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Search of human proteins with 239742745
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo
sapiens]
(248 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo ... 504 e-143
gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo ... 429 e-120
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 54 2e-07
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 51 8e-07
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 50 2e-06
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 50 2e-06
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 49 5e-06
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 49 5e-06
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 48 9e-06
gi|188536004 zinc finger protein 469 [Homo sapiens] 47 2e-05
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 46 3e-05
gi|91208420 bassoon protein [Homo sapiens] 46 3e-05
gi|237757308 synaptojanin 1 isoform b [Homo sapiens] 45 4e-05
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 45 4e-05
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso... 45 4e-05
gi|33286446 opioid growth factor receptor [Homo sapiens] 45 8e-05
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 45 8e-05
gi|169215850 PREDICTED: transmembrane protein 46-like [Homo sapi... 45 8e-05
gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens] 45 8e-05
gi|51873055 fibulin 2 isoform b precursor [Homo sapiens] 45 8e-05
gi|51873053 fibulin 2 isoform a precursor [Homo sapiens] 45 8e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 44 1e-04
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 44 2e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 44 2e-04
gi|239749498 PREDICTED: hypothetical protein [Homo sapiens] 44 2e-04
gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo ... 44 2e-04
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 44 2e-04
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens] 43 3e-04
gi|195963410 MEF2 activating motif and SAP domain containing tra... 43 3e-04
gi|32698970 MEF2 activating motif and SAP domain containing tran... 43 3e-04
>gi|239742745 PREDICTED: hypothetical protein XP_002342616 [Homo
sapiens]
Length = 248
Score = 504 bits (1299), Expect = e-143
Identities = 248/248 (100%), Positives = 248/248 (100%)
Query: 1 MASSKLEVNSREISTQVHTSYLQNGGQSRGSRGRPPGRALRRGSCARGEKRPPGPTGGQW 60
MASSKLEVNSREISTQVHTSYLQNGGQSRGSRGRPPGRALRRGSCARGEKRPPGPTGGQW
Sbjct: 1 MASSKLEVNSREISTQVHTSYLQNGGQSRGSRGRPPGRALRRGSCARGEKRPPGPTGGQW 60
Query: 61 RWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGK 120
RWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGK
Sbjct: 61 RWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGK 120
Query: 121 HLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQ 180
HLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQ
Sbjct: 121 HLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQ 180
Query: 181 RPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGRG 240
RPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGRG
Sbjct: 181 RPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGRG 240
Query: 241 RVINGSVT 248
RVINGSVT
Sbjct: 241 RVINGSVT 248
>gi|239748716 PREDICTED: hypothetical protein XP_002346782 [Homo
sapiens]
Length = 267
Score = 429 bits (1102), Expect = e-120
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 40 LRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSST 99
LRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSST
Sbjct: 59 LRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSST 118
Query: 100 SQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPL 159
SQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPL
Sbjct: 119 SQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPL 178
Query: 160 LQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSID 219
LQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSID
Sbjct: 179 LQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSID 238
Query: 220 REEGGPRQAPQGAGHALEGRGRVINGSVT 248
REEGGPRQAPQGAGHALEGRGRVINGSVT
Sbjct: 239 REEGGPRQAPQGAGHALEGRGRVINGSVT 267
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 53.5 bits (127), Expect = 2e-07
Identities = 62/225 (27%), Positives = 83/225 (36%), Gaps = 25/225 (11%)
Query: 25 GGQSRGSR---GRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRA 81
G +SR R G+P G + G+ +G PPG G G + RP G PQ
Sbjct: 84 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN-RPQGPPPPGKPQGPP 142
Query: 82 ARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRG----GVPARRRE 137
+G + R R+ G Q G+ GK P G G P +
Sbjct: 143 PQGDKSRSPRSPPGKP---QGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKP 199
Query: 138 TANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPP--PAGSAARSGR 195
PP ++R SP G +P P Q +PQ P PP P G + G
Sbjct: 200 QGPPPQGDKSRSSQSPPG-KPQGPPPQ---------GGNQPQGPPPPPGKPQGPPPQGGN 249
Query: 196 RAQRPGRKRSPQSAPAESGELSIDREE--GGPRQAPQGAGHALEG 238
+ Q P PQ PA+ G S G P+ PQ G+ +G
Sbjct: 250 KPQGPPPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQG 294
Score = 47.8 bits (112), Expect = 9e-06
Identities = 54/206 (26%), Positives = 74/206 (35%), Gaps = 18/206 (8%)
Query: 33 GRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRA 92
G P G + + G+ +G PPG G G + +P G PQ +G + R R+
Sbjct: 34 GNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGN-KPQGPPPPGKPQGPPPQGDKSRSPRS 92
Query: 93 EAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGS 152
G Q G+ GK P G P PP PG+ + G
Sbjct: 93 PPGKP---QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQ------GPPPPGKPQ-GPP 142
Query: 153 PFGHR---PLLQPRQIFAPLQAITNQVRPQQRPEPP--PAGSAARSGRRAQRPGRKRSPQ 207
P G + P P + P NQ PQ P PP P G + G++ Q P PQ
Sbjct: 143 PQGDKSRSPRSPPGKPQGPPPQGGNQ--PQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQ 200
Query: 208 SAPAESGELSIDREEGGPRQAPQGAG 233
P + + + G Q P G
Sbjct: 201 GPPPQGDKSRSSQSPPGKPQGPPPQG 226
Score = 39.7 bits (91), Expect = 0.002
Identities = 49/193 (25%), Positives = 64/193 (33%), Gaps = 16/193 (8%)
Query: 25 GGQSRGSR---GRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRA 81
G +SR R G+P G + G+ +G PPG G G +P G PQ
Sbjct: 145 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQG-GKKPQGPPPPGKPQGPP 203
Query: 82 ARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANP 141
+G + R ++ G Q G+ GK P G P P
Sbjct: 204 PQGDKSRSSQSPPGKP---QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 260
Query: 142 PGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQ-------QRPEPPPAGSAARSG 194
GP S P +P+ P Q N P Q+P+ PPAG
Sbjct: 261 QGPPAQGGSKSQSARSPPGKPQG--PPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQGPP 318
Query: 195 RRAQRPGRKRSPQ 207
R Q R PQ
Sbjct: 319 RPPQGGRPSRPPQ 331
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 51.2 bits (121), Expect = 8e-07
Identities = 57/232 (24%), Positives = 85/232 (36%), Gaps = 17/232 (7%)
Query: 1 MASSKLEVNSREISTQVHTSYLQNGGQSRGSRGRPPGRALRRGSCARGEKRPPGPTGGQW 60
+A S E +S ++S + + + R +G G +R G+ + P P GG
Sbjct: 11 LALSSAESSSEDVSQEESLFLISGKPEGRRPQG---GNQPQRPPPPPGKPQGPPPQGGNQ 67
Query: 61 RWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGK 120
G P P G P+ R +G +G H ++ G+ + T GK
Sbjct: 68 SQGPPPPP------GKPEGRPPQGGNQSQGPPP--HPGKPERPPPQGGNQSQGTPPPPGK 119
Query: 121 HLAVPETRGGVPARRRETANPPG-PGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQ 179
P +GG + R PPG P R P G P P + P N+ R
Sbjct: 120 PER-PPPQGGNQSHRPPP--PPGKPERPPPQGGNQSQGPPPHPGKPEGPPPQEGNKSRSA 176
Query: 180 QRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQG 231
+ P P G + G + Q P PQ P G + + + P PQG
Sbjct: 177 RSPPGKPQGPPQQEGNKPQGPPPPGKPQGPPPAGG--NPQQPQAPPAGKPQG 226
Score = 42.0 bits (97), Expect = 5e-04
Identities = 50/197 (25%), Positives = 69/197 (35%), Gaps = 33/197 (16%)
Query: 23 QNGGQSRGSR---GRPPGRALRRGSCARGEKRPPG------PTGGQWRWGVSPRPSAASA 73
Q G QS+G G+P GR + G+ ++G PG P GG G P P
Sbjct: 63 QGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPER 122
Query: 74 TGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPA 133
P + G+ E + G+ + GK P G
Sbjct: 123 PPPQGGNQSHRPPPPPGKPE--------RPPPQGGNQSQGPPPHPGKPEGPPPQEGN--- 171
Query: 134 RRRETANPPGPGRARP---GGSPFGHRPLLQPRQIFAPLQAITNQVRPQ-------QRPE 183
+ R +PPG + P G P G P +P+ P A N +PQ Q P
Sbjct: 172 KSRSARSPPGKPQGPPQQEGNKPQGPPPPGKPQ---GPPPAGGNPQQPQAPPAGKPQGPP 228
Query: 184 PPPAGSAARSGRRAQRP 200
PPP G + Q+P
Sbjct: 229 PPPQGGRPPRPAQGQQP 245
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 50.1 bits (118), Expect = 2e-06
Identities = 67/243 (27%), Positives = 93/243 (38%), Gaps = 40/243 (16%)
Query: 14 STQVHTSYLQNGGQSRGS-RGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAAS 72
S + + Y + SR S + R GR + GS R P P+GG WG SP+ + S
Sbjct: 262 SPSLSSHYSDSRSPSRLSPKHRDEGR--KTGSQRSSGSRSPSPSGGSG-WG-SPQRNGGS 317
Query: 73 ATGPPQDRAARGCELREGRAEAGHSSTSQKDTLS-----KGSAAAATAVAAGKHLAVPET 127
Q A G GR + HS + + S K +AAA T A GK P
Sbjct: 318 G----QRSGAHG-----GRPGSAHSPPDKPSSPSPRVRDKAAAAAPTPPARGKESPSP-- 366
Query: 128 RGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPA 187
R + G G GG+ G R + R+ + A + R ++RP P P
Sbjct: 367 --------RSAPSSQGRGGRAAGGA--GRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPP 416
Query: 188 GSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGG---------PRQAPQGAGHALEG 238
++RS RA+ S + AP E +R GG PR P +
Sbjct: 417 RGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGA 476
Query: 239 RGR 241
GR
Sbjct: 477 HGR 479
Score = 43.5 bits (101), Expect = 2e-04
