-----LGPEGDEGPMGPPGAPGLEGQPGRK 966
Query: 75 GV-GRSARDPQTKKPR--GRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGP 131
G GR D +P GR G +G ++ G G+ P + + G
Sbjct: 967 GFPGRPGLDGVKGEPGDPGRPGPVGEQGFMGFI-----------GLVGE--PGIVGEKGD 1013
Query: 132 QSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVGDH 191
+ PPGV PG G GG PG PQG P SR + G
Sbjct: 1014 RGMMGPPGV-----------PGPKGSMGHPGMPGGMGTPGEPGPQGPPGSRGPPGMRG-- 1060
Query: 192 LLGSWLITGKDG--STQGLQQL-WSPGPRIRHPAAP-----QGTQKGLGEDAFEERVRLV 243
G G DG QG + L PGP+ R P P G + LG F
Sbjct: 1061 AKGRRGPRGPDGPAGEQGSRGLKGPPGPQGR-PGRPGQQGVAGERGHLGSRGFPGIPGPS 1119
Query: 244 HPPPAPGAP 252
PP G P
Sbjct: 1120 GPPGTKGLP 1128
Score = 29.6 bits (65), Expect = 2.6
Identities = 46/181 (25%), Positives = 58/181 (32%), Gaps = 27/181 (14%)
Query: 16 GAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPRG 75
G + GL P ++ G PGP P G G G A +G
Sbjct: 691 GDMGLPGLSGNPGPPGRKGHKGYPGPAGHP--------GEQGQPGPEGSPGAKGYPGRQG 742
Query: 76 VGRSARDPQTKKPRGRSG--------AAVSEGSQVWLQHARLRSCLWG-----GERGQSP 122
+ DP K RG G + E + R + + G GERG P
Sbjct: 743 LPGPVGDPGPKGSRGYIGLPGLFGLPGSDGERGLPGVPGKRGKMGMPGFPGVFGERG--P 800
Query: 123 PELGSDLGPQSRRRPPGVTSSLPSLDSLG----PGCTGVAQRTRHAGGRHRPGGAAPQGS 178
P L + G PPGV + L LG PG G+ G G QG
Sbjct: 801 PGLDGNPGELGLPGPPGVPGLIGDLGVLGPIGYPGPKGMKGLMGSVGEPGLKGDKGEQGV 860
Query: 179 P 179
P
Sbjct: 861 P 861
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 39.3 bits (90), Expect = 0.003
Identities = 56/205 (27%), Positives = 68/205 (33%), Gaps = 20/205 (9%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG S GL + R G G P L P SL +GARG A
Sbjct: 316 PGQKGSRGLDGYQGPDGPRGPKGEAGDPGPPGLPAYSPHPSLA-KGARGDPGFPGAQGEP 374
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSR 134
G DP P G S + +G Q + + G+ G P G GP +
Sbjct: 375 GSQGEPGDPGLPGPPGLS---IGDGDQRRGLPGEMGPKGFIGDPG-IPALYGGPPGPDGK 430
Query: 135 RRPPGVTS--SLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVGDHL 192
R PPG P D G G R G PG P+G CR
Sbjct: 431 RGPPGPPGLPGPPGPDGFLFGLKGAKGRAGFPGLPGSPGARGPKGWKGDAGECR------ 484
Query: 193 LGSWLITGKDGSTQGLQQLWSPGPR 217
T D + +GL L PGP+
Sbjct: 485 -----CTEGDEAIKGLPGL--PGPK 502
Score = 39.3 bits (90), Expect = 0.003
Identities = 68/258 (26%), Positives = 96/258 (37%), Gaps = 36/258 (13%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPG----PG-DQPLLLCSVPRRSLGVRGARGGARAVS 69
PG V G + P +R G PG PG P + P G +GA G
Sbjct: 1238 PGPVGVPGQKGDQGAPGERGPPGSPGLQGFPGITPPSNISGAP----GDKGAPGIFGLKG 1293
Query: 70 AGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHA--RLRSCLWG--GERG------ 119
P G SA P +K G GA + G++ W + + R ++G GE+G
Sbjct: 1294 YRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGLPGEKGPRGEQG 1353
Query: 120 ----QSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRP-GGAA 174
P D GP+ + PG + ++ + PG G+ Q+ G P G
Sbjct: 1354 FMGNTGPTGAVGDRGPKGPKGDPGFPGAPGTVGA--PGIAGIPQKIAVQPGTVGPQGRRG 1411
Query: 175 PQGSPHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPAAPQGTQKGLGED 234
P G+P G+ G GK G QG + S P R P G Q +G++
