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Search of human proteins with 239742434
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239742434 PREDICTED: hypothetical protein XP_002342514 [Homo
sapiens]
(889 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239748470 PREDICTED: hypothetical protein [Homo sapiens] 1791 0.0
gi|239742434 PREDICTED: hypothetical protein XP_002342514 [Homo ... 1791 0.0
gi|239753928 PREDICTED: hypothetical protein [Homo sapiens] 1543 0.0
gi|48762934 alpha 2 type I collagen [Homo sapiens] 42 0.003
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 42 0.003
gi|61966741 TMF regulated nuclear protein [Homo sapiens] 40 0.007
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 40 0.007
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 40 0.013
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 39 0.028
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 38 0.037
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 38 0.037
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 38 0.037
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 38 0.037
gi|239757699 PREDICTED: hypothetical protein [Homo sapiens] 37 0.062
gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo ... 37 0.062
gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo ... 37 0.062
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 37 0.062
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 37 0.062
gi|146219832 myosin light chain kinase 3 [Homo sapiens] 37 0.062
gi|154759255 collagen, type XXVIII precursor [Homo sapiens] 37 0.062
gi|88702793 slit-like 2 [Homo sapiens] 37 0.062
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.081
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 37 0.081
gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens] 37 0.081
gi|157502197 hypothetical protein LOC9772 [Homo sapiens] 37 0.081
gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens] 37 0.081
gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens] 37 0.11
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 37 0.11
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 36 0.14
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 36 0.14
>gi|239748470 PREDICTED: hypothetical protein [Homo sapiens]
Length = 889
Score = 1791 bits (4638), Expect = 0.0
Identities = 889/889 (100%), Positives = 889/889 (100%)
Query: 1 MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60
MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG
Sbjct: 1 MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60
Query: 61 LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120
LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG
Sbjct: 61 LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120
Query: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180
AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG
Sbjct: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180
Query: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240
VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP
Sbjct: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240
Query: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300
RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS
Sbjct: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300
Query: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360
FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL
Sbjct: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360
Query: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420
STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE
Sbjct: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420
Query: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL
Sbjct: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
Query: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD
Sbjct: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
Query: 541 CAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600
CAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL
Sbjct: 541 CAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600
Query: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660
IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ
Sbjct: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660
Query: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720
QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY
Sbjct: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720
Query: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTEVLEKEGLLQ 780
LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTEVLEKEGLLQ
Sbjct: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTEVLEKEGLLQ 780
Query: 781 GQCNQSQKENNSTQNKPRGKQGEVPTNKSLRPLCILVLPQHRDGKKGSLFSSNDFQGLQH 840
GQCNQSQKENNSTQNKPRGKQGEVPTNKSLRPLCILVLPQHRDGKKGSLFSSNDFQGLQH
Sbjct: 781 GQCNQSQKENNSTQNKPRGKQGEVPTNKSLRPLCILVLPQHRDGKKGSLFSSNDFQGLQH 840
Query: 841 GICHVQGSHTLPRWQFSDNMGSCMRKQYGAEKKGSTAATAHENEHLESH 889
GICHVQGSHTLPRWQFSDNMGSCMRKQYGAEKKGSTAATAHENEHLESH
Sbjct: 841 GICHVQGSHTLPRWQFSDNMGSCMRKQYGAEKKGSTAATAHENEHLESH 889
>gi|239742434 PREDICTED: hypothetical protein XP_002342514 [Homo
sapiens]
Length = 889
Score = 1791 bits (4638), Expect = 0.0
Identities = 889/889 (100%), Positives = 889/889 (100%)
Query: 1 MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60
MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG
Sbjct: 1 MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60
Query: 61 LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120
LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG
Sbjct: 61 LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120
Query: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180
AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG
Sbjct: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180
Query: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240
VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP
Sbjct: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240
Query: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300
RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS
Sbjct: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300
Query: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360
FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL
Sbjct: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360
Query: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420
STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE
Sbjct: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420
Query: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL
Sbjct: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
Query: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD
Sbjct: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
Query: 541 CAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600
CAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL
Sbjct: 541 CAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600
Query: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660
IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ
Sbjct: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660
Query: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720
QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY
Sbjct: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720
Query: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTEVLEKEGLLQ 780
LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTEVLEKEGLLQ
Sbjct: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTEVLEKEGLLQ 780
Query: 781 GQCNQSQKENNSTQNKPRGKQGEVPTNKSLRPLCILVLPQHRDGKKGSLFSSNDFQGLQH 840
GQCNQSQKENNSTQNKPRGKQGEVPTNKSLRPLCILVLPQHRDGKKGSLFSSNDFQGLQH
Sbjct: 781 GQCNQSQKENNSTQNKPRGKQGEVPTNKSLRPLCILVLPQHRDGKKGSLFSSNDFQGLQH 840
Query: 841 GICHVQGSHTLPRWQFSDNMGSCMRKQYGAEKKGSTAATAHENEHLESH 889
GICHVQGSHTLPRWQFSDNMGSCMRKQYGAEKKGSTAATAHENEHLESH
Sbjct: 841 GICHVQGSHTLPRWQFSDNMGSCMRKQYGAEKKGSTAATAHENEHLESH 889
>gi|239753928 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1179
Score = 1543 bits (3994), Expect = 0.0
Identities = 770/771 (99%), Positives = 770/771 (99%)
Query: 1 MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60
MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG
Sbjct: 1 MHGEVGKPDNLQGDTAHHRIPKAYGEVQLPATDPVWAEVSLHRLNPRRQERTGTHHFRKG 60
Query: 61 LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120
LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG
Sbjct: 61 LRILPSVVRLESFRRREALSPAPLAFRGASVLALGPSADSGRFLGARALLARLKVLLSLG 120
Query: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180
AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG
Sbjct: 121 AASSGSPFTLSCRCDTVRVMPGALATGGRSVLMLREEEATVFRAKLGTRGSSWGTLGTDG 180
Query: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240
VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP
Sbjct: 181 VLGSSLGLSGPSEWARQVLFSSGFCLGRFLSGLALGFLKEPLGCRGTSLPGRVLLEPLLP 240
Query: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300
RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS
Sbjct: 241 RGSLCSSAPVEALRTEFWRDHTVSVLLGGFWEGPRDDSSGRLQPAPLLDLVMGMTLRMLS 300
