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Search of human proteins with 23308689
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23308689 RNA pseudouridylate synthase domain containing 2
[Homo sapiens]
(545 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23308689 RNA pseudouridylate synthase domain containing 2 [Ho... 1127 0.0
gi|221316667 RNA pseudouridylate synthase domain containing 4 is... 80 5e-15
gi|221316663 RNA pseudouridylate synthase domain containing 4 is... 76 9e-14
gi|17158025 RNA pseudouridylate synthase domain containing 1 [Ho... 60 5e-09
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 40 0.004
gi|55741677 SET domain containing 1A [Homo sapiens] 40 0.007
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 37 0.035
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 37 0.035
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 37 0.035
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 37 0.046
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 37 0.046
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 37 0.046
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 37 0.061
gi|23503317 coiled-coil domain containing 96 [Homo sapiens] 36 0.079
gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Ho... 36 0.10
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 35 0.13
gi|32483399 p21-activated kinase 2 [Homo sapiens] 35 0.13
gi|153792633 hypothetical protein LOC26049 [Homo sapiens] 35 0.13
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 35 0.18
gi|91823274 autotaxin isoform 1 preproprotein [Homo sapiens] 35 0.18
gi|182765466 FCH and double SH3 domains 2 [Homo sapiens] 35 0.18
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 35 0.18
gi|48762934 alpha 2 type I collagen [Homo sapiens] 35 0.23
gi|55749932 desmin [Homo sapiens] 35 0.23
gi|239745414 PREDICTED: NPIP-like protein 2 isoform 2 [Homo sapi... 34 0.30
gi|44662836 breast cancer anti-estrogen resistance 1 [Homo sapiens] 34 0.30
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho... 34 0.30
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 34 0.39
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 34 0.39
gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isofor... 34 0.39
>gi|23308689 RNA pseudouridylate synthase domain containing 2 [Homo
sapiens]
Length = 545
Score = 1127 bits (2916), Expect = 0.0
Identities = 545/545 (100%), Positives = 545/545 (100%)
Query: 1 MWLDRRGWLRVLGHWRYDLRRPSFTRTWSGDKGPMAETVSTQVGTEGGLRASHQQNGDAG 60
MWLDRRGWLRVLGHWRYDLRRPSFTRTWSGDKGPMAETVSTQVGTEGGLRASHQQNGDAG
Sbjct: 1 MWLDRRGWLRVLGHWRYDLRRPSFTRTWSGDKGPMAETVSTQVGTEGGLRASHQQNGDAG 60
Query: 61 GDAKVELSPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKKRRGATRERVVPPPKKRRTG 120
GDAKVELSPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKKRRGATRERVVPPPKKRRTG
Sbjct: 61 GDAKVELSPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKKRRGATRERVVPPPKKRRTG 120
Query: 121 VSFGDEHFAETSYYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEA 180
VSFGDEHFAETSYYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEA
Sbjct: 121 VSFGDEHFAETSYYFEGGLRKVRPYYFDFRTYCKGRWVGHSLLHVFSTEFRAQPLAYYEA 180
Query: 181 AVRAGRLQLNEKPVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSS 240
AVRAGRLQLNEKPVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSS
Sbjct: 181 AVRAGRLQLNEKPVQDLNIVLKDNDFLRNTVHRHEPPVTAEPIRLLAENEDVVVVDKPSS 240
Query: 241 IPVHPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDR 300
IPVHPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDR
Sbjct: 241 IPVHPCGRFRHNTVIFILGKEHQLKELHPLHRLDRLTSGVLMFAKTAAVSERIHEQVRDR 300