Sbjct: 1412 PPGAPGEMGPQGPPGEP--GFRGAPGKAG-PQGRGGV-SAVPGFRGDEGPIGHQGPIGQE 1467
Query: 235 AFEERVRLVHPPPAPGAP 252
R P +PG P
Sbjct: 1468 GAPGR------PGSPGLP 1479
Score = 34.3 bits (77), Expect = 0.11
Identities = 45/168 (26%), Positives = 53/168 (31%), Gaps = 31/168 (18%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPG + GL + P A GGPGP P G G G P
Sbjct: 694 PPGPTGAKGLRGI---PGFAGADGGPGPRGLP-----------GDAGREGFPGPPGFIGP 739
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQS 133
RG + P G G +G GERG LG+ GP+
Sbjct: 740 RGSKGAVGLPGPDGSPGPIGLPGPDGPP--------------GERGLPGEVLGAQPGPRG 785
Query: 134 RRRPPGV--TSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSP 179
PG LP D PG G G + +PG P G P
Sbjct: 786 DAGVPGQPGLKGLPG-DRGPPGFRGSQGMPGMPGLKGQPGLPGPSGQP 832
Score = 32.0 bits (71), Expect = 0.53
Identities = 41/165 (24%), Positives = 56/165 (33%), Gaps = 16/165 (9%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PG G + P ++ G PG P G G +G + A P+
Sbjct: 496 PGLPGPKGFAGINGEPGRKGDRGDPGQHGLP-----------GFPGLKGVPGNIGAPGPK 544
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSR 134
G +R TK RG+ G G + + R L G PP G GP
Sbjct: 545 GAKGDSRTITTKGERGQPGVPGVPGMK-GDDGSPGRDGLDGFPGLPGPPGDGIK-GPPGD 602
Query: 135 RRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRPGGAAPQGSP 179
PG+ + + +GP G+ G R PG A G P
Sbjct: 603 PGYPGIPGTKGTPGEMGPPGLGLPGL---KGQRGFPGDAGLPGPP 644
Score = 31.2 bits (69), Expect = 0.90
Identities = 50/185 (27%), Positives = 62/185 (33%), Gaps = 48/185 (25%)
Query: 53 RRSLGVRGARG--GARAVSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLR 110
R + GV G +G GAR VS G P G P PRGR G G+Q
Sbjct: 93 RGAPGVTGPKGDVGARGVS-GFPGADGIPGH-PGQGGPRGRPGYDGCNGTQ--------- 141
Query: 111 SCLWGGERGQSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTRHAGGRHRP 170
G Q PP GP + P G P +R R+ G P
Sbjct: 142 ----GDSGPQGPPGSEGFTGPPGPQGPKGQKGE--------PYALPKEERDRYRGEPGEP 189
Query: 171 GGAAPQGSPHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPG-PRIRHPAAPQGTQ- 228
G QG P G+ G + + +PG P P P+G Q
Sbjct: 190 GLVGFQGPP--------------------GRPGHVGQMGPVGAPGRPGPPGPPGPKGQQG 229
Query: 229 -KGLG 232
+GLG
Sbjct: 230 NRGLG 234
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 38.9 bits (89), Expect = 0.004
Identities = 56/242 (23%), Positives = 76/242 (31%), Gaps = 46/242 (19%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPG + + G + P + G PG G P P+ G +G G + A P
Sbjct: 1271 PPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPP-----GPKGERGEKGESGPSGAAGPPGP 1325
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQS 133
+G P P+G G G PP + GP
Sbjct: 1326 KG------PPGDDGPKGSPGPVGFPGD-------------------PGPP---GEPGPAG 1357
Query: 134 RRRPPGVTSSLPSLDSLG-PGCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVGDHL 192
+ PPG G PG TG + G R PG A P+G + G
Sbjct: 1358 QDGPPGDKGDDGEPGQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAG--- 1414
Query: 193 LGSWLITGKDGSTQGLQQLWSPG----PRIRHPAAPQGTQKGLGEDAFEERVRLVHPPPA 248
+ G G T + +PG +R P G Q G + + PP
Sbjct: 1415 -----LEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGL 1469
Query: 249 PG 250