Query: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360
FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL
Sbjct: 301 FSEAVRVRTDLATAPWLRRALPGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSL 360
Query: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420
STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE
Sbjct: 361 STETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSE 420
Query: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL
Sbjct: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
Query: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD
Sbjct: 481 ALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
Query: 541 CAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600
CAEPRLTGSLYLFRRTLTPW RALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL
Sbjct: 541 CAEPRLTGSLYLFRRTLTPWHRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVEL 600
Query: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660
IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ
Sbjct: 601 IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQ 660
Query: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720
QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY
Sbjct: 661 QLHIILTAAPAKCPQLPSCPGALLLLLLLQPLQLPQLLRLPVVVMYLNCFVEFGTEISKY 720
Query: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTE 771
LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTE
Sbjct: 721 LKAFIQFHGFFVFTEKIYKGVGLILELLFPAFQFPQLFYGKLRKNKRTHTE 771
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 42.0 bits (97), Expect = 0.003
Identities = 76/276 (27%), Positives = 100/276 (36%), Gaps = 56/276 (20%)
Query: 387 PTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGLGSLFSGSLLPTDPK 446
P P+ ++ PP G + +P E V + RGL F G P P+
Sbjct: 534 PGPQGVQGGKGEQGPPGPP-GFQGLPGPSGPAGE---VGKPGERGLHGEF-GLPGPAGPR 588
Query: 447 AAL--PGSSGAALPSSSAGLRLPRASLP----MGVRLLLLALRDCGPLCPTDSSSIGLKS 500
PG SGAA P+ G R P G ++ A+ GP P
Sbjct: 589 GERGPPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGP---------- 638
Query: 501 LRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGDCAEPRLTGSLYLFRRTLTPW 560
S +P E + IP GE+G EP L G + R
Sbjct: 639 -------SGLPGE-----------RGAAGIPGGKGEKG----EPGLRGEIGNPGRDGA-- 674
Query: 561 RRALGKAEAWFSGWAAASWLQAGYRGPGLPGA---APGQAVEL-----IGLLRAAGGALQ 612
R A G A A +AG GP P +PG+ E+ G AG A Q
Sbjct: 675 RGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGPRGSPGERGEVGPAGPNGFAGPAGAAGQ 734
Query: 613 EGQQLPV-SRGTQGEAGAAGVRGPVGGAG--GADGP 645
G + ++G +GE G G GPVG AG G +GP
Sbjct: 735 PGAKGERGAKGPKGENGVVGPTGPVGAAGPAGPNGP 770
Score = 37.0 bits (84), Expect = 0.081
Identities = 35/104 (33%), Positives = 43/104 (41%), Gaps = 16/104 (15%)
Query: 583 GYRGPGLPGAAPGQAVE--LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--G 638
G GP P G+ E L G G A G+ RG GE+GAAG GP+G G
Sbjct: 556 GLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGE-----RGPPGESGAAGPTGPIGSRG 610
Query: 639 AGGADGPGVQEREQALCTLLGQQLHIILTAAPAKCPQLPSCPGA 682
G GP + E + +G TA P+ LP GA
Sbjct: 611 PSGPPGPDGNKGEPGVVGAVG-------TAGPSGPSGLPGERGA 647
Score = 34.3 bits (77), Expect = 0.53
Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query: 581 QAGYRGP-GLPG--AAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG 637
+AG GP G PG +PG GL A G A G G++G +G AGVRGP G
Sbjct: 386 EAGSAGPPGPPGLRGSPGSR----GLPGADGRAGVMGPP-----GSRGASGPAGVRGPNG 436
Query: 638 GAGGADGPGV 647
AG PG+
Sbjct: 437 DAGRPGEPGL 446
Score = 33.1 bits (74), Expect = 1.2
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 14/83 (16%)
Query: 572 SGWAAASWLQAGYRGPGLPG--AAPGQ-----AVELIGLLRAAGGALQEGQQLPVSRGTQ 624
+G A+ L PGLPG PG A GL+ G A +G+ G +
Sbjct: 306 TGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGES-----GNK 360
Query: 625 GEAGAAGVRGPVGGAG--GADGP 645
GE G+AG +GP G +G G GP
Sbjct: 361 GEPGSAGPQGPPGPSGEEGKRGP 383
Score = 32.7 bits (73), Expect = 1.5
Identities = 30/75 (40%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
Query: 582 AGYRGPGLPGAAPGQAVELIGLLR------AAGGALQEGQQLPVSR-GTQGEAGAAGVRG 634
A Y G G+ G PG +GL+ AAG +G Q P G G+ G AG RG
Sbjct: 79 AQYDGKGV-GLGPGP----MGLMGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAGARG 133
Query: 635 PVG--GAGGADG-PG 646
P G G G DG PG
Sbjct: 134 PAGPPGKAGEDGHPG 148
Score = 32.7 bits (73), Expect = 1.5
Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 13/72 (18%)
Query: 583 GYRG-PGLPG--AAPGQAVELIGLLRAAGGALQEGQQLPV-SRGTQGEAGAAGVRGPVGG 638
G +G PG PG PGQ G G + G P +RG+ G G G GP+G
Sbjct: 196 GVKGEPGAPGENGTPGQT----GARGLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGS 251
Query: 639 AG-----GADGP 645
AG GA GP
Sbjct: 252 AGPPGFPGAPGP 263
Score = 32.3 bits (72), Expect = 2.0
Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 8/71 (11%)
Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEG----QQLPVSRGTQGEAGAAGVRGPVG 637
AG +GP P G+ G AG A G + P SRG G G AGV GP G
Sbjct: 366 AGPQGPPGPSGEEGKR----GPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVMGPPG 421
Query: 638 GAGGADGPGVQ 648
G + GV+
Sbjct: 422 SRGASGPAGVR 432
Score = 31.6 bits (70), Expect = 3.4
Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 12/60 (20%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG--GADG 644
PG PGA PG E IG + AG A G +GE G G+ GPVG G GA+G
Sbjct: 255 PGFPGA-PGPKGE-IGAVGNAGPA--------GPAGPRGEVGLPGLSGPVGPPGNPGANG 304
Score = 31.2 bits (69), Expect = 4.5
Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 12/69 (17%)
Query: 581 QAGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGG 638
Q G++G G PG IG + AAG G P + G +GE G +G GP G
Sbjct: 941 QPGHKGERGYPGN--------IGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGA 992
Query: 639 AG--GADGP 645
G G GP
Sbjct: 993 VGPRGPSGP 1001
Score = 30.8 bits (68), Expect = 5.8
Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAG 640
AG RGP PG+ GL+ G G P + G G G G GP+G AG
Sbjct: 429 AGVRGPNGDAGRPGEP----GLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAG 484
Query: 641 GADGPG 646
PG
Sbjct: 485 ARGEPG 490
Score = 30.8 bits (68), Expect = 5.8
Identities = 30/85 (35%), Positives = 36/85 (42%), Gaps = 23/85 (27%)
Query: 581 QAGYRGP-GLPG-----AAPGQAVELIGL--------LRAAGGALQEGQQL-----PVSR 621
+AG GP G PG APG ++GL L GA+ E L P +R
Sbjct: 851 EAGTAGPPGTPGPQGLLGAPG----ILGLPGSRGERGLPGVAGAVGEPGPLGIAGPPGAR 906
Query: 622 GTQGEAGAAGVRGPVGGAGGADGPG 646
G G G+ GV G G AG PG
Sbjct: 907 GPPGAVGSPGVNGAPGEAGRDGNPG 931
Score = 30.4 bits (67), Expect = 7.6
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 583 GYRGPGLPGAAPGQAVEL--IGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
G+ GP P PG+ + GL A G +G + G QG G GV+G G G
Sbjct: 493 GFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDG-----NNGAQGPPGPQGVQGGKGEQG 547
Query: 641 GADGPGVQ 648
PG Q
Sbjct: 548 PPGPPGFQ 555
Score = 30.4 bits (67), Expect = 7.6
Identities = 18/37 (48%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 614 GQQLPVSR----GTQGEAGAAGVRGPVGGAGGADGPG 646
G Q PV R G G G AG +GP G AG A PG
Sbjct: 823 GDQGPVGRTGEVGAVGPPGFAGEKGPSGEAGTAGPPG 859
Score = 30.4 bits (67), Expect = 7.6
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 583 GYRG-PGLPGAAPGQAVE-LIGLLRAAGGALQEGQQLPVSR----GTQGEAGAAGVRGPV 636
G+ G GLPG A + G + AG G P + G G G AG+RGP
Sbjct: 1024 GHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPAGPSGPAGKDGRTGHPGTVGPAGIRGPQ 1083
Query: 637 GGAGGADGPG 646
G G A PG
Sbjct: 1084 GHQGPAGPPG 1093
Score = 30.0 bits (66), Expect = 10.0
Identities = 28/68 (41%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAG-GALQEGQQLPVSRGTQGEAGAAGV---RGPVGG 638
G GP P PG A L G AAG + LP RG G GAAG RG VG
Sbjct: 289 GLSGPVGPPGNPG-ANGLTGAKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGE 347
Query: 639 AGGADGPG 646
G A G
Sbjct: 348 PGPAGSKG 355
Score = 30.0 bits (66), Expect = 10.0
Identities = 28/80 (35%), Positives = 32/80 (40%), Gaps = 15/80 (18%)
Query: 582 AGYRGP-GLPG-----AAPGQAVEL--IGLLRAAGGALQEGQQ-------LPVSRGTQGE 626
AG GP GLPG PG E GL G ++G + P G G+
Sbjct: 633 AGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGD 692
Query: 627 AGAAGVRGPVGGAGGADGPG 646
G AG GP G AG PG
Sbjct: 693 RGEAGAAGPAGPAGPRGSPG 712
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 42.0 bits (97), Expect = 0.003
Identities = 29/73 (39%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQ---------LPVSRGTQGEAGAAGVR 633
G+ GP P PGQ + RA GG QE Q LP G G GA G+R
Sbjct: 645 GFLGPPGPAGTPGQIDCDTDVKRAVGGDRQEAIQPGCIGGPKGLPGLPGPPGPTGAKGLR 704
Query: 634 GPVGGAGGADGPG 646
G G AG GPG
Sbjct: 705 GIPGFAGADGGPG 717
Score = 32.7 bits (73), Expect = 1.5
Identities = 30/80 (37%), Positives = 34/80 (42%), Gaps = 17/80 (21%)
Query: 583 GYRGP-GLPGAA--PGQAVEL-----IGLLRAAGGALQEGQQ-------LPVSRGTQGEA 627
GYRGP G PG+A PG + G G A G Q LP +G +GE
Sbjct: 1293 GYRGPPGPPGSAALPGSKGDTGNPGAPGTPGTKGWAGDSGPQGRPGVFGLPGEKGPRGEQ 1352
Query: 628 GAAGVRGPVGGAG--GADGP 645
G G GP G G G GP
Sbjct: 1353 GFMGNTGPTGAVGDRGPKGP 1372
Score = 32.0 bits (71), Expect = 2.6
Identities = 40/121 (33%), Positives = 47/121 (38%), Gaps = 25/121 (20%)
Query: 580 LQAGYRG-PGLPGAA--PGQAVEL--IGLLRAAGGALQEGQQ---LPVSRGTQGEAGAAG 631
L G RG PG PGA PG E GL G ++ +G Q LP G +G G G
Sbjct: 357 LAKGARGDPGFPGAQGEPGSQGEPGDPGLPGPPGLSIGDGDQRRGLPGEMGPKGFIGDPG 416