Identities = 58/249 (23%), Positives = 87/249 (34%), Gaps = 36/249 (14%)
Query: 4 SKLEVNSREISTQVHTSYLQNGGQSRGSRGRPPGRALRRGSCARGEKRP----PGPTGGQ 59
S + ++ S + H + G R R R +R + +KRP PG +
Sbjct: 195 SSSPLRKKKKSVKKHRRDRSDSGSRRKRRHRSRSSKCKRKEKNKEKKRPHTESPGRRSHR 254
Query: 60 WRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAG 119
G S PS +S + + R H +K + S + + + + G
Sbjct: 255 HSSGSSHSPSLSSHYSDSRSPS---------RLSPKHRDEGRKTGSQRSSGSRSPSPSGG 305
Query: 120 KHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQ 179
P+ GG R PG + P P P ++ + A A T R +
Sbjct: 306 SGWGSPQRNGGSGQRSGAHGGRPGSAHS-PPDKPSSPSPRVRDK---AAAAAPTPPARGK 361
Query: 180 QRPEP-----------PPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQA 228
+ P P AG A R RR +R R RS SAP G PR A
Sbjct: 362 ESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRRRGRRR-------PRPA 414
Query: 229 -PQGAGHAL 236
P+G+ +L
Sbjct: 415 PPRGSSRSL 423
Score = 40.8 bits (94), Expect = 0.001
Identities = 56/223 (25%), Positives = 77/223 (34%), Gaps = 43/223 (19%)
Query: 24 NGGQSRGSRGRPP-GRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAA 82
+GG + ++ RPP R R GP G P P + S++ P +
Sbjct: 451 HGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRS 510
Query: 83 RGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPP 142
R E R + S S K LS+ A +H TR ARRR + P
Sbjct: 511 RSAEKRP---HSPSRSPSPKKPLSRDKDGEGRA----RHSEAEATR----ARRRSRSYSP 559
Query: 143 GPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGS------AARSGRR 196
R R S ++PR+I + + P RP P + S + RS R
Sbjct: 560 IRKRRRDSPS------FMEPRRI----TSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSR 609
Query: 197 AQRPG---------------RKRSPQSAPAESGELSIDREEGG 224
+ PG R RSP P+ S E GG
Sbjct: 610 SPSPGHSHGSYSSRSHGTRSRTRSPSRTPSPSYHSRSSSESGG 652
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 49.7 bits (117), Expect = 2e-06
Identities = 69/247 (27%), Positives = 103/247 (41%), Gaps = 35/247 (14%)
Query: 4 SKLEVNSREISTQVHTSYLQNGG-----QSRG--SRGRPPGRALRRGSCARGEKRPPG-- 54
SK SR +ST TS Q RG SRGR PGR RGS R KR P
Sbjct: 86 SKARTPSR-VSTDTRTSKASKASDVRCHQRRGTHSRGRTPGR---RGS--RSSKRSPSRA 139
Query: 55 PTGGQWRW-GVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGS--AA 111
T G+ R G P ++ T Q + +RG R S SQ LSK S
Sbjct: 140 STPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQPRNLSKKSYRPP 199
Query: 112 AATAVAAGKHLAVP------ETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQI 165
+ + LAV +T G+P+ +E ++ P P +R S +G + +
Sbjct: 200 GGSGIGRSSELAVTPSTAKCQTPTGIPS--KEKSDNPSPSSSRKVKS-YGQMIIPSREKS 256
Query: 166 FAPLQAIT-----NQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDR 220
++P + + NQ + RP+ + S +RS RR++ +KR+ + S + + R
Sbjct: 257 YSPTEMSSRVKSYNQASTRSRPQ---SHSQSRSPRRSRSGSQKRTHSRVRSHSWKRNHSR 313
Query: 221 EEGGPRQ 227
R+
Sbjct: 314 ARSRTRK 320
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 48.5 bits (114), Expect = 5e-06
Identities = 59/228 (25%), Positives = 82/228 (35%), Gaps = 25/228 (10%)
Query: 23 QNGGQSRGSR---GRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQD 79
Q +SR SR G+P G + G+ +G PPG G G + +P G PQ
Sbjct: 165 QGDNKSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN-KPQGPPPPGKPQG 223
Query: 80 RAARGCELREGRAEAGHSSTS--QKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRE 137
+G + ++++ S Q G+ GK P G P
Sbjct: 224 PPPQG----DNKSQSARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQ---- 275
Query: 138 TANPPGPGRAR---PGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPP--PAGSAAR 192
PP PG+ + P G P + P NQ PQ P PP P G +
Sbjct: 276 --GPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQ--PQGPPPPPGKPQGPPPQ 331
Query: 193 SGRRAQRPGRKRSPQSAPAESGELSIDREE--GGPRQAPQGAGHALEG 238
G + Q P PQ P + G S G P+ PQ G+ +G
Sbjct: 332 GGNKPQGPPPPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQG 379
Score = 47.8 bits (112), Expect = 9e-06
Identities = 56/212 (26%), Positives = 72/212 (33%), Gaps = 15/212 (7%)
Query: 25 GGQSRGSR---GRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRA 81
G +SR R G+P G + G+ +G PPG G G + +P G PQ
Sbjct: 105 GDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGN-KPQGPPPPGKPQGPP 163
Query: 82 ARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANP 141
+G + R+ Q G+ GK P G P P
Sbjct: 164 PQGDN--KSRSSRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 221
Query: 142 PGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPP--PAGSAARSGRRAQR 199
GP S P +P+ P NQ PQ P PP P G + G + Q
Sbjct: 222 QGPPPQGDNKSQSARSPPGKPQ---GPPPQGGNQ--PQGPPPPPGKPQGPPPQGGNKPQG 276
Query: 200 PGRKRSPQSAPAESGELSIDREEGGPRQAPQG 231
P PQ P + G S R P PQG
Sbjct: 277 PPPPGKPQGPPPQGGSKS--RSSRSPPGKPQG 306
Score = 42.7 bits (99), Expect = 3e-04
Identities = 57/235 (24%), Positives = 75/235 (31%), Gaps = 42/235 (17%)
Query: 33 GRPPGRALRRGSCARGEKRPPG------PTGGQWRWGVSP--------------RPSAAS 72
G P G + G+ +G PPG P GG G P +P
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPP 93
Query: 73 ATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVP 132
G PQ +G + R R+ G Q G+ GK P G P
Sbjct: 94 PPGKPQGPPPQGDKSRSPRSPPG---KPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKP 150
Query: 133 ARRRETANPPGP-----GRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPP-- 185
P GP ++R SP G +P P Q +PQ P PP
Sbjct: 151 QGPPPPGKPQGPPPQGDNKSRSSRSPPG-KPQGPPPQ---------GGNQPQGPPPPPGK 200
Query: 186 PAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREE--GGPRQAPQGAGHALEG 238
P G + G + Q P PQ P + S G P+ P G+ +G
Sbjct: 201 PQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQG 255
Score = 38.5 bits (88), Expect = 0.005
Identities = 47/178 (26%), Positives = 62/178 (34%), Gaps = 41/178 (23%)
Query: 23 QNGGQSRGSR--GRPPGRALRRGSCARGEKRPPG------PTGGQWRWGVSPRPSAASAT 74
Q G + +G G+P G + GS +R + PPG P GG G P P
Sbjct: 269 QGGNKPQGPPPPGKPQGPPPQGGSKSRSSRSPPGKPQGPPPQGGNQPQGPPPPP------ 322
Query: 75 GPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPAR 134
G PQ +G +G G Q GS + + GK P+ G P
Sbjct: 323 GKPQGPPPQGGNKPQGPPPPG---KPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNP-- 377
Query: 135 RRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAAR 192
PP P GG+P +P P +PQ P PP G +R
Sbjct: 378 ----QGPPPPA----GGNP--QQPQAPPAG------------QPQGPPRPPQGGRPSR 413
Score = 37.7 bits (86), Expect = 0.009
Identities = 52/190 (27%), Positives = 67/190 (35%), Gaps = 18/190 (9%)
Query: 28 SRGSRGRPPGRALRRGSCARGEKRPPG-PTGGQWRWGVSPR--PSAASATGPPQDRAARG 84
+R G+P G + G+ +G PPG P G + G P+ P GPP G
Sbjct: 235 ARSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQG---G 291
Query: 85 CELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGP 144
+ R R+ G Q G+ GK P G P P GP
Sbjct: 292 SKSRSSRSPPGKP---QGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGP 348
Query: 145 -----GRARPGGSPFGHRPLLQPRQIFAPLQAITNQV--RPQQRPEPPPAGSAARSGRRA 197
++R SP G +P P+Q Q PQQ P+ PPAG R
Sbjct: 349 PPQGGSKSRSARSPPG-KPQGPPQQEGNNPQGPPPPAGGNPQQ-PQAPPAGQPQGPPRPP 406
Query: 198 QRPGRKRSPQ 207
Q R PQ
Sbjct: 407 QGGRPSRPPQ 416
Score = 34.3 bits (77), Expect = 0.10
Identities = 43/170 (25%), Positives = 53/170 (31%), Gaps = 12/170 (7%)
Query: 64 VSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLA 123
VS S + G PQ +G +G Q G+ GK
Sbjct: 23 VSQEESPSLIAGNPQGAPPQGGNKPQGPPSP--PGKPQGPPPQGGNQPQGPPPPPGKPQG 80
Query: 124 VPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPE 183
P G P + PPG + P P P + P NQ PQ P
Sbjct: 81 PPPQGGNKP----QGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPPPQGGNQ--PQGPPP 134
Query: 184 PP--PAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQG 231
PP P G + G + Q P PQ P + S R P PQG
Sbjct: 135 PPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKS--RSSRSPPGKPQG 182
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 48.5 bits (114), Expect = 5e-06
Identities = 57/225 (25%), Positives = 78/225 (34%), Gaps = 28/225 (12%)
Query: 23 QNGGQSRGSR---GRPPGRALRRGSCARGEKRPPG------PTGGQWRWGVSPRPSAASA 73
Q G QS+G G+P G+ + G+ ++G PG P GG G PRP
Sbjct: 84 QGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEG 143
Query: 74 TGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPA 133
P ++G R G+ E Q S+G +++G P
Sbjct: 144 PPPQGGNQSQGPPPRPGKPEG---PPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPR 200
Query: 134 RRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPP--PAGSAA 191
+ PP G G P +P P Q +PQ P P P G
Sbjct: 201 PGKPEGPPPQGGNQSQGPPPRPGKPEGPPSQ---------GGNKPQGPPPHPGKPQGPPP 251
Query: 192 RSGRRAQRPGRKRSPQSAPAESG--ELSIDREEG---GPRQAPQG 231
+ G + QRP PQ P G + + G GP PQG
Sbjct: 252 QEGNKPQRPPPPGRPQGPPPPGGNPQQPLPPPAGKPQGPPPPPQG 296
Score = 48.5 bits (114), Expect = 5e-06
Identities = 54/198 (27%), Positives = 71/198 (35%), Gaps = 48/198 (24%)
Query: 23 QNGGQSRGSR---GRPPGRALRRGSCARG------EKRPPGPTGGQWRWGVSPRPSAASA 73
Q G QS+G G+P G + G+ ++G + P P GG G PRP
Sbjct: 147 QGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGKPEG 206
Query: 74 TGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPA 133
P ++G R G+ E S G+ GK P G P
Sbjct: 207 PPPQGGNQSQGPPPRPGKPEGPPS--------QGGNKPQGPPPHPGKPQGPPPQEGNKPQ 258
Query: 134 RRRETANPPGPGRAR----PGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGS 189
R PP PGR + PGG+P +PL P +PQ P PP G
Sbjct: 259 R------PPPPGRPQGPPPPGGNP--QQPLPPPAG------------KPQGPPPPPQGG- 297
Query: 190 AARSGRRAQRPGRKRSPQ 207
R RP + + PQ
Sbjct: 298 ------RPHRPPQGQPPQ 309
Score = 45.1 bits (105), Expect = 6e-05
Identities = 51/207 (24%), Positives = 73/207 (35%), Gaps = 21/207 (10%)
Query: 33 GRPPGRALRRGSCARGEKRPPG------PTGGQWRWGVSPRPSAASATGPPQDRAARGCE 86
