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Search of human proteins with 239742642
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742642 PREDICTED: hypothetical protein XP_002342587 [Homo
sapiens]
(59 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|169168318 PREDICTED: similar to hCG1644658 [Homo sapiens] 117 2e-27
gi|169168021 PREDICTED: similar to hCG1644658 [Homo sapiens] 117 2e-27
gi|239742642 PREDICTED: hypothetical protein XP_002342587 [Homo ... 117 2e-27
gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens] 95 1e-20
gi|169167838 PREDICTED: similar to hCG2002932 [Homo sapiens] 88 1e-18
gi|239748566 PREDICTED: similar to hCG2002932 [Homo sapiens] 88 1e-18
gi|239742549 PREDICTED: hypothetical protein LOC345645 [Homo sap... 88 1e-18
gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens] 50 3e-07
gi|89064750 PREDICTED: similar to proteasome 26S ATPase subunit ... 49 7e-07
gi|24430155 proteasome 26S ATPase subunit 4 isoform 2 [Homo sapi... 49 7e-07
gi|5729991 proteasome 26S ATPase subunit 4 isoform 1 [Homo sapiens] 49 7e-07
gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens] 48 2e-06
gi|5901990 katanin p60 subunit A 1 [Homo sapiens] 42 8e-05
gi|157671927 spermatogenesis associated 5 [Homo sapiens] 42 1e-04
gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens] 41 2e-04
gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens] 39 0.001
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens] 38 0.002
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens] 38 0.002
gi|6005942 valosin-containing protein [Homo sapiens] 38 0.002
gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens] 38 0.002
gi|153792536 ATPase family, AAA domain containing 2B [Homo sapiens] 34 0.022
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 33 0.038
gi|4505725 peroxin1 [Homo sapiens] 32 0.14
gi|118582286 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase... 30 0.55
gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens] 29 0.71
gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens] 27 2.7
gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens] 27 3.5
gi|31742536 fidgetin-like 1 [Homo sapiens] 27 4.6
gi|112789543 fidgetin-like 1 [Homo sapiens] 27 4.6
gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo... 26 7.9
>gi|169168318 PREDICTED: similar to hCG1644658 [Homo sapiens]
Length = 59
Score = 117 bits (293), Expect = 2e-27
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59
MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG
Sbjct: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59
>gi|169168021 PREDICTED: similar to hCG1644658 [Homo sapiens]
Length = 59
Score = 117 bits (293), Expect = 2e-27
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59
MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG
Sbjct: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59
>gi|239742642 PREDICTED: hypothetical protein XP_002342587 [Homo
sapiens]
Length = 59
Score = 117 bits (293), Expect = 2e-27
Identities = 59/59 (100%), Positives = 59/59 (100%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59
MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG
Sbjct: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIREG 59
>gi|24430151 proteasome 26S ATPase subunit 1 [Homo sapiens]
Length = 440
Score = 95.1 bits (235), Expect = 1e-20
Identities = 47/48 (97%), Positives = 48/48 (100%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED+
Sbjct: 372 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDF 419
>gi|169167838 PREDICTED: similar to hCG2002932 [Homo sapiens]
Length = 415
Score = 88.2 bits (217), Expect = 1e-18
Identities = 43/48 (89%), Positives = 45/48 (93%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
MTLA+DVTLDDLIMAKDD SGADIKAICTEAGLMALRE RMK TNED+
Sbjct: 347 MTLANDVTLDDLIMAKDDFSGADIKAICTEAGLMALREHRMKATNEDF 394
>gi|239748566 PREDICTED: similar to hCG2002932 [Homo sapiens]
Length = 415
Score = 88.2 bits (217), Expect = 1e-18
Identities = 43/48 (89%), Positives = 45/48 (93%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