Query: 632 VRGPVGGAGGADG----------PGVQEREQALCTLLGQQLHIILTAAPAKCPQLPSCPG 681
+ GG G DG PG + L L G + A P LP PG
Sbjct: 417 IPALYGGPPGPDGKRGPPGPPGLPGPPGPDGFLFGLKGAK-------GRAGFPGLPGSPG 469
Query: 682 A 682
A
Sbjct: 470 A 470
Score = 31.6 bits (70), Expect = 3.4
Identities = 27/73 (36%), Positives = 31/73 (42%), Gaps = 12/73 (16%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
PGLPG PG L GL A G A G G G+ G RGP G G A
Sbjct: 437 PGLPGP-PGPDGFLFGLKGAKGRA-----------GFPGLPGSPGARGPKGWKGDAGECR 484
Query: 647 VQEREQALCTLLG 659
E ++A+ L G
Sbjct: 485 CTEGDEAIKGLPG 497
Score = 30.4 bits (67), Expect = 7.6
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 16/106 (15%)
Query: 583 GYRGP-GLPG-----AAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGP 635
G RGP G PG PG+ G A G A +G+ + G +G+ G G +GP
Sbjct: 1408 GRRGPPGAPGEMGPQGPPGEP----GFRGAPGKAGPQGRGGVSAVPGFRGDEGPIGHQGP 1463
Query: 636 VGGAGGADGPGVQEREQALCTLLGQQLHI-ILTAAPAKCPQLPSCP 680
+G G PG L + G+ + I L ++ Q P CP
Sbjct: 1464 IGQEGAPGRPG----SPGLPGMPGRSVSIGYLLVKHSQTDQEPMCP 1505
>gi|61966741 TMF regulated nuclear protein [Homo sapiens]
Length = 227
Score = 40.4 bits (93), Expect = 0.007
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 590 PGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQE 649
P PGQ+ L A+ GA ++ + + R QG +G AG+ GP GG+G A G G +
Sbjct: 44 PTPTPGQSPPLPDAAGASAGAAEDQE---LQRWRQGASGIAGLAGPGGGSGAAAGAGGRA 100
Query: 650 REQA 653
E A
Sbjct: 101 LELA 104
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 40.4 bits (93), Expect = 0.007
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
+ G GP P PG V+ GL G P RG QG G G RGP+G G
Sbjct: 633 EKGDVGPAGPPGVPGSVVQQEGLKGEQGA--------PGPRGHQGAPGPPGARGPIGPEG 684
Query: 641 GADGPGVQ 648
PG+Q
Sbjct: 685 RDGPPGLQ 692
Score = 34.3 bits (77), Expect = 0.53
Identities = 39/133 (29%), Positives = 55/133 (41%), Gaps = 14/133 (10%)
Query: 554 RRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGP-GLPGAAPGQAVELIGLLRAAGGALQ 612
+R TP +G + A + G GP GLPG P + IG + A G +
Sbjct: 458 QRPPTPGSEQIGFLKTINCSCPAGEKGEMGVAGPMGLPG--PKGDIGAIGPVGAPGPKGE 515
Query: 613 EGQQL--PVSRGTQGEAGAAGVRGPVG--GAGGADGPGVQEREQALCTLLGQQLHIILTA 668
+G P +G +GE G+ G+ GP G G+ G G + E L +G +
Sbjct: 516 KGDVGIGPFGQGEKGEKGSLGLPGPPGRDGSKGMRGEPGELGEPGLPGEVGMR------- 568
Query: 669 APAKCPQLPSCPG 681
P P LP PG
Sbjct: 569 GPQGPPGLPGPPG 581
Score = 33.5 bits (75), Expect = 0.90
Identities = 40/130 (30%), Positives = 49/130 (37%), Gaps = 27/130 (20%)
Query: 530 IPRANGERG-----GDCAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGY 584
+P G+RG G P L G+ LF TP R G+ G
Sbjct: 829 LPGLKGDRGEKGEAGPAGPPGLPGTTSLF----TPHPRMPGEQGP------------KGE 872
Query: 585 RG-PGLPG--AAPGQAVEL--IGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGG 638
+G PGLPG G+ EL G G QEG P + G G G G GP G
Sbjct: 873 KGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAPGPSGP 932
Query: 639 AGGADGPGVQ 648
G PG++
Sbjct: 933 PGSVGAPGLR 942
Score = 33.5 bits (75), Expect = 0.90
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G+ GP P PG+ G+ G + G+ P +G +G+ G G +GP GG G
Sbjct: 1360 GFLGPRGPPGEPGEK----GVPGKEGVPGKPGE--PGFKGERGDPGIKGDKGPPGGKGQP 1413
Query: 643 DGPGV 647
PG+
Sbjct: 1414 GDPGI 1418
Score = 32.7 bits (73), Expect = 1.5
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 18/126 (14%)
Query: 531 PRANGERG--GDCAEPRLTGSLYLFRRT-------LTPWRRALGKAEAWFSGWAAASWLQ 581
PR GE+G G+ +P L G L R T A G+ A + AA +
Sbjct: 861 PRMPGEQGPKGEKGDPGLPGEPGLQGRPGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGA 920
Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGG 641
G+ G P PG +G G ++G+ RG +G AG G GPVG G
Sbjct: 921 PGHVGAPGPSGPPGS----VGAPGLRGTPGKDGE-----RGEKGAAGEEGSPGPVGPRGD 971
Query: 642 ADGPGV 647
PG+
Sbjct: 972 PGAPGL 977
Score = 32.0 bits (71), Expect = 2.6
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 10/107 (9%)
Query: 583 GYRG-PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGG 641
G RG PG+PG+ + IG+ G + G + S G++G G G +GP G G
Sbjct: 1025 GDRGAPGIPGSPGSRGDPGIGVAGPPGPSGPPGDK--GSPGSRGLPGFPGPQGPAGRDGA 1082
Query: 642 ADGPGVQ--EREQALCTLLGQ-QLHIILTAAPAKCPQ----LPSCPG 681
PG + + L +LL ++++ CP LP PG
Sbjct: 1083 PGNPGERGPPGKPGLSSLLSPGDINLLAKDVCNDCPPGPPGLPGLPG 1129
Score = 30.4 bits (67), Expect = 7.6
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 581 QAGYRGP----GLPGAAPGQ--AVELIGLLRAAGGALQEGQQ-------LPVSRGTQGEA 627
+ G RGP GLPG PG+ A L G G ++G++ P G QG
Sbjct: 564 EVGMRGPQGPPGLPGP-PGRVGAPGLQGERGEKGTRGEKGERGLDGFPGKPGDTGQQGRP 622
Query: 628 GAAGVRGP---VGGAGGADGPGV 647
G +GV GP G G A PGV
Sbjct: 623 GPSGVAGPQGEKGDVGPAGPPGV 645
Score = 30.4 bits (67), Expect = 7.6
Identities = 25/72 (34%), Positives = 29/72 (40%), Gaps = 18/72 (25%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAG--GAD 643
PGLPG G+ G + G V +G QG G G GP G G GAD
Sbjct: 1155 PGLPGPP--------GIAGPQGSQGERGADGEVGQKGDQGHPGVPGFMGPPGNPGPPGAD 1206
Query: 644 G-------PGVQ 648
G PG+Q
Sbjct: 1207 GIAGAAGPPGIQ 1218
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 39.7 bits (91), Expect = 0.013
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G RGP P PG ++IG EG LP +G G +G G RGP+G G
Sbjct: 1338 GERGPRGPKGEPGAPGQVIG---------GEGPGLPGRKGDPGPSGPPGPRGPLGDPGPR 1388
Query: 643 DGPGV 647
PG+
Sbjct: 1389 GPPGL 1393
Score = 38.5 bits (88), Expect = 0.028
Identities = 35/103 (33%), Positives = 42/103 (40%), Gaps = 22/103 (21%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS----RGTQGEAGAAGVRGPVGG 638
G+RGP P PG G A ++G + P G G+ GAAG GP G
Sbjct: 1749 GFRGPPGPQGDPG----------VRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPSGPNGA 1798
Query: 639 AGGADGPGVQEREQALCTLLGQQLHIILTAAPAKCPQLPSCPG 681
AG A PG L L G+Q P+ P LP PG
Sbjct: 1799 AGKAGDPG----RDGLPGLRGEQ----GLPGPSGPPGLPGKPG 1833
Score = 38.1 bits (87), Expect = 0.037
Identities = 85/296 (28%), Positives = 101/296 (34%), Gaps = 36/296 (12%)
Query: 376 GLEETWLSPISPTPEDMEPSPSPPSSGSP-PLGLESVPSEQSRVSEQSVVSEMQNRGL-G 433
GL T P P P+ P P SG P GL+ E +Q + G+ G
Sbjct: 2079 GLPGTPGPPGPPGPKVSVDEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGVPGIKG 2138
Query: 434 SLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASL-PMGVRLLLLALRDCGPLCPTD 492
D LPG G A P GL+ PR P+G D GP P
Sbjct: 2139 DRGEPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGH------GDPGP--PGA 2190
Query: 493 SSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERG--GDCAEPRLTGSL 550
G + + P E + +P G G G P L G +
Sbjct: 2191 PGLAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQV 2250
Query: 551 YLFRRTLTPWRR-ALGKAEAWFSGWAAASWLQAGYRGP-GLPG--AAPGQAVELIGLLRA 606
+ P R A GK S S G GP G PG APGQAV +GL A
Sbjct: 2251 GETGKPGAPGRDGASGKDGDRGSPGVPGSPGLPGPVGPKGEPGPTGAPGQAV--VGLPGA 2308
Query: 607 AGGALQEG---------------QQLPVSRGTQGEAGAAGVRGPVG--GAGGADGP 645
G G + LP RG +GEAG AG G G G GA GP
Sbjct: 2309 KGEKGAPGGLAGDLVGEPGAKGDRGLPGPRGEKGEAGRAGEPGDPGEDGQKGAPGP 2364
Score = 35.0 bits (79), Expect = 0.31
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 14/75 (18%)
Query: 582 AGYRG----PGLPG--AAPGQAVELIGLLRAAGGALQEGQQLPVS----RGTQGEAGAAG 631
AG++G PG+PG APG+ GL+ G +GQ P +G +G G G
Sbjct: 2655 AGHKGEMGEPGVPGQSGAPGKE----GLIGPKGDRGFDGQPGPKGDQGEKGERGTPGIGG 2710
Query: 632 VRGPVGGAGGADGPG 646
GP G G A PG
Sbjct: 2711 FPGPSGNDGSAGPPG 2725
Score = 33.5 bits (75), Expect = 0.90
Identities = 17/34 (50%), Positives = 18/34 (52%)
Query: 617 LPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQER 650
LP G +G GA GVRGPVG G PG R
Sbjct: 1650 LPGKAGERGLRGAPGVRGPVGEKGDQGDPGEDGR 1683
Score = 33.1 bits (74), Expect = 1.2
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 580 LQAGYRGPGLPGAAPGQAVE--LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG 637
L G RGP P G+ + + GL AGG + G+ P RG +GE G G +G G
Sbjct: 2019 LALGERGPPGPSGLAGEPGKPGIPGLPGRAGGVGEAGR--PGERGERGEKGERGEQGRDG 2076
Query: 638 --GAGGADGP 645
G G GP
Sbjct: 2077 PPGLPGTPGP 2086
Score = 32.7 bits (73), Expect = 1.5
Identities = 29/68 (42%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGGAGGADGP 645
PGLPG PG E G G +G + P G GEAG G RGP G AG P
Sbjct: 1455 PGLPGQ-PGSPGEQ-GPRGPPGAIGPKGDRGFP---GPLGEAGEKGERGPPGPAGSRGLP 1509
Query: 646 GVQEREQA 653
GV R A
Sbjct: 1510 GVAGRPGA 1517
Score = 32.7 bits (73), Expect = 1.5
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVG--GAGGAD 643
PGLPGA PG ++G G + GQ P RG G G G+ GP+G G G+
Sbjct: 2394 PGLPGA-PG----VVGFPGQTGPRGEMGQPGPSGERGLAGPPGREGIPGPLGPPGPPGSV 2448
Query: 644 GP 645
GP
Sbjct: 2449 GP 2450
Score = 30.4 bits (67), Expect = 7.6
Identities = 28/84 (33%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 581 QAGYRGP-GLPG-----AAPGQAVELIGLLRAAG---GALQE---------GQQLPVSRG 622
+ G +G GLPG PG + LL AG AL+E G LPV
Sbjct: 1917 ETGSKGEQGLPGERGLRGEPGSVPNVDRLLETAGIKASALREIVETWDESSGSFLPVPER 1976
Query: 623 TQGEAGAAGVRGPVGGAGGADGPG 646
+G G +G +GP G G PG
Sbjct: 1977 RRGPKGDSGEQGPPGKEGPIGFPG 2000
Score = 30.0 bits (66), Expect = 10.0
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 17/81 (20%)
Query: 587 PGLPGAA-----PGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG- 640
PGLPG PG V + G L Q P +G +GE G+ G +GP G G
Sbjct: 2078 PGLPGTPGPPGPPGPKVSV----DEPGPGLSGEQGPPGLKGAKGEPGSNGDQGPKGDRGV 2133
Query: 641 -------GADGPGVQEREQAL 654
G GP Q+ L
Sbjct: 2134 PGIKGDRGEPGPRGQDGNPGL 2154