G+P GR + G+ ++G PG P GG G PRP P ++G
Sbjct: 55 GKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPP 114
Query: 87 LREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGR 146
R G+ E Q S+G +++G P + PP G
Sbjct: 115 PRPGKPE---GPPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGN 171
Query: 147 ARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSP 206
G P +P P Q Q+ RP + PPP G G P R P
Sbjct: 172 QSQGPPPHPGKPEGPPPQ--GGNQSQGPPPRPGKPEGPPPQGGNQSQG----PPPRPGKP 225
Query: 207 QSAPAESGELSIDREEGGPRQ--APQG 231
+ P++ G ++ +G P PQG
Sbjct: 226 EGPPSQGG----NKPQGPPPHPGKPQG 248
Score = 43.5 bits (101), Expect = 2e-04
Identities = 54/216 (25%), Positives = 74/216 (34%), Gaps = 28/216 (12%)
Query: 33 GRPPGRALRRGSCARGEKRPPG------PTGGQWRWGVSPRPSAASATGPPQDRAARGCE 86
G+P GR + G+ + PPG P GG G PRP P ++G
Sbjct: 34 GKPEGRRPQGGNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPP 93
Query: 87 LREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGR 146
R G+ E Q S+G +++G P + PP G
Sbjct: 94 PRPGKPE---GQPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGPPPQGGN 150
Query: 147 ARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQ--RPEPPPAGSAARSGRRAQRPGRKR 204
G P +P P P +Q P +PE PP +S RPG+
Sbjct: 151 QSQGPPPRPGKPEGPP-----PQGGNQSQGPPPHPGKPEGPPPQGGNQSQGPPPRPGK-- 203
Query: 205 SPQSAPAESGELS------IDREEGGPRQA---PQG 231
P+ P + G S + EG P Q PQG
Sbjct: 204 -PEGPPPQGGNQSQGPPPRPGKPEGPPSQGGNKPQG 238
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 47.8 bits (112), Expect = 9e-06
Identities = 49/170 (28%), Positives = 56/170 (32%), Gaps = 35/170 (20%)
Query: 29 RGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELR 88
R RG P A PP P +PR +AA+AT PP
Sbjct: 113 RAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAP-ARAPRAAAAAATAPP----------- 160
Query: 89 EGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRAR 148
S G A LA P PA A P GP RA
Sbjct: 161 -----------------SPGPAQPGPRAQRAAPLAAPPP---APAAPPAVAPPAGPRRAP 200
Query: 149 PGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQ 198
P PL P Q AP Q Q P +P+PPP G A R+G A+
Sbjct: 201 PPAVAAREPPLPPPPQPPAPPQ---QQQPPPPQPQPPPEGGAVRAGGAAR 247
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 47.0 bits (110), Expect = 2e-05
Identities = 48/195 (24%), Positives = 71/195 (36%), Gaps = 18/195 (9%)
Query: 26 GQSRGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGC 85
G G + P S G RP TGG G P+P++ A+
Sbjct: 3686 GTENGMKPATPKAKPGPSSQGSGSPRPGTKTGG----GSQPQPASGQLQSETATTPAKPS 3741
Query: 86 ELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPG 145
A + +Q + +KG A G H ++ G + +R+ PGP
Sbjct: 3742 FPSRSPAPERLPARAQAKSCTKGPREAGEQ---GPHGSLGPKEKGESSTKRKKGQVPGPA 3798
Query: 146 RARPGGSPFGH------RPLLQPRQIFAPLQAITNQVRP--QQRPEPPPAGSAARSGRRA 197
R+ GS FG +P PR+ P + + + +P Q +P PPP+
Sbjct: 3799 RSESVGS-FGRAPSAPDKPPRTPRKQATPSRVLPTKPKPNSQNKPRPPPSEQRKAEPGHT 3857
Query: 198 QRPGR--KRSPQSAP 210
QR R K PQ P
Sbjct: 3858 QRKDRLGKAFPQGRP 3872
Score = 37.0 bits (84), Expect = 0.016
Identities = 46/175 (26%), Positives = 60/175 (34%), Gaps = 20/175 (11%)
Query: 48 GEKRPPG-----PTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQK 102
GE +PP P+ + G P S P A R R G +S+ K
Sbjct: 71 GELKPPSLRGQAPSSTPGKRGSPQTPPGRSPLQAPSRLAGRAEGSPPQRYILGIASSRTK 130
Query: 103 DTLSKGSAAAATAVAAGKHLAVPETRG-GVPARRRETANPPGPGR--ARPGGSPFG-HRP 158
TL + A + P+ G G P R PG R A+P G HR
Sbjct: 131 PTLDETPENPQLEAAQLPEVDTPQGPGTGAPLR-------PGLPRTEAQPAAEELGFHRC 183
Query: 159 LLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAES 213
+P F TN P P PP G G +PG Q++ A+S
Sbjct: 184 FQEPPSSFTS----TNYTSPSATPRPPAPGPPQSRGTSPLQPGSYPEYQASGADS 234
Score = 29.6 bits (65), Expect = 2.5
Identities = 52/218 (23%), Positives = 79/218 (36%), Gaps = 23/218 (10%)
Query: 16 QVHTSYLQNGGQSRGSRGRPPGRALRRGSCARGEK-RPPGPTGGQ-WRWGVSPRPSAASA 73
+V +S++ + G RG+ + G A + C K R T + ++ V PR + S
Sbjct: 3621 EVSSSHMVSEGGPRGTFHK--GSATKPAGCQSSSKDRSAASTPSKALKFPVHPRKAVGSL 3678
Query: 74 TGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPA 133
ARG E G A + + GS T G P+ G
Sbjct: 3679 A---PGELARGTE--NGMKPATPKAKPGPSSQGSGSPRPGTKTGGGSQ---PQPASG--Q 3728
Query: 134 RRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARS 193
+ ETA P + P SP P ++ A QA + P++ E P GS
Sbjct: 3729 LQSETATTPAKP-SFPSRSP-------APERLPARAQAKSCTKGPREAGEQGPHGSLGPK 3780
Query: 194 GRRAQRPGRKRSPQSAPAESGEL-SIDREEGGPRQAPQ 230
+ RK+ PA S + S R P + P+
Sbjct: 3781 EKGESSTKRKKGQVPGPARSESVGSFGRAPSAPDKPPR 3818
Score = 29.3 bits (64), Expect = 3.3
Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 22/91 (24%)
Query: 65 SPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAV 124
+PRP A GPPQ R +S Q + + A+ A + +
Sbjct: 202 TPRPPAP---GPPQSRG---------------TSPLQPGSYPEYQASGADSWPPAAENSF 243
Query: 125 PETRGGVPARRRETANPPGPGRARPGGSPFG 155
P GVP E P P +RPGGSP G
Sbjct: 244 PGANFGVPPAEPE----PIPKGSRPGGSPRG 270
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 46.2 bits (108), Expect = 3e-05
Identities = 60/216 (27%), Positives = 79/216 (36%), Gaps = 35/216 (16%)
Query: 29 RGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELR 88
+G RG P G G +GE+ PPGP G + GV+ RP A GPP +G +
Sbjct: 1479 KGDRGFP-GPLGEAGE--KGERGPPGPAGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGE 1535
Query: 89 EGRAEAGHSSTSQKDTLSKGSAAAATAVAAGK-HLAVPETRGGVPARRRETANPPG---P 144
GR D G A A G A P GV R PPG P
Sbjct: 1536 PGR---------PGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQGER----GPPGLVLP 1582
Query: 145 GRARPGGSPFGHRPLLQPRQIFAPLQA-ITNQVRPQQRPEPP-PAGSAARSGRRAQR--- 199
G P G P P+ + P + + RP PP P G R G ++
Sbjct: 1583 GDPGPKGDPGDRGPIGLTGRAGPPGDSGPPGEKGDPGRPGPPGPVGPRGRDGEVGEKGDE 1642
Query: 200 --------PGR--KRSPQSAPAESGELSIDREEGGP 225
PG+ +R + AP G + ++G P
Sbjct: 1643 GPPGDPGLPGKAGERGLRGAPGVRGPVGEKGDQGDP 1678
Score = 44.3 bits (103), Expect = 1e-04
Identities = 60/234 (25%), Positives = 73/234 (31%), Gaps = 44/234 (18%)
Query: 29 RGSRGRP--------PGRALRRGSCA-------RGEKRPPGPTGGQWRWGVSPRPSAASA 73
+G RG P PG RG +G + PPGP GG G P A
Sbjct: 2137 KGDRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGP 2196
Query: 74 TGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPA 133
GP +G E G + + A L P+ G+P
Sbjct: 2197 AGPQGPSGLKG--------EPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPG 2248
Query: 134 RRRETANPPGPG----------RARPG-----GSPFGHRPLLQPRQIFAPLQAITNQVRP 178
+ ET P PG R PG G P P +P AP QA+ P
Sbjct: 2249 QVGETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAVVG--LP 2306
Query: 179 QQRPEPPPAGSAARSGRRAQRPGRK--RSPQSAPAESGELSIDREEGGPRQAPQ 230
+ E G A G PG K R E GE E G P + Q
Sbjct: 2307 GAKGEKGAPGGLA--GDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQ 2358
Score = 40.0 bits (92), Expect = 0.002
Identities = 57/211 (27%), Positives = 71/211 (33%), Gaps = 47/211 (22%)
Query: 30 GSRGRP--PGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCEL 87
G RG P PG A++ RGE+ PPGP G G P + GP G +
Sbjct: 1386 GPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKG 1445
Query: 88 REGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRA 147
+G +E G G+P + P PG
Sbjct: 1446 EKGDSEDG--------------------------------APGLPGQ------PGSPGEQ 1467
Query: 148 RPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQ 207
P G P P R PL + +R P PAGS G A RPG K P+
Sbjct: 1468 GPRGPPGAIGP-KGDRGFPGPLGEAGEK---GERGPPGPAGSRGLPG-VAGRPGAK-GPE 1521
Query: 208 SAPAESGELSIDREEGGPRQAPQGAGHALEG 238
P +G E G P P G A+ G
Sbjct: 1522 GPPGPTGRQGEKGEPGRPGD-PAVVGPAVAG 1551
Score = 33.5 bits (75), Expect = 0.18
Identities = 52/190 (27%), Positives = 64/190 (33%), Gaps = 21/190 (11%)
Query: 30 GSRGRP-----PGRALRRGSCAR----GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDR 80
G G+P PGRA G R GE+ G G Q R G P GPP
Sbjct: 2034 GEPGKPGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDGPPGLPGTPGPPGPP--- 2090
Query: 81 AARGCELREGRAEAGHSSTSQKDTL--SKGSAAAATAVAAGKHLAVPETRG--GVPARRR 136
G ++ G S L +KG + VP +G G P R
Sbjct: 2091 ---GPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKGDRGEPGPRG 2147
Query: 137 ETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRR 196
+ NP PG G P G L PR P+ + P PAG SG +
Sbjct: 2148 QDGNPGLPGERGMAG-PEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLK 2206
Query: 197 AQRPGRKRSP 206
+ PG P
Sbjct: 2207 GE-PGETGPP 2215
Score = 31.6 bits (70), Expect = 0.67
Identities = 60/235 (25%), Positives = 78/235 (33%), Gaps = 30/235 (12%)
Query: 29 RGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELR 88
+G +G P LR G+ PG TG G P +A+A G +R G + R
Sbjct: 1253 KGQKGEPGEMGLRGQVGPPGDPGLPGRTGAP---GPQGPPGSATAKG---ERGFPGADGR 1306
Query: 89 EGR-AEAGHSSTSQKDTLSKGSAAAATAVAAGKH-LAVPETRGGVPARRRETANPPGPGR 146
G AG+ T L G+ P+ G P + P PGR
Sbjct: 1307 PGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGR 1366
Query: 147 ---ARPGGSPFGHRPLLQPRQIFAP-LQAITNQVRPQQRPE--PPPAGSAARSGRRAQRP 200
P G P PL P P L + R E PP G + P
Sbjct: 1367 KGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGPGEGGIAPGEPGLP 1426
Query: 201 GRKRS-----PQSAPAESGELSIDREEGGP----------RQAPQGAGHALEGRG 240
G S P P + GE D E+G P Q P+G A+ +G
Sbjct: 1427 GLPGSPGPQGPVGPPGKKGEKG-DSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKG 1480
Score = 29.3 bits (64), Expect = 3.3
Identities = 55/224 (24%), Positives = 73/224 (32%), Gaps = 57/224 (25%)
Query: 29 RGSRGRP-----PGRALRRGSCARGEKRPPGPT---GGQWRWGVSPRPSAASATGPPQDR 80
+G RG P PG AL GE+ PPGP+ G + G+ P A G
Sbjct: 2005 KGDRGDPGPQGPPGLAL-------GERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGRP 2057
Query: 81 AARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGV-PARRRETA 139
