Guide to the Human Genome
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Name: LOC100289774 Sequence: fasta or formatted (108aa) NCBI GI: 239749085
Description:

PREDICTED: hypothetical protein XP_002346899, partial

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8          3           1
 C cysteine            7.4          8           1
 D aspartate           3.7          4           1
 E glutamate           0.9          1           1
 F phenylalanine       1.9          2           1
 G glycine             0.0          0           0
 H histidine           3.7          4           1
 I isoleucine         12.0         13           1
 K lysine              0.0          0           0
 L leucine             4.6          5           1
 M methionine          2.8          3           1
 N asparagine          3.7          4           1
 P proline             2.8          3           2
 Q glutamine           2.8          3           1
 R arginine            1.9          2           1
 S serine              5.6          6           1
 T threonine           8.3          9           1
 V valine             12.0         13           1
 W tryptophan          0.0          0           0
 Y tyrosine           23.1         25           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346899, parti... 
LOC100289675          1.000   PREDICTED: hypothetical protein XP_002342756, parti...
LOC100294083          0.575   PREDICTED: hypothetical protein, partial 
LOC100132016          0.388   PREDICTED: hypothetical protein 
LOC100133807          0.360   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.355   PREDICTED: hypothetical protein 
LOC100134576          0.350   PREDICTED: hypothetical protein 
LOC100128267          0.350   PREDICTED: hypothetical protein, partial 
LOC100131203          0.350   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.350   PREDICTED: similar to serine/threonine-protein kina...
LOC100134279          0.350   PREDICTED: hypothetical protein, partial 
LOC100129642          0.350   PREDICTED: hypothetical protein 
LOC100132679          0.350   PREDICTED: hypothetical protein 
LOC100134411          0.346   PREDICTED: hypothetical protein 
LOC100133173          0.346   PREDICTED: hypothetical protein 
LOC100293574          0.341   PREDICTED: hypothetical protein, partial 
LOC100132016          0.341   PREDICTED: hypothetical protein 
LOC100134447          0.341   PREDICTED: hypothetical protein 
LOC100133741          0.341   PREDICTED: hypothetical protein 
LOC100133226          0.341   PREDICTED: hypothetical protein 
LOC100132983          0.341   PREDICTED: hypothetical protein 
LOC100134730          0.336   PREDICTED: hypothetical protein 
LOC100134060          0.336   PREDICTED: hypothetical protein 
LOC100132782          0.336   PREDICTED: hypothetical protein 
LOC100134139          0.332   PREDICTED: hypothetical protein 
LOC100129825          0.332   PREDICTED: hypothetical protein 
LOC100290334          0.327   PREDICTED: hypothetical protein XP_002346856, parti...
LOC100134325          0.313   PREDICTED: hypothetical protein 
LOC100129802          0.313   PREDICTED: hypothetical protein, partial 
LOC100289649          0.313   PREDICTED: hypothetical protein XP_002342367 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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