Query: 301 QLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVV 360
QLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVV
Sbjct: 301 QLEKEYVCRVEGEFPTEEVTCKEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVV 360
Query: 361 RCRPLTGRTHQIRVHLQFLGHPILNDPIYNSVAWGPSRGRGGYIPKTNEELLRDLVAEHQ 420
RCRPLTGRTHQIRVHLQFLGHPILNDPIYNSVAWGPSRGRGGYIPKTNEELLRDLVAEHQ
Sbjct: 361 RCRPLTGRTHQIRVHLQFLGHPILNDPIYNSVAWGPSRGRGGYIPKTNEELLRDLVAEHQ 420
Query: 421 AKQSLDVLDLCEGDLSPGLTDSTAPSSELGKDDLEELAAAAQKMEEVAEAAPQELDTIAL 480
AKQSLDVLDLCEGDLSPGLTDSTAPSSELGKDDLEELAAAAQKMEEVAEAAPQELDTIAL
Sbjct: 421 AKQSLDVLDLCEGDLSPGLTDSTAPSSELGKDDLEELAAAAQKMEEVAEAAPQELDTIAL 480
Query: 481 ASEKAVETDVMNQETDPLCAECRLVRQDPLPQDLVMFLHALRYKGPGFEYFSPMPAWAQD 540
ASEKAVETDVMNQETDPLCAECRLVRQDPLPQDLVMFLHALRYKGPGFEYFSPMPAWAQD
Sbjct: 481 ASEKAVETDVMNQETDPLCAECRLVRQDPLPQDLVMFLHALRYKGPGFEYFSPMPAWAQD 540
Query: 541 DWQKD 545
DWQKD
Sbjct: 541 DWQKD 545
>gi|221316667 RNA pseudouridylate synthase domain containing 4
isoform b [Homo sapiens]
Length = 346
Score = 80.1 bits (196), Expect = 5e-15
Identities = 74/237 (31%), Positives = 119/237 (50%), Gaps = 28/237 (11%)
Query: 167 STEFRAQPLAYYEAAVRAGRLQLNEK--PVQDLNIVLKDNDFLRNT--VHRHEPPVTAEP 222
ST AQ LA +RA + + + K PV + + + +R T + R P V A+
Sbjct: 38 STAINAQRLA---EKLRAQKREQDTKKEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKA 94
Query: 223 IR--LLAENEDVVVVDKPSSIPVH--PCGRFRHNTVIFILGKE---HQLKELHPLHRLDR 275
+ +L +++++VV++KP +PVH P + V+ IL K H+ + LH HRLD+
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDK 154
Query: 276 LTSGVLMFAKTAAVSERIHEQVRDRQLEKEY-VCRVEGEFPTEEVTCKEPILVVSYKVGV 334
T+GV++ A ++ ++ E R RQ+ K+Y V P+ V V +
Sbjct: 155 ETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGV------------VDI 202
Query: 335 CRVDPRGKPCETVFQRLSYNGQSSVVRCRPLTGRTHQIRVHLQF-LGHPILNDPIYN 390
V+ + T +Q LS S++V +P+TG HQ+RVHL F L PIL D Y+
Sbjct: 203 PIVEKEAQVAVTQYQVLSSTLSSALVELQPITGIKHQLRVHLSFGLDCPILGDHKYS 259
>gi|221316663 RNA pseudouridylate synthase domain containing 4
isoform a [Homo sapiens]
Length = 377
Score = 75.9 bits (185), Expect = 9e-14
Identities = 73/256 (28%), Positives = 121/256 (47%), Gaps = 35/256 (13%)
Query: 167 STEFRAQPLAYYEAAVRAGRLQLNEK--PVQDLNIVLKDNDFLRNT--VHRHEPPVTAEP 222
ST AQ LA +RA + + + K PV + + + +R T + R P V A+
Sbjct: 38 STAINAQRLA---EKLRAQKREQDTKKEPVSTNAVQRRVQEIVRFTRQLQRVHPNVLAKA 94
Query: 223 IR--LLAENEDVVVVDKPSSIPVH--PCGRFRHNTVIFILGKE---HQLKELHPLHRLDR 275
+ +L +++++VV++KP +PVH P + V+ IL K H+ + LH HRLD+
Sbjct: 95 LTRGILHQDKNLVVINKPYGLPVHGGPGVQLCITDVLPILAKMLHGHKAEPLHLCHRLDK 154
Query: 276 LTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVC--------------------RVEGEFP 315
T+GV++ A ++ ++ E R RQ+ K+Y +G+
Sbjct: 155 ETTGVMVLAWDKDMAHQVQELFRTRQVVKKYWAITVHVPMPSAGVVDIPIVEKEAQGQQQ 214
Query: 316 TEEVTCKEPILVVSYKVGVCRVDPRGKPCETVFQRLSYNGQSSVVRCRPLTGRTHQIRVH 375
++T + K+ R + T +Q LS S++V +P+TG HQ+RVH
Sbjct: 215 HHKMTLSPSYRMDDGKMVKVRRSRNAQVAVTQYQVLSSTLSSALVELQPITGIKHQLRVH 274
Query: 376 LQF-LGHPILNDPIYN 390
L F L PIL D Y+
Sbjct: 275 LSFGLDCPILGDHKYS 290
>gi|17158025 RNA pseudouridylate synthase domain containing 1 [Homo
sapiens]
Length = 312
Score = 60.1 bits (144), Expect = 5e-09
Identities = 45/141 (31%), Positives = 65/141 (46%), Gaps = 25/141 (17%)
Query: 271 HRLDRLTSGVLMFAKTAAVSERIHEQVRDRQLEKEYVCRVEGEFPTEEVTCKEPILVVSY 330
H+LD TSG L A A + + ++R++ K Y+ + G VT +S+
Sbjct: 64 HQLDFSTSGALCVALNKAAAGSAYRCFKERRVTKAYLALLRGHIQESRVT-------ISH 116
Query: 331 KVG----------VCRVDPRG----KPCET---VFQRLSYNGQS-SVVRCRPLTGRTHQI 372
+G +C +G KP T V + Y G S V +PLTGRTHQ+
Sbjct: 117 AIGRNSTEGRAHTMCIEGSQGCENPKPSLTDLVVLEHGLYAGDPVSKVLLKPLTGRTHQL 176