PG
Sbjct: 1470 PG 1471
Score = 34.3 bits (77), Expect = 0.11
Identities = 65/239 (27%), Positives = 85/239 (35%), Gaps = 34/239 (14%)
Query: 8 FKSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARA 67
F R PG V + GL E P G PGP P G GA G
Sbjct: 1058 FPGDRGLPGPVGALGLKGNEGPP------GPPGPAGSP--------GERGPAGAAGPIGI 1103
Query: 68 VSAGNPRGVGRSARDPQTKKPRGRSGAAVSEGSQ--VWLQHARLRSCLWG--GERGQ--S 121
P+G A + +G G A +G Q V L G G++G+
Sbjct: 1104 PGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGE 1163
Query: 122 PPELGSDLGPQSRRRPPGVTSSLPSLDSLGP-GCTGVAQRTRHAGGRHRPGGAAPQGSPH 180
P + GS G + + PPG T + GP G G G + G P+G P
Sbjct: 1164 PGQKGSK-GDKGEQGPPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPG 1222
Query: 181 SRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPG-PRIRHPA------APQGTQKGLG 232
+ G L G G+ G T + Q+ PG P R P+ PQG G+G
Sbjct: 1223 PPGPVGLQG--LPGP---PGEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIG 1276
Score = 30.8 bits (68), Expect = 1.2
Identities = 61/219 (27%), Positives = 71/219 (32%), Gaps = 26/219 (11%)
Query: 15 PGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPR 74
PGA G E P ++ G PGP Q + PR G G RG
Sbjct: 756 PGADGPPGHPGKEGPPGEKGGQGPPGP--QGPIGYPGPRGVKGADGIRGLKGTKGEKGED 813
Query: 75 GVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSR 134
G D K RG G G + + R GG G P LGP
Sbjct: 814 GFPGFKGDMGIKGDRGEIGPPGPRGED-GPEGPKGR----GGPNGDPGP-----LGPPGE 863
Query: 135 RRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGGAAPQGSPHSRALCRVVGD 190
+ GV GP G G GGR PG P+G R G+
Sbjct: 864 KGKLGVPGLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRG---QRGPTGPRGE 920
Query: 191 HLLGSWLITGK---DGSTQGLQQLWSPGPRIRHPAAPQG 226
G ITGK G++ G PG R P PQG
Sbjct: 921 R--GPRGITGKPGPKGNSGGDGPAGPPGE--RGPNGPQG 955
Score = 30.4 bits (67), Expect = 1.5
Identities = 41/168 (24%), Positives = 51/168 (30%), Gaps = 28/168 (16%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNP 73
PPG G+ + P ++ G G P G G +GG P
Sbjct: 860 PPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFP-----------GANGEKGGRGTPGKPGP 908
Query: 74 RGVGRSARDPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQS 133
RG + PRG +G +G+ GG+ PP GPQ
Sbjct: 909 RGQRGPTGPRGERGPRGITGKPGPKGNS-------------GGDGPAGPPGERGPNGPQG 955
Query: 134 RRRPPGVTS--SLPSLDSL--GPGCTGVAQRTRHAGGRHRPGGAAPQG 177
PG P D L PG G G PG PQG
Sbjct: 956 PTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQG 1003
Score = 29.3 bits (64), Expect = 3.4
Identities = 68/264 (25%), Positives = 79/264 (29%), Gaps = 56/264 (21%)
Query: 14 PPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRR--SLGVRGARGGARAVSAG 71
P G V G RP A G PGP L+L P R G G++G +
Sbjct: 488 PTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLML---PFRFGGGGDAGSKGPMVSAQES 544
Query: 72 NPRGVGRSAR--------------DPQTKKPRGRSGAAVSEGSQVWLQHARLRSCLWGGE 117
+ + + AR P P G SG E V Q G
Sbjct: 545 QAQAILQQARLALRGPAGPMGLTGRPGPVGPPG-SGGLKGEPGDVGPQ----------GP 593
Query: 118 RG-QSPPELGSDLGPQSRRRPPGVTSSLPSLDSLGP----GCTGVAQRTRHAGGRHRPGG 172
RG Q PP G RR G + GP G G+A G R PG
