Guide to the Human Genome
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Name: LOC100294083 Sequence: fasta or formatted (120aa) NCBI GI: 239508766
Description:

PREDICTED: hypothetical protein, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.5          3           1
 C cysteine            8.3         10           1
 D aspartate           3.3          4           1
 E glutamate           0.8          1           1
 F phenylalanine       0.8          1           1
 G glycine             0.0          0           0
 H histidine           8.3         10           1
 I isoleucine         10.0         12           1
 K lysine              0.0          0           0
 L leucine             5.0          6           1
 M methionine          2.5          3           1
 N asparagine          5.0          6           1
 P proline             3.3          4           2
 Q glutamine           2.5          3           1
 R arginine            1.7          2           1
 S serine              5.0          6           1
 T threonine          12.5         15           1
 V valine             10.0         12           1
 W tryptophan          0.8          1           1
 Y tyrosine           17.5         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein, partial 
LOC100289774          0.496   PREDICTED: hypothetical protein XP_002346899, parti...
LOC100289675          0.496   PREDICTED: hypothetical protein XP_002342756, parti...
LOC100132983          0.315   PREDICTED: hypothetical protein 
LOC100291751          0.310   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134730          0.310   PREDICTED: hypothetical protein 
LOC100131488          0.302   PREDICTED: hypothetical protein 
LOC100131203          0.302   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.302   PREDICTED: similar to serine/threonine-protein kina...
LOC100287219          0.302   PREDICTED: hypothetical protein XP_002342512, parti...
LOC100289649          0.302   PREDICTED: hypothetical protein XP_002342367 
LOC100293402          0.298   PREDICTED: hypothetical protein 
LOC100131203          0.298   PREDICTED: hypothetical protein 
LOC100288317          0.298   PREDICTED: hypothetical protein XP_002342505 
LOC100133975          0.298   PREDICTED: hypothetical protein, partial 
LOC100133553          0.298   PREDICTED: hypothetical protein, partial 
LOC100134279          0.294   PREDICTED: hypothetical protein, partial 
LOC100133776          0.294   PREDICTED: similar to hCG1820441 
LOC100288070          0.294   PREDICTED: hypothetical protein XP_002342194 
LOC100134332          0.290   PREDICTED: hypothetical protein, partial 
LOC100129825          0.290   PREDICTED: hypothetical protein 
LOC100132107          0.290   PREDICTED: hypothetical protein 
LOC100134139          0.286   PREDICTED: hypothetical protein 
LOC100134060          0.286   PREDICTED: hypothetical protein 
LOC100132316          0.286   PREDICTED: hypothetical protein 
LOC100128267          0.286   PREDICTED: hypothetical protein, partial 
LOC100133226          0.282   PREDICTED: hypothetical protein 
LOC100132782          0.282   PREDICTED: hypothetical protein 
LOC100134325          0.282   PREDICTED: hypothetical protein 
LOC100134411          0.282   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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