Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132316 Sequence: fasta or formatted (89aa) NCBI GI: 239747519
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             0.0          0           0
 C cysteine            6.7          6           1
 D aspartate           0.0          0           0
 E glutamate           1.1          1           1
 F phenylalanine       1.1          1           1
 G glycine             0.0          0           0
 H histidine          12.4         11           1
 I isoleucine         10.1          9           1
 K lysine              3.4          3           1
 L leucine             0.0          0           0
 M methionine          9.0          8           1
 N asparagine          2.2          2           1
 P proline             1.1          1           1
 Q glutamine           0.0          0           0
 R arginine            3.4          3           1
 S serine              1.1          1           1
 T threonine          13.5         12           1
 V valine             11.2         10           1
 W tryptophan          0.0          0           0
 Y tyrosine           23.6         21           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100131203          0.421   PREDICTED: hypothetical protein 
LOC100132782          0.421   PREDICTED: hypothetical protein 
LOC100287219          0.415   PREDICTED: hypothetical protein XP_002342512, parti...
LOC100288317          0.415   PREDICTED: hypothetical protein XP_002342505 
LOC100132983          0.415   PREDICTED: hypothetical protein 
LOC100291872          0.404   PREDICTED: hypothetical protein XP_002345798 
LOC100294441          0.404   PREDICTED: hypothetical protein 
LOC100133776          0.404   PREDICTED: similar to hCG1820441 
LOC100288070          0.393   PREDICTED: hypothetical protein XP_002342194 
LOC100134411          0.393   PREDICTED: hypothetical protein 
LOC100133515          0.393   PREDICTED: hypothetical protein 
LOC100291751          0.388   PREDICTED: hypothetical protein XP_002345809, parti...
LOC100132016          0.388   PREDICTED: hypothetical protein 
LOC100294083          0.388   PREDICTED: hypothetical protein, partial 
LOC100290334          0.388   PREDICTED: hypothetical protein XP_002346856, parti...
LOC100133450          0.388   PREDICTED: hypothetical protein, partial 
LOC100287975          0.388   PREDICTED: hypothetical protein XP_002342501, parti...
LOC100129642          0.383   PREDICTED: hypothetical protein 
LOC100133975          0.383   PREDICTED: hypothetical protein, partial 
LOC100132016          0.377   PREDICTED: hypothetical protein 
LOC100129802          0.377   PREDICTED: hypothetical protein, partial 
LOC100134447          0.372   PREDICTED: hypothetical protein 
LOC100134325          0.372   PREDICTED: hypothetical protein 
LOC100134060          0.372   PREDICTED: hypothetical protein 
LOC100134332          0.372   PREDICTED: hypothetical protein, partial 
LOC100133741          0.372   PREDICTED: hypothetical protein 
LOC100131488          0.366   PREDICTED: hypothetical protein 
LOC100291272          0.366   PREDICTED: hypothetical protein XP_002348172 
LOC100287989          0.366   PREDICTED: hypothetical protein XP_002343908 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press