Sbjct: 594 RGVQGPP---GPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGP 650
Query: 173 AAPQGSPHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPR----IRHPAAPQGTQ 228
+ P G P G G DG PGPR + P P G
Sbjct: 651 SGPPGPP--------------GDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPP 696
Query: 229 KGLGEDAFEERVRLVHPPPAPGAP 252
G D V P PG P
Sbjct: 697 GVTGMDGQPGPKGNVGPQGEPGPP 720
Score = 29.3 bits (64), Expect = 3.4
Identities = 65/271 (23%), Positives = 80/271 (29%), Gaps = 54/271 (19%)
Query: 9 KSKRFPPGAVSSDGLGAVETRPAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAV 68
+ +R P G G + +P + GG GP P G RG G
Sbjct: 909 RGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPP-----------GERGPNGPQGPT 957
Query: 69 SAGNPRG-VGRSARD--PQTKKPRGRSGAAVSEGSQ----VWLQHARLRSCLWGGERGQS 121
P+G G +D P RG +G G V GERG
Sbjct: 958 GFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHP 1017
Query: 122 PPELGSDLGPQSRRRPPGVTSSLPSLDSLGP-------------------GCTGVAQRTR 162
P GP + PG+ + GP G G
Sbjct: 1018 GPP-----GPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALG 1072
Query: 163 HAGGRHRPGGAAPQGSPHSRALCRVVGDHLLGSWLITGKDGSTQGLQQLWSPGPRIRHPA 222
G PG P GSP R G +G I G+ G QG PGP A
Sbjct: 1073 LKGNEGPPGPPGPAGSPGERGPAGAAGP--IG---IPGRPG-PQG-----PPGPAGEKGA 1121
Query: 223 -APQGTQKGLGEDAFEERVRLVHPPPAPGAP 252
+G Q G D + V L P G P
Sbjct: 1122 PGEKGPQGPAGRDGLQGPVGLPGPAGPVGPP 1152
>gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo
sapiens]
Length = 485
Score = 38.9 bits (89), Expect = 0.004
Identities = 41/173 (23%), Positives = 59/173 (34%), Gaps = 34/173 (19%)
Query: 88 PRGRSGAAVSEGSQVWLQHARLRSCLW------------------------GGERGQSPP 123
P GR+ A E W H + LW GG+R P
Sbjct: 176 PEGRTVAKCRENWSQWTGHWSQWTGLWYHEPPTGSLISSSSPGPPSQALQLGGDRYHRAP 235
Query: 124 ELGSDLGPQSRRRPPGVTSSLPSLDSLGPGCTGVAQRTR-HAGGRHRPGGAAPQGSPHSR 182
L + L P++ RRP +P+ PG +R A G HR + P+ SP +
Sbjct: 236 SLCTAL-PKAMRRPEKTGEGIPATTRSAPGSRSARRREDPRAPGAHRACSSCPRDSPST- 293
Query: 183 ALCRVVGDHLLGSWLITGKDGSTQGLQ------QLWSPGPRIRHPAAPQGTQK 229
LC G L+ + + W PGPR H + G+ +
Sbjct: 294 -LCSAFGAGLVSASRAWDPPSCSHENHLWGRACHQWDPGPRHFHRSLRSGSSE 345
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 38.9 bits (89), Expect = 0.004
Identities = 39/124 (31%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 30 PAQREAGGGPGPGDQPLLLCSVPRRSLGVRGARGGARAVSAGNPRGVGRSARDPQTKKPR 89
P + G PGPGD+ ++ RR G G GA +S G RG R+A + +P
Sbjct: 30 PGRGRRGPRPGPGDEAAP--ALGRRGKGSGGPEAGADGLSRGE-RGPRRAAVPELSAQPA 86
Query: 90 G--RSGAAVSEGSQVWLQHARLRSCLWGGERGQSPPELGSDLGPQSRRRPPGVTSSLPSL 147
G R+ A S+G AR G ++ P G P+ PP V S+ S+
Sbjct: 87 GSPRASLAGSDGGGGG-GSARSSGISLGYDQRHGSPRSGRS-DPRPGPGPPSVGSARSSV 144
Query: 148 DSLG 151
SLG
Sbjct: 145 SSLG 148
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,698,439
Number of Sequences: 37866
Number of extensions: 938700
Number of successful extensions: 3866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 398
Number of HSP's that attempted gapping in prelim test: 3238
Number of HSP's gapped (non-prelim): 853
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.