RG R E G +D +P T G P + +
Sbjct: 2058 GERG-----ERGEKGERGEQGRDGPP----------------GLPGTPGPPGPPGPKVSV 2096
Query: 140 NPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQR 199
+ PGPG + G P L+ + P + P G G + R
Sbjct: 2097 DEPGPGLSGEQGPP--------------GLKGAKGE--PGSNGDQGPKGDRGVPGIKGDR 2140
Query: 200 --PGRKRSPQSAPAESGELSIDREEGGP-RQAPQGAGHALEGRG 240
PG R P GE + EG P Q P+G + G G
Sbjct: 2141 GEPG-PRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHG 2183
Score = 29.3 bits (64), Expect = 3.3
Identities = 33/126 (26%), Positives = 42/126 (33%), Gaps = 32/126 (25%)
Query: 30 GSRGRPPGRALRR--GSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCEL 87
G +G P + + G G PPGP G + G+ P A G P RG
Sbjct: 2357 GQKGAPGPKGFKGDPGVGVPGSPGPPGPPGVKGDLGLPGLPGAPGVVGFPGQTGPRG--- 2413
Query: 88 REGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPG-PGR 146
E G S + + LA P R G+P PPG PG
Sbjct: 2414 -----EMGQPGPSGE-----------------RGLAGPPGREGIPG----PLGPPGPPGS 2447
Query: 147 ARPGGS 152
P G+
Sbjct: 2448 VGPPGA 2453
Score = 28.9 bits (63), Expect = 4.3
Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 29 RGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELR 88
RG G P G RG GEK GP G R G+ +P AA +GP G R
Sbjct: 1751 RGPPG-PQGDPGVRGPA--GEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGR 1807
Query: 89 EG 90
+G
Sbjct: 1808 DG 1809
Score = 27.7 bits (60), Expect = 9.7
Identities = 52/221 (23%), Positives = 74/221 (33%), Gaps = 36/221 (16%)
Query: 29 RGSRGRP--PGRALRRGSCA----RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAA 82
+G GRP PG RG +G++ PPG G + G A GP ++
Sbjct: 1615 KGDPGRPGPPGPVGPRGRDGEVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEKGD 1674
Query: 83 RGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPP 142
+G +GR + SS + D G G + +T G RE P
Sbjct: 1675 QGDPGEDGRNGSPGSSGPKGDRGEPG--------PPGPPGRLVDTGPGA----REKGEPG 1722
Query: 143 GPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGR 202
G+ P G P P AP + R P+ P + P
Sbjct: 1723 DRGQEGPRG------PKGDPGLPGAPGERGIEGFRGPPGPQGDPG---------VRGPAG 1767
Query: 203 KRSPQSAPAESGELSIDREEG--GPRQAPQGAGHALEGRGR 241
++ + P G +D + G GP P GA GR
Sbjct: 1768 EKGDRGPPGLDGRSGLDGKPGAAGP-SGPNGAAGKAGDPGR 1807
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 45.8 bits (107), Expect = 3e-05
Identities = 39/148 (26%), Positives = 54/148 (36%), Gaps = 10/148 (6%)
Query: 72 SATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGV 131
+A GP Q ++ ++ G A + Q+ L A A + + P TRG
Sbjct: 3752 AAPGPQQSQSPSSRQIPSGAASRQPQTQQQQQGLGLQPPQQALTQARLQQQSQPTTRGSA 3811
Query: 132 PARRRETANP-PGPGRA---RPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPA 187
PA + P PGP A +P G P + AP Q Q +P P P
Sbjct: 3812 PAASQPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQQGRAPQAQPAPGPGPAGV 3871
Query: 188 GSAARSGRRAQRPGRKRSPQSAPAESGE 215
+ AR G G +P P GE
Sbjct: 3872 KAGARPG------GTPGAPAGQPGADGE 3893
Score = 42.0 bits (97), Expect = 5e-04
Identities = 58/219 (26%), Positives = 87/219 (39%), Gaps = 27/219 (12%)
Query: 24 NGGQSRGSRGRPPGRALRRGSC---ARGEKRP---PGPTGGQWRWGVSPRPSAASATGPP 77
+G S G PGR + R E RP P + G PS+A + P
Sbjct: 3650 HGRHSGRHTGEEPGRRAAKPHARDLGRHEARPHSQPSSAPAMPKKGQPGYPSSAEYSQPS 3709
Query: 78 QDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRE 137
+ +A H+S S+K + S AA A A P+ +G A +
Sbjct: 3710 RASSAYH-----------HASDSKKGSRQAHSGPAALQSKAEPQ-AQPQLQGRQAAPGPQ 3757
Query: 138 TANPPGPGRARPGGSPFGHRPLLQPRQ----IFAPLQAITNQVRPQQRPEPPPAGSAARS 193
+ P R P G+ +P Q +Q + P QA+T Q R QQ+ +P GSA +
Sbjct: 3758 QSQSPS-SRQIPSGAA-SRQPQTQQQQQGLGLQPPQQALT-QARLQQQSQPTTRGSAPAA 3814
Query: 194 GRRAQRPGRKRSPQSAPAESGELSIDREEG--GPRQAPQ 230
+ A +P S + P +G ++ G G +APQ
Sbjct: 3815 SQPAGKPQPGPSTATGPQPAGPPRAEQTNGSKGTAKAPQ 3853
Score = 31.2 bits (69), Expect = 0.88
Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 3/103 (2%)
Query: 142 PGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPA-GSAARSGRRAQRP 200
PGPG +P +P G L P A A+ P P P P GS +R +
Sbjct: 29 PGPGAGKPPSAPAGGGQL--PAAGAARSTAVPPVPGPGPGPGPGPGPGSTSRRLDPKEPL 86
Query: 201 GRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGRGRVI 243
G +R+ P ++ + E +A AG +G R +
Sbjct: 87 GNQRAASPTPKQASATTPGHESPRETRAQGPAGQEADGPRRTL 129
>gi|237757308 synaptojanin 1 isoform b [Homo sapiens]
Length = 1350
Score = 45.4 bits (106), Expect = 4e-05
Identities = 53/217 (24%), Positives = 77/217 (35%), Gaps = 32/217 (14%)
Query: 35 PPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATG---PPQDRAARGCELREGR 91
PP R + + +RPP P+G + SP P+ G PP AR RE
Sbjct: 1148 PPPRPVAPPTRPAPPQRPPPPSGAR-----SPAPTRKEFGGIGAPPSPGVAR----REME 1198
Query: 92 AEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPG- 150
A T++KD + + + +A R +P R + P RA G
Sbjct: 1199 APKS-PGTTRKDNIGRSQPSPQAGLAGPGPAGYSTARPTIPPRAGVISAPQSHARASAGR 1257
Query: 151 --------------GSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRR 196
GS F PL +P+ F P ++ + Q P P A +SG
Sbjct: 1258 LTPESQSKTSETSKGSTFLPEPL-KPQAAFPPQSSLPPPAQRLQEPLVPVAAPMPQSG-- 1314
Query: 197 AQRPGRKRSPQSAPAESGELSIDREEGGPRQAPQGAG 233
+P + PQ P S+ E Q Q +G
Sbjct: 1315 -PQPNLETPPQPPPRSRSSHSLPSEASSQPQQEQPSG 1350
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 45.4 bits (106), Expect = 4e-05
Identities = 67/226 (29%), Positives = 85/226 (37%), Gaps = 34/226 (15%)
Query: 30 GSRGRP--PGRALRRGSC-ARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCE 86
G RGRP PG A RG+ A G PPGPTG G P A A G + RG E
Sbjct: 308 GERGRPGAPGPAGARGNDGATGAAGPPGPTGPA---GPPGFPGAVGAKGEAGPQGPRGSE 364
Query: 87 LREG-RAE------------AGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPA 133
+G R E AG+ + + A A A G P RG P+
Sbjct: 365 GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPG----FPGARG--PS 418
Query: 134 RRRETANPPGP-GRARPGGSP-----FGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPA 187
+ PPGP G + G+P G + P + P + + R EP P
Sbjct: 419 GPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPT 478
Query: 188 GSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGPRQA-PQGA 232
G G R PG + P A +G E G P A P+G+
Sbjct: 479 GLPGPPGERG-GPGSRGFP-GADGVAGPKGPAGERGSPGPAGPKGS 522
Score = 44.7 bits (104), Expect = 8e-05
Identities = 57/229 (24%), Positives = 80/229 (34%), Gaps = 26/229 (11%)
Query: 29 RGSRGRPPGRALRRGSCARGE------KRPPGPTGGQWRWGVSPRPSAASATGPPQDR-- 80
+G+ G P + + A+GE + PPGP G + + G P GPP +R
Sbjct: 430 KGNSGEPGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGG 489
Query: 81 -AARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRG-----GVPAR 134
+RG +G A + + G + +P +G G P
Sbjct: 490 PGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGP 549
Query: 135 RRETANPPGP----GRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSA 190
+T PPGP GR P G P G R P A + +R P P G+
Sbjct: 550 DGKT-GPPGPAGQDGRPGPPGPP-GARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAV 607
Query: 191 ARSGR----RAQRPGRKRSPQSAPAESGELSIDREEG--GPRQAPQGAG 233
+G+ AQ P P E G +G GP P AG
Sbjct: 608 GPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAG 656
Score = 42.0 bits (97), Expect = 5e-04
Identities = 69/231 (29%), Positives = 86/231 (37%), Gaps = 42/231 (18%)
Query: 35 PPGRALRRGSCA-RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG-RA 92
PPG G+ G + PPGP G G + +P GPP + ARG G
Sbjct: 204 PPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPG 263
Query: 93 EAGHSSTSQKDTLSKGSAAAA----TAVAAGKHLA--------VPETRG--GVP----AR 134
GH S D +KG A A + G++ A +P RG G P AR
Sbjct: 264 MKGHRGFSGLDG-AKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGAR 322
Query: 135 RRE----TANPPGP-GRARPGGSP-----FGHRPLLQPRQIFAPLQAITNQVRPQQRPEP 184
+ A PPGP G A P G P G PR P Q + + P P
Sbjct: 323 GNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGP-QGVRGEPGP-----P 376
Query: 185 PPAGSAARSGRRAQ--RPGRKRSPQSAPAESGELSIDREEGGPRQAPQGAG 233
PAG+A +G +PG K AP +G G PQG G
Sbjct: 377 GPAGAAGPAGNPGADGQPGAK-GANGAPGIAGAPGFPGARG--PSGPQGPG 424
Score = 41.2 bits (95), Expect = 8e-04
Identities = 55/204 (26%), Positives = 67/204 (32%), Gaps = 34/204 (16%)
Query: 46 ARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG-RAEAGHSS------ 98
ARG PPG TG G P + GPP G E +G R E G +
Sbjct: 864 ARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVG 923
Query: 99 -------TSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGG 151
+K + A A + +A G+P +R E P PG P G
Sbjct: 924 PPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPG---PSG 980
Query: 152 SPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSP--QSA 209
P P A + P P AG SGR PG + SP +
Sbjct: 981 EPGKQ----------GPSGASGERGPPGPMGPPGLAGPPGESGREG-APGAEGSPGRDGS 1029
Query: 210 PAESGELSIDREEGGPRQAPQGAG 233
P G DR E GP P G
Sbjct: 1030 PGAKG----DRGETGPAGPPGAPG 1049
Score = 37.0 bits (84), Expect = 0.016
Identities = 50/191 (26%), Positives = 69/191 (36%), Gaps = 19/191 (9%)
Query: 35 PPGRALRRGSCA-RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG-RA 92
PPG A + G G+ PGP+G + G GP R A G +G +
Sbjct: 651 PPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKG 710
Query: 93 EAG-------HSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARR--RETANPPG 143
+AG + + + AA + A P+ G P + R P G
Sbjct: 711 DAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIG 770
Query: 144 PGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQ--RPG 201
P P G+P G + P P A + P R EP P G A +G +PG
Sbjct: 771 P--PGPAGAP-GDKGESGPSGPAGPTGA---RGAPGDRGEPGPPGPAGFAGPPGADGQPG 824
Query: 202 RKRSPQSAPAE 212
K P A A+
Sbjct: 825 AKGEPGDAGAK 835
Score = 35.0 bits (79), Expect = 0.061