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 38.5 bits (88), Expect = 0.028
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 583 GYRG-PGLPG----AAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPV 636
G RG PG+ G P ++G + A G +EG + P R G +G+ G+ G+RGP
Sbjct: 232 GIRGYPGMAGPKGETGPHGYKGMVGAIGATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQ 291
Query: 637 G--GAGGADGP 645
G G GA GP
Sbjct: 292 GITGPKGATGP 302
Score = 32.0 bits (71), Expect = 2.6
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAGG 641
G+ GP PG E IG G +G++ PV + G QG G G +GP G G
Sbjct: 361 GFSGPPGKEGEPGPRGE-IGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPGIPGP 419
Query: 642 ADGPGVQ 648
PGV+
Sbjct: 420 QGLPGVK 426
Score = 30.8 bits (68), Expect = 5.8
Identities = 20/41 (48%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 608 GGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQ 648
G A Q GQ P S G QG AG G G GG G PG Q
Sbjct: 319 GSAGQAGQ--PGSPGHQGLAGVPGQPGTKGGPGDQGEPGPQ 357
Score = 30.4 bits (67), Expect = 7.6
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
+ G PG+PG PG + GL G A+ S G GEAG G+ GPVG G
Sbjct: 608 EVGRGHPGMPGP-PG----IPGLPGRPGQAINGKDGDRGSPGAPGEAGRPGLPGPVGLPG 662
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 38.1 bits (87), Expect = 0.037
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 587 PGLPGAA--PGQAVE-----LIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGG 638
PGLPG PG E LIGL+ G ++G + LP ++G+ G G G+ GP G
Sbjct: 1449 PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP 1508
Query: 639 AGGADGPGV 647
G PG+
Sbjct: 1509 LGPPGPPGL 1517
Score = 35.0 bits (79), Expect = 0.31
Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 20/72 (27%)
Query: 582 AGYRG----PGLPGA--APGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
AG RG GLPGA APG GG +G PV G+ GE G+AG GP
Sbjct: 1035 AGLRGFPGERGLPGAQGAPG----------LKGGEGPQGPPGPV--GSPGERGSAGTAGP 1082
Query: 636 VG--GAGGADGP 645
+G G G GP
Sbjct: 1083 IGLPGRPGPQGP 1094
Score = 34.7 bits (78), Expect = 0.40
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 582 AGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPV---G 637
AG GP GLPG Q G A ++G P +G QG AG GV+GPV G
Sbjct: 1077 AGTAGPIGLPGRPGPQG--------PPGPAGEKGA--PGEKGPQGPAGRDGVQGPVGLPG 1126
Query: 638 GAGGADGPG 646
AG A PG
Sbjct: 1127 PAGPAGSPG 1135
Score = 33.5 bits (75), Expect = 0.90
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
PG PGA + G AG GQ+ P RG++G G G GP G +GG P
Sbjct: 870 PGFPGANGEK-----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP 924
Query: 646 G 646
G
Sbjct: 925 G 925
Score = 32.3 bits (72), Expect = 2.0
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGV---RGPVG 637
Q G GP PG G G A EG+Q +G +GEAGA G GPVG
Sbjct: 1355 QPGPPGPSGEAGPPGPP----GKRGPPGAAGAEGRQ--GEKGAKGEAGAEGPPGKTGPVG 1408
Query: 638 GAGGADGPG 646
G A PG
Sbjct: 1409 PQGPAGKPG 1417
Score = 32.0 bits (71), Expect = 2.6
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G GP P +PG+ G G Q+G + +G G G G++GPVG G A
Sbjct: 1123 GLPGPAGPAGSPGED----GDKGEIGEPGQKGSK--GDKGENGPPGPPGLQGPVGAPGIA 1176
Query: 643 DGPG 646
G G
Sbjct: 1177 GGDG 1180
Score = 31.6 bits (70), Expect = 3.4
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVR---GPVG- 637
G RGP A G+ E G AG G+ PV +G G+ G G+R GPVG
Sbjct: 1372 GKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGE 1430
Query: 638 ----GAGGADGP 645
GA G DGP
Sbjct: 1431 QGLPGAAGQDGP 1442
Score = 31.2 bits (69), Expect = 4.5
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G RGP P PG G ++G+ P RG GEAG G+ GP G G
Sbjct: 628 GERGPQGPPGPPGDD----------GMRGEDGEIGP--RGLPGEAGPRGLLGPRGTPGAP 675
Query: 643 DGPGV 647
PG+
Sbjct: 676 GQPGM 680
Score = 31.2 bits (69), Expect = 4.5
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAGG 641
G RGP P A G G + + GG ++G+ G GEAG G +G G G
Sbjct: 1237 GPRGPQGPNGADGPQGPP-GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1295
Query: 642 ADGPG 646
A PG
Sbjct: 1296 AGPPG 1300
Score = 30.8 bits (68), Expect = 5.8
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 587 PGLPGA--APGQAVELIGLLRAAGGALQEG--------------QQLPVS-RGTQGEAGA 629
PGLPGA PG ++ L GG +G QQ ++ RG G G
Sbjct: 489 PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGL 548
Query: 630 AGVRGPVGGAGGADGPG 646
G GPVGG G + G
Sbjct: 549 TGRPGPVGGPGSSGAKG 565
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 38.1 bits (87), Expect = 0.037
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 587 PGLPGAA--PGQAVE-----LIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGG 638
PGLPG PG E LIGL+ G ++G + LP ++G+ G G G+ GP G
Sbjct: 1398 PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP 1457
Query: 639 AGGADGPGV 647
G PG+
Sbjct: 1458 LGPPGPPGL 1466
Score = 35.0 bits (79), Expect = 0.31
Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 20/72 (27%)
Query: 582 AGYRG----PGLPGA--APGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
AG RG GLPGA APG GG +G PV G+ GE G+AG GP
Sbjct: 984 AGLRGFPGERGLPGAQGAPG----------LKGGEGPQGPPGPV--GSPGERGSAGTAGP 1031
Query: 636 VG--GAGGADGP 645
+G G G GP
Sbjct: 1032 IGLPGRPGPQGP 1043
Score = 34.7 bits (78), Expect = 0.40
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 582 AGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPV---G 637
AG GP GLPG Q G A ++G P +G QG AG GV+GPV G
Sbjct: 1026 AGTAGPIGLPGRPGPQG--------PPGPAGEKGA--PGEKGPQGPAGRDGVQGPVGLPG 1075
Query: 638 GAGGADGPG 646
AG A PG
Sbjct: 1076 PAGPAGSPG 1084
Score = 33.5 bits (75), Expect = 0.90
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
PG PGA + G AG GQ+ P RG++G G G GP G +GG P
Sbjct: 819 PGFPGANGEK-----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP 873
Query: 646 G 646
G
Sbjct: 874 G 874
Score = 32.3 bits (72), Expect = 2.0
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGV---RGPVG 637
Q G GP PG G G A EG+Q +G +GEAGA G GPVG
Sbjct: 1304 QPGPPGPSGEAGPPGPP----GKRGPPGAAGAEGRQ--GEKGAKGEAGAEGPPGKTGPVG 1357
Query: 638 GAGGADGPG 646
G A PG
Sbjct: 1358 PQGPAGKPG 1366
Score = 32.0 bits (71), Expect = 2.6
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G GP P +PG+ G G Q+G + +G G G G++GPVG G A
Sbjct: 1072 GLPGPAGPAGSPGED----GDKGEIGEPGQKGSK--GDKGENGPPGPPGLQGPVGAPGIA 1125
Query: 643 DGPG 646
G G
Sbjct: 1126 GGDG 1129
Score = 31.6 bits (70), Expect = 3.4
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVR---GPVG- 637
G RGP A G+ E G AG G+ PV +G G+ G G+R GPVG
Sbjct: 1321 GKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGE 1379
Query: 638 ----GAGGADGP 645
GA G DGP
Sbjct: 1380 QGLPGAAGQDGP 1391
Score = 31.2 bits (69), Expect = 4.5
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G RGP P PG G ++G+ P RG GEAG G+ GP G G
Sbjct: 577 GERGPQGPPGPPGDD----------GMRGEDGEIGP--RGLPGEAGPRGLLGPRGTPGAP 624
Query: 643 DGPGV 647
PG+
Sbjct: 625 GQPGM 629
Score = 31.2 bits (69), Expect = 4.5
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAGG 641
G RGP P A G G + + GG ++G+ G GEAG G +G G G
Sbjct: 1186 GPRGPQGPNGADGPQGPP-GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1244
Query: 642 ADGPG 646
A PG
Sbjct: 1245 AGPPG 1249
Score = 30.8 bits (68), Expect = 5.8
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 587 PGLPGA--APGQAVELIGLLRAAGGALQEG--------------QQLPVS-RGTQGEAGA 629
PGLPGA PG ++ L GG +G QQ ++ RG G G
Sbjct: 438 PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGL 497
Query: 630 AGVRGPVGGAGGADGPG 646
G GPVGG G + G
Sbjct: 498 TGRPGPVGGPGSSGAKG 514
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 38.1 bits (87), Expect = 0.037
Identities = 26/69 (37%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 587 PGLPGAA--PGQAVE-----LIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGG 638
PGLPG PG E LIGL+ G ++G + LP ++G+ G G G+ GP G
Sbjct: 1437 PGLPGLKGDPGSKGEKGHPGLIGLIGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPGPAGP 1496
Query: 639 AGGADGPGV 647
G PG+
Sbjct: 1497 LGPPGPPGL 1505
Score = 35.0 bits (79), Expect = 0.31
Identities = 30/72 (41%), Positives = 34/72 (47%), Gaps = 20/72 (27%)
Query: 582 AGYRG----PGLPGA--APGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
AG RG GLPGA APG GG +G PV G+ GE G+AG GP
Sbjct: 1023 AGLRGFPGERGLPGAQGAPG----------LKGGEGPQGPPGPV--GSPGERGSAGTAGP 1070
Query: 636 VG--GAGGADGP 645
+G G G GP
Sbjct: 1071 IGLPGRPGPQGP 1082
Score = 34.7 bits (78), Expect = 0.40
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 14/69 (20%)
Query: 582 AGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPV---G 637
AG GP GLPG Q G A ++G P +G QG AG GV+GPV G
Sbjct: 1065 AGTAGPIGLPGRPGPQG--------PPGPAGEKGA--PGEKGPQGPAGRDGVQGPVGLPG 1114
Query: 638 GAGGADGPG 646
AG A PG
Sbjct: 1115 PAGPAGSPG 1123
Score = 33.5 bits (75), Expect = 0.90
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
PG PGA + G AG GQ+ P RG++G G G GP G +GG P
Sbjct: 858 PGFPGANGEK-----GARGVAGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGPP 912
Query: 646 G 646
G
Sbjct: 913 G 913
Score = 32.3 bits (72), Expect = 2.0
Identities = 27/69 (39%), Positives = 30/69 (43%), Gaps = 9/69 (13%)
Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGV---RGPVG 637
Q G GP PG G G A EG+Q +G +GEAGA G GPVG
Sbjct: 1343 QPGPPGPSGEAGPPGPP----GKRGPPGAAGAEGRQ--GEKGAKGEAGAEGPPGKTGPVG 1396
Query: 638 GAGGADGPG 646
G A PG
