Guide to the Human Genome
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Name: LOC100288070 Sequence: fasta or formatted (135aa) NCBI GI: 239741397
Description:

PREDICTED: hypothetical protein XP_002342194

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          5           2
 C cysteine            7.4         10           1
 D aspartate           2.2          3           1
 E glutamate           3.7          5           1
 F phenylalanine       0.7          1           1
 G glycine             3.0          4           1
 H histidine           8.1         11           1
 I isoleucine         13.3         18           1
 K lysine              0.7          1           1
 L leucine             3.0          4           1
 M methionine          4.4          6           1
 N asparagine          1.5          2           1
 P proline             3.7          5           1
 Q glutamine           3.0          4           1
 R arginine            1.5          2           1
 S serine              3.7          5           1
 T threonine           7.4         10           1
 V valine             11.9         16           2
 W tryptophan          0.7          1           1
 Y tyrosine           16.3         22           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342194 
LOC100132983          0.312   PREDICTED: hypothetical protein 
LOC100291751          0.301   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100134411          0.297   PREDICTED: hypothetical protein 
LOC100129825          0.293   PREDICTED: hypothetical protein 
LOC100131203          0.290   PREDICTED: hypothetical protein 
LOC100132107          0.290   PREDICTED: hypothetical protein 
LOC100287219          0.290   PREDICTED: hypothetical protein XP_002342512, parti...
LOC100131203          0.286   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.286   PREDICTED: similar to serine/threonine-protein kina...
LOC100129642          0.286   PREDICTED: hypothetical protein 
LOC100132016          0.283   PREDICTED: hypothetical protein 
LOC100132782          0.283   PREDICTED: hypothetical protein 
LOC100134332          0.279   PREDICTED: hypothetical protein, partial 
LOC100128473          0.279   PREDICTED: hypothetical protein 
LOC100134730          0.279   PREDICTED: hypothetical protein 
LOC100129825          0.275   PREDICTED: hypothetical protein 
LOC100131488          0.275   PREDICTED: hypothetical protein 
LOC100289649          0.275   PREDICTED: hypothetical protein XP_002342367 
LOC100293574          0.275   PREDICTED: hypothetical protein, partial 
LOC100134279          0.275   PREDICTED: hypothetical protein, partial 
LOC100133741          0.275   PREDICTED: hypothetical protein 
LOC100288317          0.272   PREDICTED: hypothetical protein XP_002342505 
LOC100134060          0.268   PREDICTED: hypothetical protein 
LOC100294441          0.268   PREDICTED: hypothetical protein 
LOC100128267          0.268   PREDICTED: hypothetical protein, partial 
LOC100133975          0.268   PREDICTED: hypothetical protein, partial 
LOC100133807          0.268   PREDICTED: similar to serine/threonine-protein kina...
LOC100133450          0.268   PREDICTED: hypothetical protein, partial 
LOC100287975          0.268   PREDICTED: hypothetical protein XP_002342501, parti...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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