Identities = 64/222 (28%), Positives = 75/222 (33%), Gaps = 32/222 (14%)
Query: 30 GSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELRE 89
G++G P + + G P GP G G A + GPP A G
Sbjct: 824 GAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPP---GATGFPGAA 880
Query: 90 GRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPG-PGRAR 148
GR S + G A GK P G PA R PPG PG A
Sbjct: 881 GRVGPPGPSGNAGPPGPPGPAGK----EGGKG---PRGETG-PAGRPGEVGPPGPPGPAG 932
Query: 149 PGGSPFGHRPLLQP----RQIFAPLQAITNQVRPQQRPE------PPPAGSAAR---SGR 195
GSP P P Q A + + P QR E P P+G + SG
Sbjct: 933 EKGSPGADGPAGAPGTPGPQGIAGQRGVVG--LPGQRGERGFPGLPGPSGEPGKQGPSGA 990
Query: 196 RAQR--PGRKRSPQSA--PAESGELSIDREEGGP-RQAPQGA 232
+R PG P A P ESG EG P R GA
Sbjct: 991 SGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGA 1032
Score = 33.9 bits (76), Expect = 0.14
Identities = 41/139 (29%), Positives = 50/139 (35%), Gaps = 14/139 (10%)
Query: 29 RGSRGRP-----PGRALRRG----SCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQD 79
+G+RG P PG RG A+G+ P GP G G + P G P +
Sbjct: 250 QGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGE 309
Query: 80 R---AARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGV-PARR 135
R A G G A ++ T G AV A RG P
Sbjct: 310 RGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGV 369
Query: 136 RETANPPGP-GRARPGGSP 153
R PPGP G A P G+P
Sbjct: 370 RGEPGPPGPAGAAGPAGNP 388
Score = 33.9 bits (76), Expect = 0.14
Identities = 59/228 (25%), Positives = 75/228 (32%), Gaps = 43/228 (18%)
Query: 29 RGSRGRPPGRALRRGSC-------ARGEKRPPGPTGGQWRWGVSPRP---SAASATGPPQ 78
RG +G PPG A RG+ A+G+ PG G Q G+ P AA GP
Sbjct: 685 RGVQG-PPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKG 743
Query: 79 DRAARGCELREGR--AEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRR 136
DR G + +G + T A + A P G P R
Sbjct: 744 DRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRG 803
Query: 137 ETANPPGP-GRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGR 195
E PPGP G A P G+ +P + EP AG+ +G
Sbjct: 804 E-PGPPGPAGFAGPPGA----------------------DGQPGAKGEPGDAGAKGDAG- 839
Query: 196 RAQRPGRKRSPQSAPAESGELSIDREEGGPRQA-PQGAGHALEGRGRV 242
P P P G + +G A P GA GRV
Sbjct: 840 ----PPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRV 883
Score = 33.5 bits (75), Expect = 0.18
Identities = 53/193 (27%), Positives = 66/193 (34%), Gaps = 25/193 (12%)
Query: 28 SRGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCEL 87
S G GRP L G PGP G G + + GPP R G
Sbjct: 522 SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMG 581
Query: 88 REGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGV-PARRRETANPPG-PG 145
G KG AA AG+ VP G V PA + A G PG
Sbjct: 582 FPG---------------PKG--AAGEPGKAGER-GVPGPPGAVGPAGKDGEAGAQGPPG 623
Query: 146 RARPGGSPFGHRPLLQP--RQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQR--PG 201
A P G P P + + P +P ++ P G+ SG R +R PG
Sbjct: 624 PAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPG 683
Query: 202 RKRSPQSAPAESG 214
+R Q P +G
Sbjct: 684 -ERGVQGPPGPAG 695
Score = 31.2 bits (69), Expect = 0.88
Identities = 56/228 (24%), Positives = 70/228 (30%), Gaps = 42/228 (18%)
Query: 29 RGSRGRP--PGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCE 86
RG RG P PG + GE GP+G G GPP + G
Sbjct: 967 RGERGFPGLPGPS--------GEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAP 1018
Query: 87 LREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRET-----ANP 141
EG S ++ D G A A A P G R ET A P
Sbjct: 1019 GAEGSPGRDGSPGAKGDRGETGPAGPPGAPGA-PGAPGPVGPAGKSGDRGETGPAGPAGP 1077
Query: 142 PGPGRARPGGSPFGHR-----------PLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSA 190
GP AR P G R ++ + F+ LQ P PP
Sbjct: 1078 VGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQG----------PPGPPGSPG 1127
Query: 191 ARSGRRAQRPGRKRSPQSAPAESGELSIDREEG-----GPRQAPQGAG 233
+ A P R P + G+ ++ G GPR AG
Sbjct: 1128 EQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAG 1175
Score = 30.0 bits (66), Expect = 2.0
Identities = 54/203 (26%), Positives = 69/203 (33%), Gaps = 39/203 (19%)
Query: 47 RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG-RAEAGHSSTSQKDTL 105
RG PPG G Q G P A+GP R G + G EAG +
Sbjct: 187 RGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGP 246
Query: 106 SKGSAAAATAVAAGKHLAVPETRG-----GVPARRRETANPPGPGRARPGGSPFGHRPLL 160
A AG +P +G G+ + + A P GP + PG
Sbjct: 247 PGPQGARGLPGTAG----LPGMKGHRGFSGLDGAKGD-AGPAGP-KGEPG---------- 290
Query: 161 QPRQIFAPLQAITNQVRPQQRP-------EPPPAGSAARSGRR-AQRPGRKRSPQSAPAE 212
P + AP Q+ P+ P P PAG+ G A P P P
Sbjct: 291 SPGENGAP-----GQMGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGF 345
Query: 213 SGELSIDREEG--GPR--QAPQG 231
G + E G GPR + PQG
Sbjct: 346 PGAVGAKGEAGPQGPRGSEGPQG 368
Score = 28.5 bits (62), Expect = 5.7
Identities = 61/247 (24%), Positives = 76/247 (30%), Gaps = 58/247 (23%)
Query: 22 LQNGGQSRGSRGRP-----------------PGRALRRG----------SCARGEKRPPG 54
LQ RG+ G P PG+ RG + A G+K G
Sbjct: 726 LQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESG 785
Query: 55 PTGGQWRWGVSPRPSAASATGPPQDRAARGCELREG----RAEAGHSSTSQKDTLSKGSA 110
P+G G P GPP G +G + E G + ++ D G A
Sbjct: 786 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG-AKGDAGPPGPA 844
Query: 111 AAATAVAAGKHLAVPETRG-----------GVPARRRETANPPGP-GRARPGG--SPFGH 156
A ++ P +G G P PPGP G A P G P G
Sbjct: 845 GPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGR-VGPPGPSGNAGPPGPPGPAGK 903
Query: 157 RPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGEL 216
PR P RP + P P G A G PG P AP G
Sbjct: 904 EGGKGPRGETGPAG------RPGEVGPPGPPGPAGEKG----SPGAD-GPAGAPGTPGPQ 952
Query: 217 SIDREEG 223
I + G
Sbjct: 953 GIAGQRG 959
Score = 27.7 bits (60), Expect = 9.7
Identities = 55/210 (26%), Positives = 69/210 (32%), Gaps = 39/210 (18%)
Query: 48 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSK 107
G + P GP G R G+ +P GPP G G + Q LS
Sbjct: 118 GPRGPRGPAGPPGRDGIPGQPGLPGPPGPPGPPGPPG---------LGGNFAPQ---LSY 165
Query: 108 GSAAAATAVAAGKHLAVPETRGGVPARRRETANPPG----------PGR-ARPGGS-PFG 155
G +T ++VP G P+ R PPG PG PG S P G
Sbjct: 166 GYDEKSTG-----GISVPGPMG--PSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMG 218
Query: 156 HRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRK-----RSPQSAP 210
R P RP +R P P G+ G A PG K A
Sbjct: 219 PRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPG-TAGLPGMKGHRGFSGLDGAK 277
Query: 211 AESGELSIDREEGGPRQAPQGAGHALEGRG 240
++G E G P + GA + RG
Sbjct: 278 GDAGPAGPKGEPGSPGE--NGAPGQMGPRG 305
>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
isoform B' [Homo sapiens]
Length = 240
Score = 45.4 bits (106), Expect = 4e-05
Identities = 61/202 (30%), Positives = 70/202 (34%), Gaps = 39/202 (19%)
Query: 23 QNGGQSRGSRGRPPGRALRRGS---CARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQD 79
+N Q+ R G L RG E PP TG ++ P A +A GP
Sbjct: 54 KNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPPKDTG------IARVPLAGAAGGPGIG 107
Query: 80 RAA-RGCELREGRAEA---------GHSSTSQKDTLSKG------SAAAATAVAAGKHLA 123
RAA RG +A G SQ+ +G +AAAATA AG
Sbjct: 108 RAAGRGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQ 167
Query: 124 VPETRGGVPARRRETANPPG-----PGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRP 178
P RGG P A PPG PG P G P G P P P
Sbjct: 168 YPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP---------P 218
Query: 179 QQRPEPPPAGSAARSGRRAQRP 200
RP PP G R RP
Sbjct: 219 GMRPPPPGMRGPPPPGMRPPRP 240
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 44.7 bits (104), Expect = 8e-05
Identities = 66/252 (26%), Positives = 83/252 (32%), Gaps = 44/252 (17%)
Query: 17 VHTSYLQNGGQSRGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGP 76
+ T + GGQ G +P + L + KR G SAA A+G
Sbjct: 424 LRTGTQEVGGQDPGEAVQPCRQPLGARVADKVRKRRKVDEGAG--------DSAAVASGG 475
Query: 77 PQDRAARGCELREGRAEAGHSSTS-QKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARR 135
Q A G G +AGHS ++DT + T G P PA
Sbjct: 476 AQTLALAGSPAPSGHPKAGHSENGVEEDTEGRTGPKEGT---PGSPSETPGPSPAGPAGD 532
Query: 136 RETANP---PGPGRARPGG----------------SPFGHRPLLQPRQIFAPLQAITNQV 176
+P PGP A P G P G P P + P A +
Sbjct: 533 EPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPTRD 592
Query: 177 RPQQRPE----PPPAGSAARSGRRAQRPGRKRSPQSA------PAESGELSIDREEGGP- 225
P + P P PAG A A+ P P+ A PAES + GP
Sbjct: 593 EPAESPSETPGPRPAGPA--GDEPAESPSETPGPRPAGPAGDEPAESPSETPGPSPAGPT 650
Query: 226 RQAPQGAGHALE 237
R P AG A E
Sbjct: 651 RDEPAKAGEAAE 662
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 44.7 bits (104), Expect = 8e-05
Identities = 62/210 (29%), Positives = 79/210 (37%), Gaps = 21/210 (10%)
Query: 42 RGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRA--ARGCELREGRAEAGHSST 99
RG A KR GQW+ SP P+ A A PQ R GC R E H +
Sbjct: 350 RGFDAAVRKRKSPALSGQWQ-SPSPPPALAGAPPTPQQRQNFGPGCAGLSPRPEGPHGAG 408
Query: 100 S-QKDTLSKGSAAAATAVAAGKHLAVPE--TRGGVPARRRETANPPGPGRARPGGSPFGH 156
L T + + ++P +RG ARR G GR PGG G
Sbjct: 409 GCPMGELGMSLRVWGTLLPLERARSLPSWNSRGFCGARRGG-----GSGRFLPGGGWRGA 463
Query: 157 RPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGEL 216
R L+ AP Q+ + P P GSA R+ A+ +RS PA G
Sbjct: 464 RTKLRVCCTPAPGQSRGSLA-------PRPTGSAGRALAAARLFAPQRSAAQLPARCGCF 516
Query: 217 SIDREEGGPRQAPQGA---GHALEGRGRVI 243
R PR+ GA A RG+V+
Sbjct: 517 GSARGMRAPRRLLVGAEETAGARSKRGKVL 546
>gi|169215850 PREDICTED: transmembrane protein 46-like [Homo
sapiens]
Length = 547
Score = 44.7 bits (104), Expect = 8e-05
Identities = 61/207 (29%), Positives = 76/207 (36%), Gaps = 41/207 (19%)
Query: 25 GGQSRGSRGRP------PGRALRRGSCARGEKRPPGPT------GGQWRWGVSPRPSAAS 72