Sbjct: 1397 PQGPAGKPG 1405
Score = 32.0 bits (71), Expect = 2.6
Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G GP P +PG+ G G Q+G + +G G G G++GPVG G A
Sbjct: 1111 GLPGPAGPAGSPGED----GDKGEIGEPGQKGSK--GDKGENGPPGPPGLQGPVGAPGIA 1164
Query: 643 DGPG 646
G G
Sbjct: 1165 GGDG 1168
Score = 31.6 bits (70), Expect = 3.4
Identities = 28/72 (38%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVR---GPVG- 637
G RGP A G+ E G AG G+ PV +G G+ G G+R GPVG
Sbjct: 1360 GKRGPPGAAGAEGRQGEK-GAKGEAGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGE 1418
Query: 638 ----GAGGADGP 645
GA G DGP
Sbjct: 1419 QGLPGAAGQDGP 1430
Score = 31.2 bits (69), Expect = 4.5
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 12/65 (18%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G RGP P PG G ++G+ P RG GEAG G+ GP G G
Sbjct: 616 GERGPQGPPGPPGDD----------GMRGEDGEIGP--RGLPGEAGPRGLLGPRGTPGAP 663
Query: 643 DGPGV 647
PG+
Sbjct: 664 GQPGM 668
Score = 31.2 bits (69), Expect = 4.5
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPVGGAGG 641
G RGP P A G G + + GG ++G+ G GEAG G +G G G
Sbjct: 1225 GPRGPQGPNGADGPQGPP-GSVGSVGGVGEKGEPGEAGNPGPPGEAGVGGPKGERGEKGE 1283
Query: 642 ADGPG 646
A PG
Sbjct: 1284 AGPPG 1288
Score = 30.8 bits (68), Expect = 5.8
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 17/77 (22%)
Query: 587 PGLPGA--APGQAVELIGLLRAAGGALQEG--------------QQLPVS-RGTQGEAGA 629
PGLPGA PG ++ L GG +G QQ ++ RG G G
Sbjct: 477 PGLPGADGLPGPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGL 536
Query: 630 AGVRGPVGGAGGADGPG 646
G GPVGG G + G
Sbjct: 537 TGRPGPVGGPGSSGAKG 553
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 38.1 bits (87), Expect = 0.037
Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 14/69 (20%)
Query: 581 QAGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGA 639
+ G GP G PGA PGQ E GG + G + G +GE G GV GP GG+
Sbjct: 802 ETGPPGPAGFPGA-PGQNGE-------PGGKGERG-----APGEKGEGGPPGVAGPPGGS 848
Query: 640 GGADGPGVQ 648
G A PG Q
Sbjct: 849 GPAGPPGPQ 857
Score = 35.4 bits (80), Expect = 0.24
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 6/83 (7%)
Query: 565 GKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGT 623
GK E +G A L G RGP P A G GL AG + G + P RG
Sbjct: 394 GKGEMGPAGIPGAPGLM-GARGPPGPAGANGAP----GLRGGAGEPGKNGAKGEPGPRGE 448
Query: 624 QGEAGAAGVRGPVGGAGGADGPG 646
+GEAG GV G G G PG
Sbjct: 449 RGEAGIPGVPGAKGEDGKDGSPG 471
Score = 34.7 bits (78), Expect = 0.40
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVG---- 637
G GP P APG A G G Q P +G GE GAAG++G G
Sbjct: 1065 GESGPAGPAGAPGPA----------GSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGN 1114
Query: 638 -GAGGADGPGVQE 649
GA G+ GP Q+
Sbjct: 1115 PGAPGSPGPAGQQ 1127
Score = 32.3 bits (72), Expect = 2.0
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 13/74 (17%)
Query: 583 GYRG-PGLPGAAPGQAVELIGLLRAAGGALQEGQQ-------LPVSRGTQGEAGAAGVRG 634
G RG PGLPGAA + + A G Q G P S G +GE G AG G
Sbjct: 306 GERGRPGLPGAAGARGND-----GARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPG 360
Query: 635 PVGGAGGADGPGVQ 648
G G PG Q
Sbjct: 361 SNGAPGQRGEPGPQ 374
Score = 32.0 bits (71), Expect = 2.6
Identities = 73/263 (27%), Positives = 90/263 (34%), Gaps = 28/263 (10%)
Query: 398 PPSSGSP-PLGLESVPSEQSRVSEQSVVSEMQNRGL-GSLFSGSLLPTDPK--AALPGSS 453
P +G+P P+G P E+ R N G GS G P P A PGS
Sbjct: 290 PGENGAPGPMGPRGAPGERGRPGLPGAAGARGNDGARGS--DGQPGPPGPPGTAGFPGSP 347
Query: 454 GAALPSSSAGLRLPRASLPMGVRLLLLALRDCGPLCPTDSSSI-GLKSLRVSWEVSSMPW 512
GA AG P ++ G R G P I G + + +P
Sbjct: 348 GAKGEVGPAGS--PGSNGAPGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPG 405
Query: 513 EPWRLNWASPVTSSCSLIPRANGERG--GDCAEPRLTGSLYLFRRTLTPWRRALGKAEAW 570
P + P + ANG G G EP G+ P R + EA
Sbjct: 406 APGLMGARGPPGPA-----GANGAPGLRGGAGEPGKNGAKG------EPGPRG-ERGEAG 453
Query: 571 FSGWAAASWLQAGYRGPGLPGA--APGQAVE--LIGLLRAAGGALQEGQQLPVS-RGTQG 625
G A PG PGA PG A E G AG G++ P RG G
Sbjct: 454 IPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKGPAGERGAPG 513
Query: 626 EAGAAGVRGPVGGAGGADGPGVQ 648
AG G G G G GPG++
Sbjct: 514 PAGPRGAAGEPGRDGVPGGPGMR 536
Score = 32.0 bits (71), Expect = 2.6
Identities = 28/66 (42%), Positives = 29/66 (43%), Gaps = 13/66 (19%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVR------GPVGGAG 640
PG PG G A G A GG G P RG G AGA G+R GP GG G
Sbjct: 656 PGEPGPK-GDA----GAPGAPGGKGDAGA--PGERGPPGLAGAPGLRGGAGPPGPEGGKG 708
Query: 641 GADGPG 646
A PG
Sbjct: 709 AAGPPG 714
Score = 31.6 bits (70), Expect = 3.4
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGG 641
AGY GP P PG G G G Q P G G+AG +G GP GA G
Sbjct: 170 AGYPGPAGPPGPPGPP----GTSGHPGSPGSPGYQGPP--GEPGQAGPSGPPGP-PGAIG 222
Query: 642 ADGPGVQERE 651
GP ++ E
Sbjct: 223 PSGPAGKDGE 232
Score = 31.6 bits (70), Expect = 3.4
Identities = 26/61 (42%), Positives = 27/61 (44%), Gaps = 12/61 (19%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--GAGGADG 644
PG PGA PG G G A + G RG G AG AG GP G GA G G
Sbjct: 1040 PGAPGA-PGHP----GPPGPVGPAGKSGD-----RGESGPAGPAGAPGPAGSRGAPGPQG 1089
Query: 645 P 645
P
Sbjct: 1090 P 1090
Score = 30.4 bits (67), Expect = 7.6
Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Query: 583 GYRGP-GLPG-AAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
GY+GP G PG A P G + +G A ++G+ G G G G+ GP G G
Sbjct: 198 GYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES-----GRPGRPGERGLPGPPGIKG 252
Query: 641 GADGPG 646
A PG
Sbjct: 253 PAGIPG 258
Score = 30.4 bits (67), Expect = 7.6
Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 582 AGYRG----PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG 637
AG RG PG G G + G+ + GG +G+ P G+QGE+G G GP G
Sbjct: 515 AGPRGAAGEPGRDGVPGGPGMR--GMPGSPGGPGSDGK--PGPPGSQGESGRPGPPGPSG 570
Query: 638 GAGGADGPGV 647
G PGV
Sbjct: 571 PRG---QPGV 577
Score = 30.4 bits (67), Expect = 7.6
Identities = 30/73 (41%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 583 GYRG-PGLPGA--APGQAVE--LIGLLRAAGGALQEGQQLPVSR-GTQGEAGAAGVRGPV 636
G+RG PG PGA +PG A + IG AG G P + GT G G G GP
Sbjct: 1107 GHRGFPGNPGAPGSPGPAGQQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPR 1166
Query: 637 GGAG--GADG-PG 646
G G G++G PG
Sbjct: 1167 GNRGERGSEGSPG 1179
Score = 30.0 bits (66), Expect = 10.0
Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 12/64 (18%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G+RGP P PG+ G A + G P G +G AG G G GG G
Sbjct: 489 GFRGPAGPNGIPGEK----------GPAGERGAPGPA--GPRGAAGEPGRDGVPGGPGMR 536
Query: 643 DGPG 646
PG
Sbjct: 537 GMPG 540
Score = 30.0 bits (66), Expect = 10.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Query: 615 QQLPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
Q LP + G GE G G GP G AG PG
Sbjct: 641 QGLPGTGGPPGENGKPGEPGPKGDAGAPGAPG 672
Score = 30.0 bits (66), Expect = 10.0
Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G RGP P PG A + + GGA LP G +G G G GP G AG
Sbjct: 759 GPRGPTGPIGPPGPAGQPGD--KGEGGA----PGLPGIAGPRGSPGERGETGPPGPAGFP 812
Query: 643 DGPG 646
PG
Sbjct: 813 GAPG 816
>gi|239757699 PREDICTED: hypothetical protein [Homo sapiens]
Length = 270
Score = 37.4 bits (85), Expect = 0.062
Identities = 71/234 (30%), Positives = 86/234 (36%), Gaps = 54/234 (23%)
Query: 347 GLSLGRPPLQLGSLSTETG---AGASPGGLDVGL---EETWLSP---ISPTPEDMEPSPS 397
GLS G P L E G AG + G VGL E W SP P P+ P
Sbjct: 34 GLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQ----GPR 89
Query: 398 PPSSGSP--PLGL--------------ESVPSEQSRVSEQSVVSEMQNRG-LGSLFSGSL 440
PPSS SP P GL + P S VS + + + RG G G
Sbjct: 90 PPSS-SPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPG 148
Query: 441 LPTDPKAALPGSSGAALPSSSA---------GLRL-PRASLPMGVRLL--LLALRDCGPL 488
P P + LP L S + GLRL PR S G R LA
Sbjct: 149 NPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLRLR 208
Query: 489 CPTDSSSIGLKSL--RVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
C D +GL+ L R S +SS P S + S++ AN E G +
Sbjct: 209 CRLDLPGLGLRDLGARSSSVLSSSP---------SELVPELSVLLLANSEEGSE 253
>gi|239752184 PREDICTED: hypothetical protein XP_002348161 [Homo
sapiens]
Length = 270
Score = 37.4 bits (85), Expect = 0.062
Identities = 71/234 (30%), Positives = 86/234 (36%), Gaps = 54/234 (23%)
Query: 347 GLSLGRPPLQLGSLSTETG---AGASPGGLDVGL---EETWLSP---ISPTPEDMEPSPS 397
GLS G P L E G AG + G VGL E W SP P P+ P
Sbjct: 34 GLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQ----GPR 89
Query: 398 PPSSGSP--PLGL--------------ESVPSEQSRVSEQSVVSEMQNRG-LGSLFSGSL 440
PPSS SP P GL + P S VS + + + RG G G
Sbjct: 90 PPSS-SPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPG 148
Query: 441 LPTDPKAALPGSSGAALPSSSA---------GLRL-PRASLPMGVRLL--LLALRDCGPL 488
P P + LP L S + GLRL PR S G R LA
Sbjct: 149 NPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLRLR 208
Query: 489 CPTDSSSIGLKSL--RVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
C D +GL+ L R S +SS P S + S++ AN E G +
Sbjct: 209 CRLDLPGLGLRDLGARSSSVLSSSP---------SELVPELSVLLLANSEEGSE 253
>gi|239746707 PREDICTED: hypothetical protein XP_002343834 [Homo
sapiens]
Length = 270
Score = 37.4 bits (85), Expect = 0.062
Identities = 71/234 (30%), Positives = 86/234 (36%), Gaps = 54/234 (23%)
Query: 347 GLSLGRPPLQLGSLSTETG---AGASPGGLDVGL---EETWLSP---ISPTPEDMEPSPS 397
GLS G P L E G AG + G VGL E W SP P P+ P
