Guide to the Human Genome
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Name: LOC100288108 Sequence: fasta or formatted (692aa) NCBI GI: 239743634
Description:

PREDICTED: hypothetical protein XP_002342919

Not currently referenced in the text

Other entries for this name:
alt mRNA {692aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         84           6
 C cysteine            1.6         11           2
 D aspartate           4.8         33           2
 E glutamate           6.8         47           3
 F phenylalanine       1.7         12           2
 G glycine            11.3         78           2
 H histidine           4.6         32           2
 I isoleucine          1.4         10           1
 K lysine              2.7         19           2
 L leucine            10.5         73           3
 M methionine          0.7          5           1
 N asparagine          1.4         10           1
 P proline             8.4         58           3
 Q glutamine           5.9         41           2
 R arginine            8.2         57           2
 S serine              5.2         36           3
 T threonine           3.3         23           2
 V valine              7.4         51           3
 W tryptophan          0.7          5           2
 Y tyrosine            1.0          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342919 
LOC100288108          1.000   PREDICTED: hypothetical protein 
SCARF2                0.018   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.018   scavenger receptor class F, member 2 isoform 2 [Homo...
LOC100293375          0.017   PREDICTED: hypothetical protein 
LOC441056             0.017   PREDICTED: double homeobox, 4-like 
OGFR                  0.016   opioid growth factor receptor 
LOC100290946          0.015   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.015   PREDICTED: hypothetical protein XP_002344246 
TAF4                  0.014   TBP-associated factor 4 
LOC440017             0.014   PREDICTED: similar to double homeobox, 4 
LOC728022             0.014   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.014   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.014   PREDICTED: similar to double homeobox, 4 
LOC399839             0.014   PREDICTED: similar to double homeobox, 4 
LOC440013             0.014   PREDICTED: similar to double homeobox, 4 
TCOF1                 0.014   Treacher Collins-Franceschetti syndrome 1 isoform f...
TCOF1                 0.014   Treacher Collins-Franceschetti syndrome 1 isoform e...
TCOF1                 0.014   Treacher Collins-Franceschetti syndrome 1 isoform d...
TCOF1                 0.014   Treacher Collins-Franceschetti syndrome 1 isoform b ...
TCOF1                 0.014   Treacher Collins-Franceschetti syndrome 1 isoform a ...
TCOF1                 0.014   Treacher Collins-Franceschetti syndrome 1 isoform c ...
SPEG                  0.014   SPEG complex locus 
MAP3K1                0.014   mitogen-activated protein kinase kinase kinase 1 [H...
LOC653548             0.014   PREDICTED: double homeobox, 4-like 
DUX4                  0.014   double homeobox, 4 
LOC728410             0.014   double homeobox, 4-like 
LOC653543             0.014   double homeobox, 4-like 
LOC653545             0.014   double homeobox, 4-like 
LOC653544             0.014   double homeobox, 4-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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