G Q R G P GR LRRG G R GP+ + R +PR SA
Sbjct: 272 GSQPRPENGPPGSHRTASGRGLRRGDSEGGVNRGIGPSRVSLLAPDKKRLNNAPRGSA-- 329
Query: 73 ATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVP 132
A GPP R R + G S T Q D + AA AA VP
Sbjct: 330 APGPP----------RGPRLQGGGSLTLQPDYAKYATFKAAALKAA------------VP 367
Query: 133 ARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAAR 192
RR P P RP +P P P P+ ++ + R P P PA +A R
Sbjct: 368 RARRSANRLPRPSGPRPRPAP-ARSPSQSPAGTPCPVLSLGAR-RGVTLPCPVPAEAAPR 425
Query: 193 SGRR---AQRPGRKRSPQSAPAESGEL 216
+ A P ++ P AP S +L
Sbjct: 426 DFCQRFPALEPSPRQPPARAPRPSPDL 452
>gi|113416996 PREDICTED: ankyrin repeat domain 33B [Homo sapiens]
Length = 1006
Score = 44.7 bits (104), Expect = 8e-05
Identities = 65/222 (29%), Positives = 87/222 (39%), Gaps = 37/222 (16%)
Query: 33 GRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRA 92
G PP + S G +R PG TG +W + PRP+ A P A++ R
Sbjct: 315 GTPPQQPTAPSSEWPGPQRSPG-TGPRWTAPL-PRPAPLPAKRPGDSPASK-------RP 365
Query: 93 EAGHSSTSQKDTLSKGSAAAATAVAAGK----HLAVPETRGG--VPARRRETANP----- 141
G S +D KG ++ AAG+ + P+ GG + + RE P
Sbjct: 366 RPGGVSPEARDP-PKGENPLCSSEAAGETGPTQVRGPDALGGGRLQGKGREGKAPGEGVS 424
Query: 142 PGPGRARPGGSPFGHRP--LLQPRQIFAPLQAITNQVRPQ-QRPEPPPAGSA-ARSGRRA 197
P P R G P P L QP + F ++ V + +R +G A ARSG
Sbjct: 425 PRPAPPRLGKPPRSRPPQGLAQPPETFFFERSRLVPVSAELERAGHGFSGDAEARSGDLG 484
Query: 198 QRPGRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGR 239
RP + S SAPA P Q PQ A H GR
Sbjct: 485 ARPASRSSLPSAPAP------------PAQQPQAARHGAAGR 514
Score = 27.7 bits (60), Expect = 9.7
Identities = 51/185 (27%), Positives = 67/185 (36%), Gaps = 28/185 (15%)
Query: 25 GGQSRGSRGRPPGRALRRGSCARGEKRPP---GPT---GGQWRW----------GVSPRP 68
GG S +R P G S A GE P GP GG+ + GVSPRP
Sbjct: 368 GGVSPEARDPPKGENPLCSSEAAGETGPTQVRGPDALGGGRLQGKGREGKAPGEGVSPRP 427
Query: 69 SAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATA--VAAGKHLAVPE 126
+ PP+ R +G A+ + ++ L SA A +G A
Sbjct: 428 APPRLGKPPRSRPP------QGLAQPPETFFFERSRLVPVSAELERAGHGFSGDAEARSG 481
Query: 127 TRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIF-APLQAITNQVRP---QQRP 182
G PA R + P P +P + G Q R+ A L T Q P Q+
Sbjct: 482 DLGARPASRSSLPSAPAPPAQQPQAARHGAAGRDQGRRAAGAQLHDPTTQPSPPTGAQQV 541
Query: 183 EPPPA 187
E PA
Sbjct: 542 EEDPA 546
>gi|51873055 fibulin 2 isoform b precursor [Homo sapiens]
Length = 1184
Score = 44.7 bits (104), Expect = 8e-05
Identities = 59/227 (25%), Positives = 80/227 (35%), Gaps = 33/227 (14%)
Query: 37 GRALRRGSCARGEKRPPGPTGGQWR---------W-GVSPRPSAASATGPPQDRAARGCE 86
G ++ G+ G PP GG + W V PRP+AA+A GPP A+
Sbjct: 213 GGEVQAGAVQAGAGGPPAALGGGSQPLSTIQAPPWPAVLPRPTAAAALGPPAPVQAKARR 272
Query: 87 LREGRAEAGHSSTSQKDTLSKGSAAAA---------TAVAAGKHLAVPETRGGVPARRRE 137
+ E E +++ AA T AG L + E R AR
Sbjct: 273 VTEDSEEEEEEEEEREEMAVTEQLAAGGHRGLDGLPTTAPAGPSLPIQEERAEAGARAEA 332
Query: 138 TANP------PGPGRARPGGSPFG--HRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGS 189
A P +R G P G H P L + P QA+ R +P P S
Sbjct: 333 GARPEENLILDAQATSRSTG-PEGVTHAPSL-GKAALVPTQAVPGSPRDPVKPSPHNILS 390
Query: 190 AARSGRRAQRPGRK--RSPQSAPAESGELSIDRE--EGGPRQAPQGA 232
+ P R+ R PQ P E D PR +P+G+
Sbjct: 391 TSLPDAAWIPPTREVPRKPQVLPHSHVEEDTDPNSVHSIPRSSPEGS 437
>gi|51873053 fibulin 2 isoform a precursor [Homo sapiens]
Length = 1231
Score = 44.7 bits (104), Expect = 8e-05
Identities = 59/227 (25%), Positives = 80/227 (35%), Gaps = 33/227 (14%)
Query: 37 GRALRRGSCARGEKRPPGPTGGQWR---------W-GVSPRPSAASATGPPQDRAARGCE 86
G ++ G+ G PP GG + W V PRP+AA+A GPP A+
Sbjct: 213 GGEVQAGAVQAGAGGPPAALGGGSQPLSTIQAPPWPAVLPRPTAAAALGPPAPVQAKARR 272
Query: 87 LREGRAEAGHSSTSQKDTLSKGSAAAA---------TAVAAGKHLAVPETRGGVPARRRE 137
+ E E +++ AA T AG L + E R AR
Sbjct: 273 VTEDSEEEEEEEEEREEMAVTEQLAAGGHRGLDGLPTTAPAGPSLPIQEERAEAGARAEA 332
Query: 138 TANP------PGPGRARPGGSPFG--HRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGS 189
A P +R G P G H P L + P QA+ R +P P S
Sbjct: 333 GARPEENLILDAQATSRSTG-PEGVTHAPSL-GKAALVPTQAVPGSPRDPVKPSPHNILS 390
Query: 190 AARSGRRAQRPGRK--RSPQSAPAESGELSIDRE--EGGPRQAPQGA 232
+ P R+ R PQ P E D PR +P+G+
Sbjct: 391 TSLPDAAWIPPTREVPRKPQVLPHSHVEEDTDPNSVHSIPRSSPEGS 437
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 43.9 bits (102), Expect = 1e-04
Identities = 51/208 (24%), Positives = 71/208 (34%), Gaps = 18/208 (8%)
Query: 48 GEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSK 107
G +P GP R G P P GP + A G A+ + S + ++
Sbjct: 156 GPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPA-----GPGAAQTLNGSAALLNS-HH 209
Query: 108 GSAAAATAVAAGKHLAVPETRGGVPARRRET------ANPPGPGRARPGGSPFGHRPLLQ 161
+A A + V G +P + P +T A PP P P +P P
Sbjct: 210 AAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAA 269
Query: 162 PRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRK--RSPQSAPAESGELSID 219
P P A RP P PP + A A + G +P APA G +
Sbjct: 270 PP---PPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVS 326
Query: 220 REEG-GPRQAPQGAGHALEGRGRVINGS 246
+ G G A G E RV+ +
Sbjct: 327 GQPGPGAAAAAPAPGVKAESPKRVVQAA 354
Score = 41.2 bits (95), Expect = 8e-04
Identities = 44/154 (28%), Positives = 53/154 (34%), Gaps = 23/154 (14%)
Query: 112 AATAVAAGKHLAVPETRGGV---PARRRETA-----NPPGPGRARPGGSPFGHRPLLQPR 163
AA A A G H+ G PA E A PP GRARPGG PR
Sbjct: 52 AAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPR 111
Query: 164 QIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPA----ESGELSID 219
+ P P + PPP GSA P+ APA +G ++
Sbjct: 112 RPLVP----AGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALA 167
Query: 220 REEG-------GPRQAPQGAGHALEGRGRVINGS 246
G GP P A G + +NGS
Sbjct: 168 ARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGS 201
Score = 35.0 bits (79), Expect = 0.061
Identities = 49/188 (26%), Positives = 65/188 (34%), Gaps = 27/188 (14%)
Query: 35 PPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEA 94
P GRA G G +RP P+ + P P AA PP+ A + A A
Sbjct: 91 PAGRARPGGG---GPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVA 147
Query: 95 GHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGG--- 151
+ +K + AA A AG P PGPG +P G
Sbjct: 148 AGPEPAPAGP-AKPAGPAALAARAG------------PGPGPGPGPGPGPGPGKPAGPGA 194
Query: 152 --SPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPA--GSAARS----GRRAQRPGRK 203
+ G LL AP ++ N P P PA G+ ++ G A
Sbjct: 195 AQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQTPPFVGAAAPPAPAA 254
Query: 204 RSPQSAPA 211
SP +APA
Sbjct: 255 PSPPAAPA 262
Score = 32.0 bits (71), Expect = 0.51
Identities = 45/198 (22%), Positives = 67/198 (33%), Gaps = 23/198 (11%)
Query: 35 PPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEA 94
PP A + G A P GG P P AA+A P G + +
Sbjct: 298 PPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAP------GVKAESPKRVV 351
Query: 95 GHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPF 154
+ + + + G A+ A ++ G P +G +P+ PP PG P G P
Sbjct: 352 QAAPPAAQTLAASGPASTAASMVIG-----PTMQGALPS--PAAVPPPAPG--TPTGLPK 402
Query: 155 GHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESG 214
G + P A T+ +R P + R Q P + Q+ G
Sbjct: 403 GAAGAVTQSLSRTP-TATTSGIRATLTP-------TVLAPRLPQPPQNPTNIQNFQLPPG 454
Query: 215 ELSIDREEGGPRQAPQGA 232
+ + E G PQ A
Sbjct: 455 MVLVRSENGQLLMIPQQA 472
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 43.5 bits (101), Expect = 2e-04
Identities = 53/204 (25%), Positives = 76/204 (37%), Gaps = 31/204 (15%)
Query: 36 PGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAG 95
PG+ +G +GE+ PPGPTG Q G +P + A G P R +G ++G
Sbjct: 1164 PGQKGSKGD--KGEQGPPGPTGPQ---GPIGQPGPSGADGEPGPRGQQGLFGQKG----- 1213
Query: 96 HSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETAN-----PPG-PGRARP 149
D +G V + G P + ET + PPG PG P
Sbjct: 1214 -------DEGPRGFPGPPGPVGL-------QGLPGPPGEKGETGDVGQMGPPGPPGPRGP 1259
Query: 150 GGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSPQSA 209
G+P P P I P A+ + P + EP G G + +R + S S
Sbjct: 1260 SGAPGADGPQGPPGGIGNP-GAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSG 1318
Query: 210 PAESGELSIDREEGGPRQAPQGAG 233
A + GP+ +P G
Sbjct: 1319 AAGPPGPKGPPGDDGPKGSPGPVG 1342
Score = 40.4 bits (93), Expect = 0.001
Identities = 62/242 (25%), Positives = 82/242 (33%), Gaps = 41/242 (16%)
Query: 23 QNGGQSRGSRGRPPGRALRRGSCARGEKRP------PGPTGGQWRWGVSPRPSAASATGP 76
+ GG RG+ G+P R R + RGE+ P PGP G G + P GP
Sbjct: 896 EKGG--RGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGP 953
Query: 77 ------PQDRAARGCELREG-------RAEAGHSSTSQKD-----TLSKGSAAAATAVAA 118
P + G ++G R E G + +G +
Sbjct: 954 QGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGE 1013
Query: 119 GKHLAVPETRG--GVP--ARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITN 174
H P G G+P A + T PGP P G R R + P+ A+
Sbjct: 1014 RGHPGPPGPPGEQGLPGLAGKEGTKGDPGPAGLPGKDGPPGLRGFPGDRGLPGPVGALGL 1073
Query: 175 QVRPQQRPEPPPAGSAARSGRRAQR-----PGRKRSPQSAPAESGELSIDREEGGPRQAP 229
+ P PAGS G PGR PQ P +GE E+G P
Sbjct: 1074 KGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRP-GPQGPPGPAGEKGAPGEKG-----P 1127
Query: 230 QG 231
QG
Sbjct: 1128 QG 1129
Score = 30.0 bits (66), Expect = 2.0
Identities = 56/233 (24%), Positives = 66/233 (28%), Gaps = 49/233 (21%)
Query: 29 RGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELR 88
RG G P R L G K PPGP G G+ +P GP + G +
Sbjct: 672 RGLPGEPGPRGLL------GPKGPPGPPGPPGVTGMDGQPGPKGNVGPQGEPGPPGQQGN 725
Query: 89 EGR----------AEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRET 138
G G K L A GK E G P +
Sbjct: 726 PGAQGLPGPQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGP 785