Sbjct: 34 GLSFGGPQLSTPGQDREAGADTAGGAAGERQVGLQKIEAEWWSPWPICLPHPQ----GPR 89
Query: 398 PPSSGSP--PLGL--------------ESVPSEQSRVSEQSVVSEMQNRG-LGSLFSGSL 440
PPSS SP P GL + P S VS + + + RG G G
Sbjct: 90 PPSS-SPRWPWGLGDRLLGARASRSGPQEPPPPGSTVSRRKAGNRPRLRGTAGGKAQGPG 148
Query: 441 LPTDPKAALPGSSGAALPSSSA---------GLRL-PRASLPMGVRLL--LLALRDCGPL 488
P P + LP L S + GLRL PR S G R LA
Sbjct: 149 NPEGPSSLLPRLLPLLLLSGATRDRRRLWGEGLRLAPRRSRDEGRRASPGNLASPGLRLR 208
Query: 489 CPTDSSSIGLKSL--RVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGD 540
C D +GL+ L R S +SS P S + S++ AN E G +
Sbjct: 209 CRLDLPGLGLRDLGARSSSVLSSSP---------SELVPELSVLLLANSEEGSE 253
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 37.4 bits (85), Expect = 0.062
Identities = 31/67 (46%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 583 GYRGPGLPGAAPGQ--AVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--G 638
G PGLPGA PGQ A GL AG LP + G +GE+G GV GP G G
Sbjct: 209 GVGQPGLPGA-PGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPG 267
Query: 639 AGGADGP 645
A G GP
Sbjct: 268 AVGPKGP 274
Score = 31.6 bits (70), Expect = 3.4
Identities = 28/76 (36%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 583 GYRGPGLPGA----APGQAVELIGLLRAAGGALQEGQQLPVSRG----TQGEAGAAGVRG 634
GY PGLPG P L+G G + G+Q P G G AG G RG
Sbjct: 314 GYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRG 373
Query: 635 P---VGGAGGADGPGV 647
P G AG PGV
Sbjct: 374 PPGPKGEAGPGGPPGV 389
Score = 31.2 bits (69), Expect = 4.5
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 11/97 (11%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQGEAGAAGVRGPVGGAGGADGP 645
PG G G V AG Q+G LP G +G +G G++GP G G P
Sbjct: 429 PGFTGRPGGPGV--------AGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLP 480
Query: 646 GVQEREQALCTLLGQ-QLHIILTAAPAKCPQLPSCPG 681
G+ + E L G+ + TA P P +P PG
Sbjct: 481 GL-KGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPG 516
Score = 30.8 bits (68), Expect = 5.8
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 581 QAGYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQGEAG---------- 628
Q G GP GLPG A L GL A G + G +P RG G G
Sbjct: 221 QGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGV 280
Query: 629 ----AAGVRGPVGGAGGADGPGVQ 648
AAG+ GP G +G PG +
Sbjct: 281 GVPGAAGLPGPQGPSGAKGEPGTR 304
Score = 30.0 bits (66), Expect = 10.0
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
Query: 583 GYRG-PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--GA 639
G RG PG G V+ +G+ AAG LP +G G G G RGP G G
Sbjct: 261 GPRGEPGAVGPKGPPGVDGVGVPGAAG--------LPGPQGPSGAKGEPGTRGPPGLIGP 312
Query: 640 GGADGPGV 647
G PG+
Sbjct: 313 TGYGMPGL 320
Score = 30.0 bits (66), Expect = 10.0
Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 14/72 (19%)
Query: 581 QAGYRGP-GLPG----AAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
Q G RGP G+PG A P L GL G LP G +G AG G GP
Sbjct: 455 QPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPG--------LPGPPG-EGRAGEPGTAGP 505
Query: 636 VGGAGGADGPGV 647
G G PG+
Sbjct: 506 TGPPGVPGSPGI 517
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 37.4 bits (85), Expect = 0.062
Identities = 28/79 (35%), Positives = 34/79 (43%), Gaps = 12/79 (15%)
Query: 581 QAGYRGPGLPGAAPGQA-----------VELIGLLRAAGGALQEGQQ-LPVSRGTQGEAG 628
Q G GP P PG + LIGL+ G A ++G Q LP +G G G
Sbjct: 1377 QMGPPGPLGPSGLPGLKGDTGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKG 1436
Query: 629 AAGVRGPVGGAGGADGPGV 647
G GP+G G PGV
Sbjct: 1437 DPGPPGPIGSLGHPGPPGV 1455
Score = 33.5 bits (75), Expect = 0.90
Identities = 28/84 (33%), Positives = 37/84 (44%), Gaps = 18/84 (21%)
Query: 582 AGYRG----PGLPG--AAPGQAVEL-----IGLLRAAGGALQEGQQ-------LPVSRGT 623
AG +G PGLPG PG + +G + G + + GQ P SRG
Sbjct: 781 AGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKSGKTGQPGLEGERGPPGSRGE 840
Query: 624 QGEAGAAGVRGPVGGAGGADGPGV 647
+G+ GA G GP G G PG+
Sbjct: 841 RGQPGATGQPGPKGDVGQDGAPGI 864
Score = 32.3 bits (72), Expect = 2.0
Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
G RGP P PG+ L GL G + G P+ G +G AG G GP GG G
Sbjct: 932 GERGPPGPPGPPGEQ-GLPGLEGREGAKGELGPPGPL--GKEGPAGLRGFPGPKGGPGDP 988
Query: 643 DGPGVQ 648
G++
Sbjct: 989 GPTGLK 994
Score = 32.0 bits (71), Expect = 2.6
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 14/84 (16%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGAL--QEGQQLPVS----------RGTQGEAGAA 630
G +GP P A G E L A G L Q G + PV RG G G
Sbjct: 995 GDKGPPGPVGANGSPGERGPLGPAGGIGLPGQSGSEGPVGPAGKKGSRGERGPPGPTGKD 1054
Query: 631 GVRGPVG--GAGGADGPGVQEREQ 652
G+ GP+G G GA GP +E ++
Sbjct: 1055 GIPGPLGPLGPPGAAGPSGEEGDK 1078
Score = 32.0 bits (71), Expect = 2.6
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 14/76 (18%)
Query: 583 GYRGPGLPGAAPGQAVEL--IGLLRAAGGALQEGQQLPV-------SRGTQGEAGAAG-- 631
G RGP P G L +G AAG + +EG + V S+G +G+AG G
Sbjct: 1043 GERGPPGPTGKDGIPGPLGPLGPPGAAGPSGEEGDKGDVGAPGHKGSKGDKGDAGPPGQP 1102
Query: 632 -VRGPVG--GAGGADG 644
+RGP G G GADG
Sbjct: 1103 GIRGPAGHPGPPGADG 1118
Score = 30.4 bits (67), Expect = 7.6
Identities = 31/75 (41%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 583 GYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--GA 639
G++G G PG PGQ EL G G G P +G GE G G RGP G G
Sbjct: 887 GHQGKDGRPGH-PGQRGEL-GFQGQTGPPGPAGVLGP--QGKTGEVGPLGERGPPGPPGP 942
Query: 640 GGADG-PGVQEREQA 653
G G PG++ RE A
Sbjct: 943 PGEQGLPGLEGREGA 957
Score = 30.0 bits (66), Expect = 10.0
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 583 GYRG-PGLPGAAPGQAVELIGLLRAAGGALQEGQQ----LPVSRGTQGEAGAAGVRGPVG 637
G+ G PGLPG GQ + G + G ++G++ P G GE G G+ GP G
Sbjct: 551 GFDGLPGLPGEK-GQRGDF-GHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLLGPRG 608
Query: 638 GAGGADGPGV 647
G PGV
Sbjct: 609 SPGPTGRPGV 618
>gi|146219832 myosin light chain kinase 3 [Homo sapiens]
Length = 819
Score = 37.4 bits (85), Expect = 0.062
Identities = 51/172 (29%), Positives = 62/172 (36%), Gaps = 35/172 (20%)
Query: 315 PWLRRALPG-LEAPGDASFREPLFGATTSFLLVGLSLGRPP--LQLGSLSTETGAGASPG 371
P +A PG L P + P + L GL L P + + S S E GA G
Sbjct: 230 PGPAQAFPGHLPLPTKVEAKAP--ETPSENLRTGLELAPAPGRVNVVSPSLEVAPGAGQG 287
Query: 372 GLDVGLEETWLSPISPTPEDME------PSPSPPSSGSPPL---------GLESVPSEQS 416
S P PE +E P P P G P L G E+ P
Sbjct: 288 A----------SSSRPDPEPLEEGTRLTPGPGPQCPGPPGLPAQARATHSGGETPPRISI 337
Query: 417 RVSEQSVVSEMQNRGLGSLFSGSLLPTD-PKAALPGSSGAALPSSSAGLRLP 467
+ E EM G GSL G L T+ P AA PG G P + L+ P
Sbjct: 338 HIQEMDTPGEMLMTGRGSL--GPTLTTEAPAAAQPGKQGP--PGTGRCLQAP 385
>gi|154759255 collagen, type XXVIII precursor [Homo sapiens]
Length = 1125
Score = 37.4 bits (85), Expect = 0.062
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 583 GYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG-GAG 640
G +GP G+PG + G + G GQ LP S+G G+ G G RGPVG G
Sbjct: 441 GPQGPMGIPGIGSQGEQGIQGPIGPPGPQGPAGQGLPGSKGEVGQMGPTGPRGPVGIGVQ 500
Query: 641 GADG-PG 646
G G PG
Sbjct: 501 GPKGEPG 507
Score = 30.4 bits (67), Expect = 7.6
Identities = 25/65 (38%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 583 GYRGP-GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG- 640
G RGP G+ P IGL G ++G + G +GEAG G RGP G G
Sbjct: 490 GPRGPVGIGVQGPKGEPGSIGLPGQPGVPGEDG-----AAGKKGEAGLPGARGPEGPPGK 544
Query: 641 GADGP 645
G GP
Sbjct: 545 GQPGP 549
>gi|88702793 slit-like 2 [Homo sapiens]
Length = 673
Score = 37.4 bits (85), Expect = 0.062
Identities = 95/386 (24%), Positives = 138/386 (35%), Gaps = 55/386 (14%)
Query: 315 PWLRRALPGLEAPGDASFREPLFGATTSFLLVGLS-LGRPPLQL-GSLSTETGAGASPGG 372
PW+R + L +P + P A L + + G P ++ T P
Sbjct: 311 PWVRESHVTLASPEETRCHFPPKNAGRLLLELDYADFGCPATTTTATVPTTRPVVREPTA 370
Query: 373 LDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGL 432
L L TWLSP P E +PSPPS+ P +G P Q + S L
Sbjct: 371 LSSSLAPTWLSPTEPATE----APSPPSTAPPTVG----PVPQPQDCPPSTCLNGGTCHL 422
Query: 433 GSLFSGSLLPTDPKAALPGSS---GAALPSSSAGLRLPRASLPMGVRLLLLALRDCGPLC 489
G+ + L + L S PS + P SL +G+ + G
Sbjct: 423 GTRHHLACLCPEGFTGLYCESQMGQGTRPSPTPVTPRPPRSLTLGIEPVSPTSLRVGLQR 482
Query: 490 PTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSL-IPRANGERGGDCAEPRLTG 548
SS+ L+SLR+++ N + P +L +P + E P T
Sbjct: 483 YLQGSSVQLRSLRLTYR-----------NLSGPDKRLVTLRLPASLAEYTVTQLRPNATY 531
Query: 549 SLYLFRRTLTPWR-----RALGKAE---AWFSGWAAASWLQAGYRGPGLP-GAAPGQAVE 599
S+ + L P R A G+A A S A + + G LP AP A
Sbjct: 532 SVCVM--PLGPGRVPEGEEACGEAHTPPAVHSNHAPVTQAREG----NLPLLIAPALAAV 585
Query: 600 LIGLLRAAGGA--LQEGQQLPVSRGTQGEAGAA-------GVR-----GPVGGAGGADG- 644
L+ L A G A ++ G+ + + +G+ G GV+ GP GG +
Sbjct: 586 LLAALAAVGAAYCVRRGRAMAAAAQDKGQVGPGAGPLELEGVKVPLEPGPKATEGGGEAL 645
Query: 645 PGVQEREQALCTLLGQQLHIILTAAP 670
P E E L G L L A P
Sbjct: 646 PSGSECEVPLMGFPGPGLQSPLHAKP 671
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 37.0 bits (84), Expect = 0.081
Identities = 79/287 (27%), Positives = 99/287 (34%), Gaps = 53/287 (18%)
Query: 363 ETGAGASPGGLDVGLEETWLSPISPTPEDMEPSP--SPPSSGSPPLGLESVPSEQSRVSE 420
E GA PG P P E E P SP G P G P E + E
Sbjct: 615 EAGAQGPPG------------PAGPAGERGEQGPAGSPGFQGLP--GPAGPPGEAGKPGE 660
Query: 421 QSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLL 480
Q V ++ G + PG G P AG PR + G
Sbjct: 661 QGVPGDLGAPGPSGARG--------ERGFPGERGVQGPPGPAG---PRGA--NGAPGNDG 707
Query: 481 ALRDCG-PLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGG 539
