Guide to the Human Genome
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Name: LOC440829 Sequence: fasta or formatted (547aa) NCBI GI: 169215850
Description:

PREDICTED: transmembrane protein 46-like

Not currently referenced in the text

Other entries for this name:
alt prot {492aa} PREDICTED: transmembrane protein 46-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.3         78           6
 C cysteine            2.7         15           2
 D aspartate           3.1         17           1
 E glutamate           2.7         15           1
 F phenylalanine       1.8         10           1
 G glycine            11.7         64           3
 H histidine           1.3          7           1
 I isoleucine          0.4          2           1
 K lysine              1.5          8           2
 L leucine             8.2         45           3
 M methionine          0.9          5           1
 N asparagine          1.8         10           2
 P proline            16.3         89           2
 Q glutamine           3.1         17           1
 R arginine           12.6         69           2
 S serine              6.4         35           2
 T threonine           4.2         23           2
 V valine              4.0         22           1
 W tryptophan          0.7          4           1
 Y tyrosine            2.2         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: transmembrane protein 46-like 
LOC440829             0.825   PREDICTED: transmembrane protein 46-like 
LOC729993             0.133   hypothetical protein LOC729993 isoform 1 
LOC729993             0.129   hypothetical protein LOC729993 isoform 2 
LOC729956             0.098   hypothetical protein LOC729956 
FLJ45455              0.096   hypothetical protein LOC388336 
FLJ22184              0.044   PREDICTED: hypothetical protein FLJ22184 
KIAA1522              0.043   hypothetical protein LOC57648 
FLJ22184              0.040   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.038   PREDICTED: hypothetical protein FLJ22184 
TAF4                  0.037   TBP-associated factor 4 
SAMD1                 0.037   sterile alpha motif domain containing 1 
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.035   WAS/WASL interacting protein family, member 1 
PRB1                  0.035   proline-rich protein BstNI subfamily 1 isoform 1 pre...
SRCAP                 0.035   Snf2-related CBP activator protein 
NACA                  0.035   nascent polypeptide-associated complex alpha subuni...
PELP1                 0.033   proline, glutamic acid and leucine rich protein 1 [...
CASKIN2               0.033   cask-interacting protein 2 isoform b 
CASKIN2               0.033   cask-interacting protein 2 isoform a 
PRB2                  0.031   proline-rich protein BstNI subfamily 2 
RTN4                  0.031   reticulon 4 isoform A 
SYN1                  0.030   synapsin I isoform Ia 
MAPK1IP1L             0.030   MAPK-interacting and spindle-stabilizing protein [Ho...
ZFPM1                 0.030   zinc finger protein, multitype 1 
RTN4                  0.029   reticulon 4 isoform B 
RTN4                  0.029   reticulon 4 isoform D 
PTPN23                0.029   protein tyrosine phosphatase, non-receptor type 23 [...
SMARCA4               0.029   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.029   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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