Query: 139 ANPPGP----------------GRARPGGSP--FGHRPLLQPRQIFAPLQAITNQVRPQQ 180
PGP G G P G + R P P
Sbjct: 786 IGYPGPRGVKGADGIRGLKGTKGEKGEDGFPGFKGDMGIKGDRGEIGP---------PGP 836
Query: 181 RPEPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSIDREEGGP-RQAPQGA 232
R E P G R G P P P E G+L + G P RQ P+G+
Sbjct: 837 RGEDGPEGPKGRGG-----PNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGS 884
Score = 29.6 bits (65), Expect = 2.5
Identities = 61/236 (25%), Positives = 78/236 (33%), Gaps = 48/236 (20%)
Query: 29 RGSRGRP--PGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCE 86
+GS G P PG +G RG PGP G + TGP +R RG
Sbjct: 882 KGSIGFPGFPGANGEKGG--RGTPGKPGPRGQR------------GPTGPRGERGPRGIT 927
Query: 87 LREGRA--EAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGV---PARRRET--- 138
+ G G T K P + G+ P +R ET
Sbjct: 928 GKPGPKGNSGGDGPAGPPGERGPNGPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQ 987
Query: 139 --ANPPG-PGRARPGG-----SPFGHR----PLLQPRQIFAPLQAITNQVRPQQRPEPPP 186
PPG PG P G P G R P P + P A + + +P P
Sbjct: 988 GKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLA----GKEGTKGDPGP 1043
Query: 187 AGSAARSGRRAQRPGRKRSP--QSAPAESGELSIDREEGGPRQAPQGAGHALEGRG 240
AG + G PG + P + P G L + EG P P G + RG
Sbjct: 1044 AGLPGKDG----PPGLRGFPGDRGLPGPVGALGLKGNEGPP--GPPGPAGSPGERG 1093
Score = 28.9 bits (63), Expect = 4.3
Identities = 16/48 (33%), Positives = 19/48 (39%)
Query: 30 GSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPP 77
G G P S G++ PPGP G + R G A GPP
Sbjct: 1372 GQTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEGPP 1419
Score = 28.5 bits (62), Expect = 5.7
Identities = 62/252 (24%), Positives = 84/252 (33%), Gaps = 68/252 (26%)
Query: 29 RGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELR 88
+G+ G PPG GS GE+ GP G G+ RP GP ++ A G
Sbjct: 1074 KGNEG-PPGPPGPAGS--PGER---GPAGAAGPIGIPGRPGPQGPPGPAGEKGAPG---- 1123
Query: 89 EGRAEAGHSSTSQKDTLSKGSAAAATAVAAGK--------HLAVPETRGGVPARRRETAN 140
E G + +D L A G + P +G + +
Sbjct: 1124 ----EKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQKGSKGDKGEQ--G 1177
Query: 141 PPGP-GRARPGGSP-----------------FGHRPLLQPRQIFAP-----LQAI----- 172
PPGP G P G P FG + PR P LQ +
Sbjct: 1178 PPGPTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDEGPRGFPGPPGPVGLQGLPGPPG 1237
Query: 173 ----TNQVRPQQRPEPP----PAGSAARSGRRAQRPGRKRSP-----QSAPAESGELSID 219
T V P PP P+G+ G + PG +P + P E+GE +
Sbjct: 1238 EKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGP-PGGIGNPGAVGEKGEPGEAGEPGLP 1296
Query: 220 REEGGPRQAPQG 231
E G P P+G
Sbjct: 1297 GEGGPP--GPKG 1306
Score = 28.1 bits (61), Expect = 7.4
Identities = 58/222 (26%), Positives = 69/222 (31%), Gaps = 28/222 (12%)
Query: 23 QNGGQSRGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAA 82
+ G PPG G G K PGP G G P A GPP D+
Sbjct: 1310 EKGESGPSGAAGPPGPKGPPGD--DGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGD 1367
Query: 83 RGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPP 142
G E G T + + A PE R G + E
Sbjct: 1368 DG--------EPG--QTGSPGPTGEPGPSGPPGKRGPPGPAGPEGRQGEKGAKGEAGLEG 1417
Query: 143 GPGRARPGGSPFGHRPLLQP---RQIFAPL--QAITNQVRPQQRPEP-PPAGSAARSGRR 196
PG+ P G P G P R I P+ Q + P P P P G G
Sbjct: 1418 PPGKTGPIG-PQGAPGKPGPDGLRGIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKGDS 1476
Query: 197 AQRPGRKRSPQ-----SAPAESGELSIDREEGGPR--QAPQG 231
+ G K P P E GE DR GP+ P+G
Sbjct: 1477 GPK-GEKGHPGLIGLIGPPGEQGEKG-DRGLPGPQGSSGPKG 1516
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 43.5 bits (101), Expect = 2e-04
Identities = 60/221 (27%), Positives = 77/221 (34%), Gaps = 20/221 (9%)
Query: 34 RPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAE 93
RPP +G +G+ PPG G G+ +P + + GPP C
Sbjct: 97 RPPNGQGPQGP--KGDPGPPGIPGRNGDPGIPGQPGSPGSPGPP--GICESCPTGPQNYS 152
Query: 94 AGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETA--NPPG-PGRARPG 150
+ S K ++ G A A P G P PPG PG+A P
Sbjct: 153 PQYDSYDVKSGVAVGGLAGYPGPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPS 212
Query: 151 GSPFGHRPLLQPRQIFAPLQAITNQVRPQQR--PEPP----PAGSAARSGRRAQR--PGR 202
G P G + P RP +R P PP PAG G + R GR
Sbjct: 213 GPP-GPPGAIGPSGPAGKDGESGRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGR 271
Query: 203 --KRSPQSAPAESGELSIDREEGGPRQAPQGAGHALEGRGR 241
++ AP GE + E G P P G A RGR
Sbjct: 272 NGEKGETGAPGLKGENGLPGENGAP--GPMGPRGAPGERGR 310
Score = 43.5 bits (101), Expect = 2e-04
Identities = 62/212 (29%), Positives = 72/212 (33%), Gaps = 29/212 (13%)
Query: 29 RGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELR 88
+G RG P G ARG PPG G G S P GP + A G
Sbjct: 860 KGERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGV 919
Query: 89 EG-RAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPG-PGR 146
G + +AG KGS A A L + G R A PPG PG
Sbjct: 920 SGPKGDAGQPG-------EKGSPGAQGPPGAPGPLGIAGITGA-----RGLAGPPGMPG- 966
Query: 147 ARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSP 206
P GSP P+ + +R P P G +G A PGR +P
Sbjct: 967 --PRGSP-------GPQGVKGESGKPGANGLSGERGPPGPQGLPGLAG-TAGEPGRDGNP 1016
Query: 207 QS--APAESGEL--SIDREEGGPRQAPQGAGH 234
S P G DR E G AP GH
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGH 1048
Score = 42.7 bits (99), Expect = 3e-04
Identities = 63/212 (29%), Positives = 73/212 (34%), Gaps = 47/212 (22%)
Query: 30 GSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASA---TGPPQDRAARGCE 86
G RG PPG A G RG PPGP GG+ G P AA G P +R G
Sbjct: 681 GERG-PPGLAGAPG--LRGGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSP 737
Query: 87 LREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGR 146
+G + G D + G P G P + E P PG
Sbjct: 738 GPKG--DKGEPGGPGADGVPGKDGPRGPTGPIG-----PPGPAGQPGDKGEGGAPGLPGI 790
Query: 147 ARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRKRSP 206
A P GSP G R P P PAG G+ + PG K
Sbjct: 791 AGPRGSP-GERGETGP---------------------PGPAGFPGAPGQNGE-PGGK-GE 826
Query: 207 QSAPAESGELSIDREEGGP---RQAPQGAGHA 235
+ AP E G EGGP P G+G A
Sbjct: 827 RGAPGEKG-------EGGPPGVAGPPGGSGPA 851
Score = 39.7 bits (91), Expect = 0.002
Identities = 65/233 (27%), Positives = 75/233 (32%), Gaps = 54/233 (23%)
Query: 23 QNGGQSRGSRGRPPGRALRRGSCA-RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRA 81
Q G + G PG A RGS RGE PPGP G P A G P +
Sbjct: 775 QPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAG---------FPGAPGQNGEPGGKG 825
Query: 82 ARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANP 141
RG +G +G G A P GV + E +P
Sbjct: 826 ERGAPGEKG----------------EGGPPGVAGPPGGSGPAGPPGPQGV---KGERGSP 866
Query: 142 PGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGR------ 195
GPG A G P G R L P P + P PAG+ G
Sbjct: 867 GGPGAA---GFP-GARGLPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGP 922
Query: 196 --RAQRPGRKRSP--QSAPAESGELSIDREEG-----------GPRQAPQGAG 233
A +PG K SP Q P G L I G GPR +P G
Sbjct: 923 KGDAGQPGEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQG 975
Score = 38.5 bits (88), Expect = 0.005
Identities = 60/223 (26%), Positives = 72/223 (32%), Gaps = 28/223 (12%)
Query: 30 GSRGRP--PGRALRRGSC-ARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCE 86
G RGRP PG A RG+ ARG PGP G G P A GP + G
Sbjct: 306 GERGRPGLPGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAP 365
Query: 87 LREGR-AEAGHS-------------STSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVP 132
+ G GH+ S K + A + + P G P
Sbjct: 366 GQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGAP 425
Query: 133 ARRRETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAAR 192
R A PG A+ P G R I A + EP G
Sbjct: 426 G-LRGGAGEPGKNGAKGEPGPRGER---GEAGIPGVPGAKGEDGKDGSPGEPGANGLPGA 481
Query: 193 SGRRAQRPGRK--RSPQSAPAESGELSIDREEGGPRQA-PQGA 232
+G R PG + P P E G E G P A P+GA
Sbjct: 482 AGERG-APGFRGPAGPNGIPGEKGPAG---ERGAPGPAGPRGA 520
Score = 37.4 bits (85), Expect = 0.012
Identities = 57/211 (27%), Positives = 71/211 (33%), Gaps = 36/211 (17%)
Query: 28 SRGSRGRPPGRALRRGSCARGEKRPPGP------TGGQWRW---GVSPRPSAASATGPPQ 78
S GS G P R G + PPGP GG+ G+ P A GPP
Sbjct: 358 SPGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPG 417
Query: 79 DRAARGCE-LREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRE 137
A G LR G E G + ++ + +G A +P GVP + E
Sbjct: 418 PAGANGAPGLRGGAGEPGKNG-AKGEPGPRGERGEA---------GIP----GVPGAKGE 463
Query: 138 TANPPGPGRARPGGSP--FGHRPLLQPRQIFAPLQAITNQVRPQ-QRPEPPPAGSAARSG 194
PG G P G R R P I + P +R P PAG +G
Sbjct: 464 DGKDGSPGEPGANGLPGAAGERGAPGFRGPAGP-NGIPGEKGPAGERGAPGPAGPRGAAG 522
Query: 195 RRAQRPGRKRSPQSAPAESGELSIDREEGGP 225
PGR P G + GGP
Sbjct: 523 ----EPGR----DGVPGGPGMRGMPGSPGGP 545
Score = 35.8 bits (81), Expect = 0.036
Identities = 55/209 (26%), Positives = 70/209 (33%), Gaps = 24/209 (11%)
Query: 30 GSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELRE 89
G +G L+ + GE PGP G + G RP A G + ARG + +
Sbjct: 273 GEKGETGAPGLKGENGLPGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGSDGQP 332
Query: 90 GRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGV-PARRRETANPPGPGRAR 148
G ++ +KG A + + P RG P PPGP
Sbjct: 333 GPPGPPGTAGFPGSPGAKGEVGPAGSPGSN---GAPGQRGEPGPQGHAGAQGPPGP---- 385
Query: 149 PG--GSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRR--AQRPGRKR 204
PG GSP G + P R P PAG+ G R A PG K
Sbjct: 386 PGINGSPGGKGEM-------GPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPG-KN 437
Query: 205 SPQSAPAESGELSIDREEGGPRQAPQGAG 233
+ P GE R E G P G
Sbjct: 438 GAKGEPGPRGE----RGEAGIPGVPGAKG 462
Score = 33.5 bits (75), Expect = 0.18
Identities = 54/218 (24%), Positives = 67/218 (30%), Gaps = 19/218 (8%)