A D G P P + GL+ + + +P A P + S P +G RG
Sbjct: 708 AKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGS--PGKDGVRG- 764
Query: 540 DCAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVE 599
LTG + P K E+ SG A + + G PG PG A
Sbjct: 765 ------LTGPI----GPPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGP-PGPA-- 811
Query: 600 LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
AG +GQ P ++G G+AGA G GP G AG A PG
Sbjct: 812 -----GFAGPPGADGQ--PGAKGEPGDAGAKGDAGPPGPAGPAGPPG 851
Score = 35.8 bits (81), Expect = 0.18
Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGG 641
AG GP P PG G + A G A +G + S G QG G G GP G AG
Sbjct: 331 AGPPGPTGPAGPPG----FPGAVGAKGEAGPQGPR--GSEGPQGVRGEPGPPGPAGAAGP 384
Query: 642 ADGPG 646
A PG
Sbjct: 385 AGNPG 389
Score = 35.0 bits (79), Expect = 0.31
Identities = 29/69 (42%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 582 AGYRG-PGLPG--AAPGQAVELIGLLRAAGGALQEGQQLPV-SRGTQGEAGAAGVRGPVG 637
AG +G PG PG APGQ +G G + G P +RG G GAAG GP G
Sbjct: 283 AGPKGEPGSPGENGAPGQ----MGPRGLPGERGRPGAPGPAGARGNDGATGAAGPPGPTG 338
Query: 638 GAGGADGPG 646
AG PG
Sbjct: 339 PAGPPGFPG 347
Score = 35.0 bits (79), Expect = 0.31
Identities = 42/154 (27%), Positives = 55/154 (35%), Gaps = 22/154 (14%)
Query: 322 PGLEAPGDASFREPLFGATTSFLLVGLSLGRPPLQLGSLST-----ETGAGASPGGLDVG 376
PGL P S RE GA S P + GS ETG PG
Sbjct: 1003 PGLAGPPGESGREGAPGAEGS-----------PGRDGSPGAKGDRGETGPAGPPGAPGAP 1051
Query: 377 LEETWLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGLGSL- 435
+ P + + E P+ P+ P+G Q ++ E +RG+
Sbjct: 1052 GAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKGHR 1111
Query: 436 -FSGSLLPTDPKAALPGSSGAALPSSSAGLRLPR 468
FSG P P PGS G PS ++G PR
Sbjct: 1112 GFSGLQGPPGP----PGSPGEQGPSGASGPAGPR 1141
Score = 34.7 bits (78), Expect = 0.40
Identities = 30/82 (36%), Positives = 31/82 (37%), Gaps = 12/82 (14%)
Query: 566 KAEAWFSGWAAASWLQAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQ-LPVSRGTQ 624
K FSG A G GP P PG E G Q G + LP RG
Sbjct: 265 KGHRGFSGLDGAK----GDAGPAGPKGEPGSPGE-------NGAPGQMGPRGLPGERGRP 313
Query: 625 GEAGAAGVRGPVGGAGGADGPG 646
G G AG RG G G A PG
Sbjct: 314 GAPGPAGARGNDGATGAAGPPG 335
Score = 34.7 bits (78), Expect = 0.40
Identities = 31/73 (42%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Query: 581 QAGYRG-PGLPGAA--PGQAVE--LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
QAG G PG GAA PG+A E + G A G A ++G+ G QG G AG G
Sbjct: 576 QAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEA-----GAQGPPGPAGPAGE 630
Query: 636 VGGAGGADGPGVQ 648
G G A PG Q
Sbjct: 631 RGEQGPAGSPGFQ 643
Score = 33.5 bits (75), Expect = 0.90
Identities = 26/71 (36%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPV-SRGTQGEAGAAGVRGPVGGAG 640
AG GP P PG IG + A G G P + G G AG G GP G AG
Sbjct: 838 AGPPGPAGPAGPPGP----IGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAG 893
Query: 641 GADGPGVQERE 651
PG +E
Sbjct: 894 PPGPPGPAGKE 904
Score = 33.1 bits (74), Expect = 1.2
Identities = 89/297 (29%), Positives = 103/297 (34%), Gaps = 54/297 (18%)
Query: 373 LDVGLEETWLSPISPTPEDMEPS-----PSPPSSGSP-PLGLESVPSEQSRVSEQSVVSE 426
L G +E IS P M PS P PP G+P P G + P E E
Sbjct: 163 LSYGYDEKSTGGIS-VPGPMGPSGPRGLPGPP--GAPGPQGFQGPPGEPG---EPGASGP 216
Query: 427 MQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLR-LP-RASLP-----MGVRLLL 479
M RG + D +A PG G P G R LP A LP G L
Sbjct: 217 MGPRGPPGPPGKN--GDDGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLD 274
Query: 480 LALRDCGPLCPT-DSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERG 538
A D GP P + S G +P E R P + R N
Sbjct: 275 GAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGA------RGNDGAT 328
Query: 539 GDCAEPRLTGSLYLFRRTLTPWRRALG-KAEAWFSGWAAASWLQAGYRG-PGLPGAAPGQ 596
G P TG + A+G K EA G + Q G RG PG PG A
Sbjct: 329 GAAGPPGPTGPA-----GPPGFPGAVGAKGEAGPQGPRGSEGPQ-GVRGEPGPPGPA--- 379
Query: 597 AVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAA------GVRGPVG--GAGGADGP 645
G AG +GQ P ++G G G A G RGP G G GG GP
Sbjct: 380 -----GAAGPAGNPGADGQ--PGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGP 429
Score = 32.3 bits (72), Expect = 2.0
Identities = 26/65 (40%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--GAG 640
G GP P APG G G A + G RG G AG AG GPVG G
Sbjct: 1037 GETGPAGPPGAPGAP----GAPGPVGPAGKSGD-----RGETGPAGPAGPVGPVGARGPA 1087
Query: 641 GADGP 645
G GP
Sbjct: 1088 GPQGP 1092
Score = 32.3 bits (72), Expect = 2.0
Identities = 26/70 (37%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 583 GYRGPGLPGAAPGQAVEL-----IGLLRAAG-GALQEGQQLPVSRGTQGEAGAAGVRGPV 636
G RGP P G E G+ G LQ P S G QG +GA+G GP
Sbjct: 1082 GARGPAGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPR 1141
Query: 637 GGAGGADGPG 646
G G A PG
Sbjct: 1142 GPPGSAGAPG 1151
Score = 31.6 bits (70), Expect = 3.4
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 587 PGLPGAAPGQAVE----LIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGA 642
PG PG+ + +G+ G A +EG+ RG +GE G G+ GP G GG
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGK-----RGARGEPGPTGLPGPPGERGGP 490
Query: 643 DGPG 646
G
Sbjct: 491 GSRG 494
Score = 30.8 bits (68), Expect = 5.8
Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 18/71 (25%)
Query: 581 QAGYRG-PGLPGAA--PGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG 637
Q G RG PGLPG + PG+ + GA E RG G G G+ GP G
Sbjct: 966 QRGERGFPGLPGPSGEPGK--------QGPSGASGE-------RGPPGPMGPPGLAGPPG 1010
Query: 638 GAGGADGPGVQ 648
+G PG +
Sbjct: 1011 ESGREGAPGAE 1021
Score = 30.4 bits (67), Expect = 7.6
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 14/72 (19%)
Query: 582 AGYRGP----GLPGAA--PGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGP 635
+G RGP G PG A PG++ G A G ++G S G +G+ G G GP
Sbjct: 991 SGERGPPGPMGPPGLAGPPGESGRE-GAPGAEGSPGRDG-----SPGAKGDRGETGPAGP 1044
Query: 636 VG--GAGGADGP 645
G GA GA GP
Sbjct: 1045 PGAPGAPGAPGP 1056
Score = 30.0 bits (66), Expect = 10.0
Identities = 23/61 (37%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG--GAGGADG 644
PG PG A + GG G+ P R GE G G GP G G+ GADG
Sbjct: 895 PGPPGPAGKE-----------GGKGPRGETGPAGR--PGEVGPPGPPGPAGEKGSPGADG 941
Query: 645 P 645
P
Sbjct: 942 P 942
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 37.0 bits (84), Expect = 0.081
Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 588 GLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGV 647
GLPGA G+ G A G A +G Q P RG QG G G+RGP G +G PG+
Sbjct: 728 GLPGAV-GEP----GAKGAMGPAGPDGHQGP--RGEQGLTGMPGIRGPPGPSGDPGKPGL 780
Score = 31.6 bits (70), Expect = 3.4
Identities = 26/80 (32%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 582 AGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAG 640
AG GP P PG +G ++G +G PV +G +GE G GV+G G
Sbjct: 649 AGEPGPHGPPGVPGS----VGPKGSSGSPGPQGPPGPVGLQGLRGEVGLPGVKGDKGPM- 703
Query: 641 GADGPGVQEREQALCTLLGQ 660
G GP + E+ L G+
Sbjct: 704 GPPGPKGDQGEKGPRGLTGE 723
>gi|29725624 collagen, type XXIII, alpha 1 [Homo sapiens]
Length = 540
Score = 37.0 bits (84), Expect = 0.081
Identities = 35/106 (33%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 583 GYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG----- 637
G +GP P PG EL GL A G ++G + +G GE G AG++G G
Sbjct: 324 GPQGPPGPPGIPGAKGEL-GLPGAPGIDGEKGPK--GQKGDPGEPGPAGLKGEAGEMGLS 380
Query: 638 GAGGADGPGVQEREQALCTLLGQQLHIILTAAPAKCPQLPSCPGAL 683
G GADG ++ E A +L +I+ P P P PG +
Sbjct: 381 GLPGADGLKGEKGESASDSLQESLAQLIVEPGP---PGPPGPPGPM 423
Score = 30.0 bits (66), Expect = 10.0
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 621 RGTQGEAGAAGVRGPVGGAGGADGPG 646
RG QG+ GAAG GP G G PG
Sbjct: 174 RGDQGQDGAAGPPGPPGPPGARGPPG 199
>gi|157502197 hypothetical protein LOC9772 [Homo sapiens]
Length = 1356
Score = 37.0 bits (84), Expect = 0.081
Identities = 37/114 (32%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 375 VGLEETWLSPISPTPE-DMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGLG 433
+GLE W IS TP DM S PPSS S L ++ SR + ++ M+ G
Sbjct: 869 MGLETGWNCHISLTPNGDMPGSEIPPSSPSHAGSLHDDLNQVSRDDAEGLLL-MEEEGHS 927
Query: 434 SLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLLALRDCGP 487
L S +D + L S+ A LP +R P V LL+ DC P
Sbjct: 928 DLISFQPTDSDIPSFLEDSNRAKLPRGIHQVR-PHLQNIDNVPLLVPLFTDCTP 980
>gi|122937269 Wilms tumor 1 interacting protein [Homo sapiens]
Length = 430
Score = 37.0 bits (84), Expect = 0.081
Identities = 36/125 (28%), Positives = 48/125 (38%), Gaps = 22/125 (17%)
Query: 351 GRPPLQL-GSLSTETGAGASPGGLDVGLEETWLSPISPTPEDMEPSPSPPSSGSPPLGLE 409
G P L GS G A G+ +G ++ SP S D P P PPS G
Sbjct: 87 GSPRASLAGSDGGGGGGSARSSGISLGYDQRHGSPRSGR-SDPRPGPGPPSVG------- 138
Query: 410 SVPSEQSRVSEQSVVSEMQNRGLGSLFSGSLLPTDPKAALPGSSGAALPSSSAGLRLPRA 469
S +S VS + +RG ++ L P A P + + P+ A LP
Sbjct: 139 ---------SARSSVSSLGSRGSAGAYADFL----PPGACPAPARSPEPAGPAPFPLPAL 185
Query: 470 SLPMG 474
LP G
Sbjct: 186 PLPPG 190
>gi|238859655 tetratricopeptide repeat domain 31 [Homo sapiens]
Length = 519
Score = 36.6 bits (83), Expect = 0.11
Identities = 59/232 (25%), Positives = 85/232 (36%), Gaps = 12/232 (5%)
Query: 322 PGLEAPGDASFREPLFGATTSFLLVGL-SLGRPPLQLGSLSTETGAGASPGGLDVGLEET 380
PG G E +++F+ + L +G PL S E G P G + L++
Sbjct: 216 PGNPVQGQCGEEEDSLDLSSTFVSLALRKVGDWPL---SARREKGLNQEPQGRGLALQKM 272