MTLA+DVTLDDLIMAKDD SGADIKAICTEAGLMALRE RMK TNED+
Sbjct: 347 MTLANDVTLDDLIMAKDDFSGADIKAICTEAGLMALREHRMKATNEDF 394
>gi|239742549 PREDICTED: hypothetical protein LOC345645 [Homo
sapiens]
Length = 415
Score = 88.2 bits (217), Expect = 1e-18
Identities = 43/48 (89%), Positives = 45/48 (93%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
MTLA+DVTLDDLIMAKDD SGADIKAICTEAGLMALRE RMK TNED+
Sbjct: 347 MTLANDVTLDDLIMAKDDFSGADIKAICTEAGLMALREHRMKATNEDF 394
>gi|21361144 proteasome 26S ATPase subunit 3 [Homo sapiens]
Length = 439
Score = 50.4 bits (119), Expect = 3e-07
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYID 50
M ++ DV ++L DD +GA KA+C EAG++ALR ++T+EDY++
Sbjct: 373 MNVSPDVNYEELARCTDDFNGAQCKAVCVEAGMIALRRGATELTHEDYME 422
>gi|89064750 PREDICTED: similar to proteasome 26S ATPase subunit 4
[Homo sapiens]
Length = 414
Score = 49.3 bits (116), Expect = 7e-07
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIRE 58
M L+++V L+D + D +SGADI +IC E+G++A+RE R V +D+ K I++
Sbjct: 348 MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 405
>gi|24430155 proteasome 26S ATPase subunit 4 isoform 2 [Homo
sapiens]
Length = 387
Score = 49.3 bits (116), Expect = 7e-07
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIRE 58
M L+++V L+D + D +SGADI +IC E+G++A+RE R V +D+ K I++
Sbjct: 321 MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 378
>gi|5729991 proteasome 26S ATPase subunit 4 isoform 1 [Homo sapiens]
Length = 418
Score = 49.3 bits (116), Expect = 7e-07
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIRE 58
M L+++V L+D + D +SGADI +IC E+G++A+RE R V +D+ K I++
Sbjct: 352 MNLSEEVDLEDYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTVIKK 409
>gi|24497435 proteasome 26S ATPase subunit 5 [Homo sapiens]
Length = 406
Score = 47.8 bits (112), Expect = 2e-06
Identities = 22/48 (45%), Positives = 30/48 (62%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
M L + L + SGA++K +CTEAG+ ALRERR+ VT ED+
Sbjct: 336 MNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDF 383
>gi|5901990 katanin p60 subunit A 1 [Homo sapiens]
Length = 491
Score = 42.4 bits (98), Expect = 8e-05
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEI 56
+ LADDV L + + SGADI +C +A LMA+R R +T E+ + SK E+
Sbjct: 398 LELADDVDLASIAENMEGYSGADITNVCRDASLMAMRRRIEGLTPEEIRNLSKEEM 453
>gi|157671927 spermatogenesis associated 5 [Homo sapiens]
Length = 893
Score = 41.6 bits (96), Expect = 1e-04
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRE 38
M ++++V LD+LI+ D SGA+I A+C EA L+AL E
Sbjct: 813 MPVSNEVDLDELILQTDAYSGAEIVAVCREAALLALEE 850
Score = 30.4 bits (67), Expect = 0.32
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 21 GADIKAICTEAGLMALRERRMKVTN 45
GAD+K +C EAGL ALR K N
Sbjct: 561 GADLKVLCNEAGLCALRRILKKQPN 585
>gi|4506209 proteasome 26S ATPase subunit 2 [Homo sapiens]
Length = 433
Score = 41.2 bits (95), Expect = 2e-04
Identities = 17/50 (34%), Positives = 33/50 (66%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYID 50
M++ D+ + L + +GA+I+++CTEAG+ A+R RR T +D+++
Sbjct: 362 MSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARRKIATEKDFLE 411
>gi|229577436 spermatogenesis associated 5-like 1 [Homo sapiens]
Length = 753
Score = 38.9 bits (89), Expect = 0.001
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSK 53
M + DV+L++L SGAD++ +CTEA L+AL+E + T F K
Sbjct: 669 MPIGPDVSLENLAAETCFFSGADLRNLCTEAALLALQENGLDATTVKQEHFLK 721
>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 3 LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIR 57
L D+ L+D+ + SGADI +C +A LMA+R R ++ E+ SK E++
Sbjct: 399 LDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQ 453
>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
Length = 490
Score = 38.1 bits (87), Expect = 0.002
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 3 LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEIR 57
L D+ L+D+ + SGADI +C +A LMA+R R ++ E+ SK E++
Sbjct: 399 LDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRRINGLSPEEIRALSKEELQ 453
>gi|6005942 valosin-containing protein [Homo sapiens]
Length = 806
Score = 37.7 bits (86), Expect = 0.002