Query: 25 GGQSRGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARG 84
GG + PPG G PPGP+G + + GV P G P RG
Sbjct: 543 GGPGSDGKPGPPG-----SQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERG 597
Query: 85 CELREG-------RAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRE 137
G E G G T + L GG P +
Sbjct: 598 GPGGPGPQGPPGKNGETG--PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGK 655
Query: 138 TANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRA 197
P G A G+P G P + P A +R P P P G +G
Sbjct: 656 PGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGP-PGPEGGKGAAGPPG 714
Query: 198 QRPGRKRSP--QSAPAESGELSIDREEGGPRQAPQGAG 233
PG +P Q P E G L + G + P G G
Sbjct: 715 P-PGAAGTPGLQGMPGERGGLGSPGPK-GDKGEPGGPG 750
Score = 33.5 bits (75), Expect = 0.18
Identities = 51/216 (23%), Positives = 65/216 (30%), Gaps = 47/216 (21%)
Query: 25 GGQSRGSRGRP--PGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAA 82
G RG G P PG A G PPGP G + G A G P +
Sbjct: 1030 GKGDRGENGSPGAPG--------APGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGS 1081
Query: 83 RGCELREG-RAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANP 141
RG +G R + G +T +G+A G+ R NP
Sbjct: 1082 RGAPGPQGPRGDKG-------ETGERGAA-------------------GIKGHRGFPGNP 1115
Query: 142 PGPGRARPGG--SPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQR 199
PG P G G PR P+ + P P G G R +
Sbjct: 1116 GAPGSPGPAGQQGAIGSPGPAGPR---GPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGE- 1171
Query: 200 PGRKRSPQSAPAESGELSIDREEGGPRQAPQGAGHA 235
R + +P G+ G P G G A
Sbjct: 1172 ----RGSEGSPGHPGQPGPPGPPGAPGPCCGGVGAA 1203
Score = 29.6 bits (65), Expect = 2.5
Identities = 49/199 (24%), Positives = 59/199 (29%), Gaps = 22/199 (11%)
Query: 30 GSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELRE 89
G RG P G A RG A GE G GG G+ P + G P ++G
Sbjct: 507 GERGAP-GPAGPRG--AAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQG---ES 560
Query: 90 GRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARP 149
GR S + G P+ G P + E P GPG P
Sbjct: 561 GRPGPPGPSGPRGQPGVMGFPG-------------PKGNDGAPGKNGERGGPGGPGPQGP 607
Query: 150 GGSPFGHRPLLQPRQIF-APLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRK--RSP 206
G P P + T PQ P G + PG K
Sbjct: 608 PGKNGETGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGA 667
Query: 207 QSAPAESGELSIDREEGGP 225
AP G+ E G P
Sbjct: 668 PGAPGGKGDAGAPGERGPP 686
Score = 27.7 bits (60), Expect = 9.7
Identities = 33/132 (25%), Positives = 39/132 (29%), Gaps = 8/132 (6%)
Query: 30 GSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELRE 89
GS G P G RGE PG G G A +G + G
Sbjct: 1017 GSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAP 1076
Query: 90 GRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGV----PARRRETANPPGP- 144
G A + + Q KG A H P G PA ++ PGP
Sbjct: 1077 GPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPAGQQGAIGSPGPA 1136
Query: 145 ---GRARPGGSP 153
G P G P
Sbjct: 1137 GPRGPVGPSGPP 1148
>gi|239749498 PREDICTED: hypothetical protein [Homo sapiens]
Length = 692
Score = 43.5 bits (101), Expect = 2e-04
Identities = 46/165 (27%), Positives = 63/165 (38%), Gaps = 21/165 (12%)
Query: 67 RPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPE 126
R A A G + A L+ A A SS + G A +A A +H + E
Sbjct: 461 RQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLE 520
Query: 127 TRG---GVPARRRETA-NPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRP 182
RG G P R+T P P R G P G+R A L A+ + P
Sbjct: 521 RRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAGYR---------AGLAAL-------RTP 564
Query: 183 EPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSI-DREEGGPR 226
P PAG+A +RP R + S +++ +E GPR
Sbjct: 565 PPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPR 609
>gi|239743634 PREDICTED: hypothetical protein XP_002342919 [Homo
sapiens]
Length = 692
Score = 43.5 bits (101), Expect = 2e-04
Identities = 46/165 (27%), Positives = 63/165 (38%), Gaps = 21/165 (12%)
Query: 67 RPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPE 126
R A A G + A L+ A A SS + G A +A A +H + E
Sbjct: 461 RQQGAGAGGMSRRLTAARVPLQRPAAAAASSSAAAAAASKLGGAGPGSAEKADRHRRLLE 520
Query: 127 TRG---GVPARRRETA-NPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRP 182
RG G P R+T P P R G P G+R A L A+ + P
Sbjct: 521 RRGQASGNPDTLRQTRPKQPAPLRRAMQGGPAGYR---------AGLAAL-------RTP 564
Query: 183 EPPPAGSAARSGRRAQRPGRKRSPQSAPAESGELSI-DREEGGPR 226
P PAG+A +RP R + S +++ +E GPR
Sbjct: 565 PPAPAGNAGTGTGARKRPEGGRGARYPCGSSSRVAVPSKEPAGPR 609
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 43.5 bits (101), Expect = 2e-04
Identities = 47/196 (23%), Positives = 76/196 (38%), Gaps = 26/196 (13%)
Query: 47 RGEKRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLS 106
R +R P P +P P+ A+A GPP + +R R G A+ SS+S
Sbjct: 493 RYRQRSPSP---------APAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAP 543
Query: 107 KGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGPGRARPGGSPFGHRPLLQPRQIF 166
A+ + P + ARRR R+R R R+
Sbjct: 544 PAPASPWDSKKHRSRDRKPGSHASSSARRR--------SRSRSRSRSTRRRSRSTDRRRG 595
Query: 167 APLQAITNQVRPQQR--PEPPPAGSAARSGRRAQRPGR-------KRSPQSAPAESGELS 217
++ + + R ++R PPPA S++ S RR + G+ K+ + + + + S
Sbjct: 596 GSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRS 655
Query: 218 IDREEGGPRQAPQGAG 233
D E P AP +G
Sbjct: 656 GDGSEKAPAPAPPPSG 671
Score = 36.2 bits (82), Expect = 0.027
Identities = 56/242 (23%), Positives = 89/242 (36%), Gaps = 32/242 (13%)
Query: 12 EISTQVHTSYLQNGGQSRGSRGRPPGRA-LRRGSCARGEKRP--------PGPTGGQWRW 62
++S +V T+ GG + PPG + + G + E+ P PG +
Sbjct: 366 KVSVEVVTA----GGAALPPPLLPPGDSEIEEGEIVQPEEEPRLALSLFRPGGRAARPTP 421
Query: 63 GVSPRPSAASATGPPQDRAARGCELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHL 122
S P+A PP RA G + AE+ Q D G A A A +
Sbjct: 422 AASATPTAQPLPQPPAPRAPEGDDFLSLHAESDGEGALQVDL---GEPAPAPPAADSRWG 478
Query: 123 AVPETRGGVPARR-----RETANPPGPGRARPGGSPFGHRPLLQPRQIFAPLQAITNQVR 177
+ R + RR R + P P A G P + + ++ +A ++
Sbjct: 479 GLDLRRKILTQRRERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSG 538
Query: 178 PQQRPEPPPAGSAARSGR-RAQRPG-------RKRS---PQSAPAESGELSIDREEGGPR 226
Q P P + ++ R R ++PG R+RS +S S DR GG R
Sbjct: 539 TQPAPPAPASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSR 598
Query: 227 QA 228
++
Sbjct: 599 RS 600
>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 42.7 bits (99), Expect = 3e-04
Identities = 54/198 (27%), Positives = 70/198 (35%), Gaps = 34/198 (17%)
Query: 28 SRGSRGRPPGRALRRGSCARGEKRPPGPTGGQWRWGVSPR-PSAASATGPPQDRAARGCE 86
+R + PP RA R G PP G+ R + R P+ +A G P G E
Sbjct: 79 ARSAAWGPPARASRAAGRRAGPAGPPCRAPGRGRAAATRRSPAPGTARGSPA-----GVE 133
Query: 87 LREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHL-------AVPETRGGVPARRRETA 139
G A + T T++ AG A+P + P+ R A
Sbjct: 134 RAGGATAASSAGTRSVPARRLPPPCGGTSLGAGSRALRRPGSAALPRS----PSSSRRWA 189
Query: 140 NPPGPGRARPGGS---PFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGR- 195
PGPG RPG P G P A V P P P AG+ A + R
Sbjct: 190 AMPGPGAPRPGAPGTWPVGFAVAAPP--------AAAASVAP---PPPAVAGAPAAAFRG 238
Query: 196 --RAQRPGRKRSPQSAPA 211
A PG ++APA
Sbjct: 239 WVAAPDPGCTPGTENAPA 256
>gi|195963410 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 1 [Homo sapiens]
Length = 415
Score = 42.7 bits (99), Expect = 3e-04
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 30/188 (15%)
Query: 27 QSRGSRGRPPGRALRRGSCARGE--KRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARG 84
Q+ GS PPG +L G+ ++ + P P ++P P + PP +
Sbjct: 117 QAEGSALGPPGPSLWEGTDSQQPHPRMKPSP--------LTPCPPGVPSPSPPPHKL--- 165
Query: 85 CELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGP 144
EL+ + E S ++ +G + T K + + RGG P R R P P
Sbjct: 166 -ELQTLKLEELTVSELRQQLRLRGLPVSGT-----KSMLLERMRGGAPPRER-----PKP 214
Query: 145 GRA-RPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRK 203
R P G+P+ P L+P+ + A + V+P PP AA + A P
Sbjct: 215 RREDSPAGAPW---PRLKPKALAAARRQ--GSVKPSAASHRPPLPRAADTPGTAPAPTPT 269
Query: 204 RSPQSAPA 211
+P +APA
Sbjct: 270 PAPAAAPA 277
>gi|32698970 MEF2 activating motif and SAP domain containing
transcriptional regulator isoform 2 [Homo sapiens]
Length = 312
Score = 42.7 bits (99), Expect = 3e-04
Identities = 49/188 (26%), Positives = 77/188 (40%), Gaps = 30/188 (15%)
Query: 27 QSRGSRGRPPGRALRRGSCARGE--KRPPGPTGGQWRWGVSPRPSAASATGPPQDRAARG 84
Q+ GS PPG +L G+ ++ + P P ++P P + PP +
Sbjct: 14 QAEGSALGPPGPSLWEGTDSQQPHPRMKPSP--------LTPCPPGVPSPSPPPHKL--- 62
Query: 85 CELREGRAEAGHSSTSQKDTLSKGSAAAATAVAAGKHLAVPETRGGVPARRRETANPPGP 144
EL+ + E S ++ +G + T K + + RGG P R R P P
Sbjct: 63 -ELQTLKLEELTVSELRQQLRLRGLPVSGT-----KSMLLERMRGGAPPRER-----PKP 111
Query: 145 GRA-RPGGSPFGHRPLLQPRQIFAPLQAITNQVRPQQRPEPPPAGSAARSGRRAQRPGRK 203
R P G+P+ P L+P+ + A + V+P PP AA + A P
Sbjct: 112 RREDSPAGAPW---PRLKPKALAAARRQ--GSVKPSAASHRPPLPRAADTPGTAPAPTPT 166
Query: 204 RSPQSAPA 211
+P +APA
Sbjct: 167 PAPAAAPA 174
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,907,308
Number of Sequences: 37866
Number of extensions: 951661
Number of successful extensions: 8619
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 1031
Number of HSP's that attempted gapping in prelim test: 5707
Number of HSP's gapped (non-prelim): 3029
length of query: 248
length of database: 18,247,518
effective HSP length: 100
effective length of query: 148
effective length of database: 14,460,918
effective search space: 2140215864
effective search space used: 2140215864
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.