Query: 381 WLSPISPTPEDMEPSPSPPSSGSPPLGLESVPSEQSRVSEQSVVSEMQNRGLGSLFSGSL 440
SP P + P SP SP GL + +QS+ + S QN G +
Sbjct: 273 GQEEESP-PREERPQQSPKVQASP--GLLAAALQQSQELAKLGTSFAQN---GFYHEAVV 326
Query: 441 LPTDPKAALPGSSGAALPSSSAGLRLPRASLPMGVRLLLLALRDCGP--LCPTDSSSIGL 498
L T P S RL + + + + L LR P L + +GL
Sbjct: 327 LFTQALKLNPQDHRLFGNRSFCHERLGQPAWALADAQVALTLRPGWPRGLFRLGKALMGL 386
Query: 499 KSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGDCAEPRLTGSL 550
+ R + V A+ SC L G+RGG CA P G+L
Sbjct: 387 QRFREAAAVFQETLRGGSQPDAARELRSCLLHLTLQGQRGGICAPPLSPGAL 438
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 36.6 bits (83), Expect = 0.11
Identities = 53/185 (28%), Positives = 71/185 (38%), Gaps = 43/185 (23%)
Query: 419 SEQSVVSEMQNRGLGS-LFSGSLLPTDPKAALPGSSGAALPSSS--AGLRLPRASLPMGV 475
S S S N G S SG+ +P+D A P +SGA+ PS+S A AS+P
Sbjct: 23 SSASGASTPSNSGWASPSASGASIPSDSGWASPSASGASTPSNSGWASFSASWASIP--- 79
Query: 476 RLLLLALRDCGPLCPTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANG 535
S G S SW + P WASP S S IP +G
Sbjct: 80 ------------------SDSGWASPSASWAST-----PSDSGWASPSASGAS-IPSDSG 115
Query: 536 ERGGDCAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWA--AASWL----QAGYRGPGL 589
A P ++G+ +P A G + SGWA +ASW +G+ P
Sbjct: 116 -----WASPSVSGASIPSAFWASP--SASGASTPSDSGWASPSASWASTSSDSGWASPSA 168
Query: 590 PGAAP 594
+P
Sbjct: 169 SWTSP 173
Score = 30.8 bits (68), Expect = 5.8
Identities = 64/263 (24%), Positives = 103/263 (39%), Gaps = 24/263 (9%)
Query: 437 SGSLLPTDPKAALPGSSGAALPSSSA---GLRLPRASLPMGVRLL---LLALRDCGPLC- 489
SG+ P+D A P +SGA++PS+ + G P+ + G ++ L C LC
Sbjct: 387 SGASTPSDSGWASPSASGASMPSAPSLCPGSCFPQLTARTGFTVVGFPFSLLSHCISLCL 446
Query: 490 PTDSSSIGLKSLRVSWEVSSMPWEPWRLNWASPVTSSCSLIPRANGERGGDCAEPRLTGS 549
P + ++SL ++ + P P SS P A G R G +
Sbjct: 447 PEFGIFVSVESLAPLAILTLVHSRPLAQPRPQPSLSSLD-SPSARGVRVGLARDHLCCLP 505
Query: 550 LYLFRRTLTPWRRALGKAEAWFSGWAAASWL-QAGYRGPGLP--GAAPGQAVELIGLLRA 606
+ +F + P + L + + F G + G+R LP G A + + L L +
Sbjct: 506 ISVF--SPLPLQNLL-QVKGLFDGTSGCPHCGLGGHRAHFLPHAGLAGTELLPLRLLAQL 562
Query: 607 AGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPGVQEREQALCTLLGQQLHIIL 666
A EG + QGE +GP+ +G V + + + LLG Q +
Sbjct: 563 APQGCAEGWLV-----LQGEGEGPQAQGPL-----REGREVSQAPETVSALLGLQEQLPG 612
Query: 667 TAAPAKCPQLPSCPGALLLLLLL 689
P + P+ P LL L L
Sbjct: 613 EGLPWRLQHHPTRPALELLELSL 635
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 36.2 bits (82), Expect = 0.14
Identities = 43/122 (35%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 533 ANGERGGDCAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGA 592
A G+RG D EP GS P LGK +G + Q G G PGA
Sbjct: 1203 AKGDRGED-GEPGQPGSPGPTGENGPPG--PLGKRGP--AGSPGSEGRQGGKGAKGDPGA 1257
Query: 593 --APGQAVELIGLLRAAGGALQEGQQ----LPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
APG+ G + AG A + G LP S G QG GA G GP G G PG
Sbjct: 1258 IGAPGKT----GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG 1313
Query: 647 VQ 648
++
Sbjct: 1314 LR 1315
Score = 35.0 bits (79), Expect = 0.31
Identities = 46/151 (30%), Positives = 63/151 (41%), Gaps = 48/151 (31%)
Query: 581 QAGYRGP----GLPG-----AAPGQAVE--LIGLLRAAGGALQEGQQ-LPVSRGT---QG 625
QAG GP GLPG A G+ LIGL+ G ++G + LP +G+ +G
Sbjct: 1299 QAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG 1358
Query: 626 EAGAAGVRGPVG--------------GAGGADGPGVQEREQALCTLLGQQLHIILTAAPA 671
E G G GP+G GA GA GPG + E+ + P
Sbjct: 1359 EMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------------QGP- 1404
Query: 672 KCPQLPSCPGALLLLLLLQPLQLPQLLRLPV 702
P P PG ++ L P+Q+P+ R V
Sbjct: 1405 --PGHPGPPGEVIQPL---PIQMPKKTRRSV 1430
Score = 34.7 bits (78), Expect = 0.40
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
+ G G G P PG+ G G A ++G +P +G G G GV+GPVG G
Sbjct: 933 ERGAAGSGGPIGPPGRP----GPQGPPGAAGEKG--VPGEKGPIGPTGRDGVQGPVGLPG 986
Query: 641 GADGPGV 647
A PGV
Sbjct: 987 PAGPPGV 993
Score = 32.7 bits (73), Expect = 1.5
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 18/73 (24%)
Query: 587 PGLPG--------AAPGQAVELIGLLRAAGGALQEGQQLPVS----RGTQGEAGAAGVRG 634
PG PG PG+ GL AGG +G + P G+ GE GAAG G
Sbjct: 886 PGAPGKDGPAGLRGFPGER----GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGG 941
Query: 635 PVG--GAGGADGP 645
P+G G G GP
Sbjct: 942 PIGPPGRPGPQGP 954
Score = 31.6 bits (70), Expect = 3.4
Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 21/78 (26%)
Query: 583 GYRGP-GLPGAA--PGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG-- 637
G +GP GLPG A PG A E G + G P +GT+G G G GP G
Sbjct: 977 GVQGPVGLPGPAGPPGVAGE-------DGDKGEVGD--PGQKGTKGNKGEHGPPGPPGPI 1027
Query: 638 ------GAGGADG-PGVQ 648
GA GADG PG +
Sbjct: 1028 GPVGQPGAAGADGEPGAR 1045
Score = 31.2 bits (69), Expect = 4.5
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
PG PGA+ + GL +G + G P RG +G G +G +G GG G P
Sbjct: 730 PGFPGASGEKGAR--GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 787
Query: 646 G 646
G
Sbjct: 788 G 788
Score = 30.0 bits (66), Expect = 10.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 618 PVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
P RG G GA G +GP GG G PG
Sbjct: 1096 PGPRGPAGPNGADGPQGPPGGVGNLGPPG 1124
Score = 30.0 bits (66), Expect = 10.0
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
PG PG PG+ G A G ++G+ P G+ G G G GP+G G A PG
Sbjct: 1186 PGDPGP-PGEGGPR-GQDGAKGDRGEDGE--PGQPGSPGPTGENGPPGPLGKRGPAGSPG 1241
Query: 647 VQERE 651
+ R+
Sbjct: 1242 SEGRQ 1246
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 36.2 bits (82), Expect = 0.14
Identities = 43/122 (35%), Positives = 51/122 (41%), Gaps = 15/122 (12%)
Query: 533 ANGERGGDCAEPRLTGSLYLFRRTLTPWRRALGKAEAWFSGWAAASWLQAGYRGPGLPGA 592
A G+RG D EP GS P LGK +G + Q G G PGA
Sbjct: 1182 AKGDRGED-GEPGQPGSPGPTGENGPPG--PLGKRGP--AGSPGSEGRQGGKGAKGDPGA 1236
Query: 593 --APGQAVELIGLLRAAGGALQEGQQ----LPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
APG+ G + AG A + G LP S G QG GA G GP G G PG
Sbjct: 1237 IGAPGKT----GPVGPAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPG 1292
Query: 647 VQ 648
++
Sbjct: 1293 LR 1294
Score = 35.0 bits (79), Expect = 0.31
Identities = 46/151 (30%), Positives = 63/151 (41%), Gaps = 48/151 (31%)
Query: 581 QAGYRGP----GLPG-----AAPGQAVE--LIGLLRAAGGALQEGQQ-LPVSRGT---QG 625
QAG GP GLPG A G+ LIGL+ G ++G + LP +G+ +G
Sbjct: 1278 QAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKG 1337
Query: 626 EAGAAGVRGPVG--------------GAGGADGPGVQEREQALCTLLGQQLHIILTAAPA 671
E G G GP+G GA GA GPG + E+ + P
Sbjct: 1338 EMGIPGASGPIGPGGPPGLPGPAGPKGAKGATGPGGPKGEKGV-------------QGP- 1383
Query: 672 KCPQLPSCPGALLLLLLLQPLQLPQLLRLPV 702
P P PG ++ L P+Q+P+ R V
Sbjct: 1384 --PGHPGPPGEVIQPL---PIQMPKKTRRSV 1409
Score = 34.7 bits (78), Expect = 0.40
Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 581 QAGYRGPGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAG 640
+ G G G P PG+ G G A ++G +P +G G G GV+GPVG G
Sbjct: 912 ERGAAGSGGPIGPPGRP----GPQGPPGAAGEKG--VPGEKGPIGPTGRDGVQGPVGLPG 965
Query: 641 GADGPGV 647
A PGV
Sbjct: 966 PAGPPGV 972
Score = 32.7 bits (73), Expect = 1.5
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 18/73 (24%)
Query: 587 PGLPG--------AAPGQAVELIGLLRAAGGALQEGQQLPVS----RGTQGEAGAAGVRG 634
PG PG PG+ GL AGG +G + P G+ GE GAAG G
Sbjct: 865 PGAPGKDGPAGLRGFPGER----GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGG 920
Query: 635 PVG--GAGGADGP 645
P+G G G GP
Sbjct: 921 PIGPPGRPGPQGP 933
Score = 31.6 bits (70), Expect = 3.4
Identities = 31/78 (39%), Positives = 36/78 (46%), Gaps = 21/78 (26%)
Query: 583 GYRGP-GLPGAA--PGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVG-- 637
G +GP GLPG A PG A E G + G P +GT+G G G GP G
Sbjct: 956 GVQGPVGLPGPAGPPGVAGE-------DGDKGEVGD--PGQKGTKGNKGEHGPPGPPGPI 1006
Query: 638 ------GAGGADG-PGVQ 648
GA GADG PG +
Sbjct: 1007 GPVGQPGAAGADGEPGAR 1024
Score = 31.2 bits (69), Expect = 4.5
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVS-RGTQGEAGAAGVRGPVGGAGGADGP 645
PG PGA+ + GL +G + G P RG +G G +G +G GG G P
Sbjct: 709 PGFPGASGEKGAR--GLSGKSGPRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPP 766
Query: 646 G 646
G
Sbjct: 767 G 767
Score = 30.0 bits (66), Expect = 10.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 618 PVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
P RG G GA G +GP GG G PG
Sbjct: 1075 PGPRGPAGPNGADGPQGPPGGVGNLGPPG 1103
Score = 30.0 bits (66), Expect = 10.0
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 587 PGLPGAAPGQAVELIGLLRAAGGALQEGQQLPVSRGTQGEAGAAGVRGPVGGAGGADGPG 646
PG PG PG+ G A G ++G+ P G+ G G G GP+G G A PG
Sbjct: 1165 PGDPGP-PGEGGPR-GQDGAKGDRGEDGE--PGQPGSPGPTGENGPPGPLGKRGPAGSPG 1220
Query: 647 VQERE 651
+ R+
Sbjct: 1221 SEGRQ 1225
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,304,770
Number of Sequences: 37866
Number of extensions: 2123894
Number of successful extensions: 14662
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 317
Number of HSP's that attempted gapping in prelim test: 10921
Number of HSP's gapped (non-prelim): 3516
length of query: 889
length of database: 18,247,518
effective HSP length: 111
effective length of query: 778
effective length of database: 14,044,392
effective search space: 10926536976
effective search space used: 10926536976
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.