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNED 47
M LADDV L+ + GAD+ A+C+EA L A+R++ + ED
Sbjct: 388 MKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLED 434
Score = 29.6 bits (65), Expect = 0.55
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 3 LADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRE 38
+A DV L+ L + SGAD+ IC A +A+RE
Sbjct: 666 VAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701
>gi|195539395 proteasome 26S ATPase subunit 6 [Homo sapiens]
Length = 403
Score = 37.7 bits (86), Expect = 0.002
Identities = 15/49 (30%), Positives = 29/49 (59%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDYI 49
+T ++ + ++ D +GAD++ +CTEAG+ A+R V ED++
Sbjct: 334 ITKHGEIDYEAIVKLSDGFNGADLRNVCTEAGMFAIRADHDFVVQEDFM 382
>gi|153792536 ATPase family, AAA domain containing 2B [Homo sapiens]
Length = 1458
Score = 34.3 bits (77), Expect = 0.022
Identities = 15/19 (78%), Positives = 17/19 (89%)
Query: 21 GADIKAICTEAGLMALRER 39
GADIKA+CTEA L+ALR R
Sbjct: 610 GADIKALCTEAALIALRRR 628
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 33.5 bits (75), Expect = 0.038
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 6 DVTLDDLIMAKDDLSGADIKAICTEAGLMALRER--RMKVTNED-YIDFSKIEI 56
D L++L GADIK+IC EA L ALR R ++ T+E +D S I I
Sbjct: 621 DTFLEELAENCVGYCGADIKSICAEAALCALRRRYPQIYTTSEKLQLDLSSINI 674
>gi|4505725 peroxin1 [Homo sapiens]
Length = 1283
Score = 31.6 bits (70), Expect = 0.14
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 1 MTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMAL 36
+ LADDV L + D +GAD+KA+ A L AL
Sbjct: 1024 LPLADDVDLQHVASVTDSFTGADLKALLYNAQLEAL 1059
>gi|118582286 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1
[Homo sapiens]
Length = 471
Score = 29.6 bits (65), Expect = 0.55
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 24 IKAICTEAGLMALRERRMKVTNEDYIDFSKIEIRE 58
I++IC + G++A R++K+ + DYID + ++ E
Sbjct: 157 IESICNDPGIIAENIRQVKLGSPDYIDCDREKVLE 191
>gi|31377644 ATPase family, AAA domain containing 1 [Homo sapiens]
Length = 361
Score = 29.3 bits (64), Expect = 0.71
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 7 VTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDY 48
V L ++ D SG+D+K +C +A L+ +RE + E +
Sbjct: 282 VDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESH 323
>gi|4507173 spastic paraplegia 7 isoform 1 [Homo sapiens]
Length = 795
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/24 (58%), Positives = 14/24 (58%)
Query: 20 SGADIKAICTEAGLMALRERRMKV 43
SGADI IC EA L A RE V
Sbjct: 517 SGADIANICNEAALHAAREGHTSV 540
>gi|5802970 AFG3 ATPase family gene 3-like 2 [Homo sapiens]
Length = 797
Score = 26.9 bits (58), Expect = 3.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 2 TLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALR 37
TL D L SGAD+ +C EA L+A R
Sbjct: 499 TLEKDKLARKLASLTPGFSGADVANVCNEAALIAAR 534
>gi|31742536 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 9 LDDLIMAKDDLSGADIKAICTEAGLMALR 37
++ ++ D SGAD+ +C EA L +R
Sbjct: 593 IEQIVQQSDAFSGADMTQLCREASLGPIR 621
>gi|112789543 fidgetin-like 1 [Homo sapiens]
Length = 674
Score = 26.6 bits (57), Expect = 4.6
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 9 LDDLIMAKDDLSGADIKAICTEAGLMALR 37
++ ++ D SGAD+ +C EA L +R
Sbjct: 593 IEQIVQQSDAFSGADMTQLCREASLGPIR 621
>gi|49574529 hepatocellular carcinoma-associated antigen 66 [Homo
sapiens]
Length = 597
Score = 25.8 bits (55), Expect = 7.9
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 20 SGADIKAICTEAGLMALRERRMKVTNEDYIDFSKIEI 56
S A+IKAI +A + + +R + ED+I++ + EI
Sbjct: 26 SHAEIKAIIKKASDLEYKIQRRTLFKEDFINYVQYEI 62
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,664,503
Number of Sequences: 37866
Number of extensions: 43581
Number of successful extensions: 134
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 33
length of query: 59
length of database: 18,247,518
effective HSP length: 32
effective length of query: 27
effective length of database: 17,035,806
effective search space: 459966762
effective search space used: 459966762
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.