Query: 373 RVHLQFLGHPILNDPIYNSVA 393
RVH LGHP++ D Y V+
Sbjct: 177 RVHCSALGHPVVGDLTYGEVS 197
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 40.4 bits (93), Expect = 0.004
Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 70 GPPKPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKKRRTGVSFGDE 126
GPP P G+ P P GG P P PGK + +G + + PPP K + GD+
Sbjct: 49 GPPSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDK 107
Score = 35.4 bits (80), Expect = 0.13
Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 61 GDAKVELSPGPP-KPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKKR 117
GD K S PP KP G P P GG P P PGK + +G + + PPP K
Sbjct: 166 GDNKSRSSRSPPGKPQG----PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKP 221
Query: 118 RTGVSFGD 125
+ GD
Sbjct: 222 QGPPPQGD 229
Score = 35.0 bits (79), Expect = 0.18
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 68 SPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKKRRTGVSFGD 125
S P P G+ P P GG P P PGK + +G + + PPP K + GD
Sbjct: 108 SRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGD 167
Score = 34.7 bits (78), Expect = 0.23
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 61 GDAKVELSPGPP-KPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKK 116
GD K + + PP KP G P P GG P P PGK + +G + + PPP K
Sbjct: 228 GDNKSQSARSPPGKPQG----PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 282
Score = 33.5 bits (75), Expect = 0.51
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 61 GDAKVELSPGPP-KPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKK 116
G +K S PP KP G P P GG P P PGK + +G + + PPP K
Sbjct: 290 GGSKSRSSRSPPGKPQG----PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 344
Score = 31.6 bits (70), Expect = 1.9
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 70 GPPKPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKKRRTG 120
GPP P G+ P P GG P P PGK + +G ++ R P + G
Sbjct: 317 GPPPPPGKPQGPPPQGGNKPQGPPP-PGKPQGPPPQGGSKSRSARSPPGKPQG 368
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 39.7 bits (91), Expect = 0.007
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 66 ELSPGPPKPAGREVEP---APVGGEHPSAAAPGPGKHKKRRGATRERVVPPPKKRRTGVS 122
E P +PAG E AP+ P A P P R ++ ++PPPKKRR VS
Sbjct: 1110 EQEASPARPAGPTEESPPSAPLRPPEPPAGPPAPAPRPDERPSSPIPLLPPPKKRRKTVS 1169
Query: 123 F 123
F
Sbjct: 1170 F 1170
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 37.4 bits (85), Expect = 0.035
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G+ GP+ EGG R GD G D + PG P P G P P+G P
Sbjct: 1178 GNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG-QPGSPGPTGENGPPGPLGKRGP 1236
Query: 90 SAAAPGPGKHKKRRGA 105
A +PG + +GA
Sbjct: 1237 -AGSPGSEGRQGGKGA 1251
Score = 36.2 bits (82), Expect = 0.079
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G+KG E+ S + E G++ + G+ G + PGPP P G + P G P
Sbjct: 1124 GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPG-EPGPPGPKGPTGDDGPKGNPGP 1182
Query: 90 -----SAAAPGPGKHKKRRGATRER 109
PG G + + GA +R
Sbjct: 1183 VGFPGDPGPPGEGGPRGQDGAKGDR 1207
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 37.4 bits (85), Expect = 0.035
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G+ GP+ EGG R GD G D + PG P P G P P+G P
Sbjct: 1157 GNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG-QPGSPGPTGENGPPGPLGKRGP 1215
Query: 90 SAAAPGPGKHKKRRGA 105
A +PG + +GA
Sbjct: 1216 -AGSPGSEGRQGGKGA 1230
Score = 36.2 bits (82), Expect = 0.079
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G+KG E+ S + E G++ + G+ G + PGPP P G + P G P
Sbjct: 1103 GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPG-EPGPPGPKGPTGDDGPKGNPGP 1161
Query: 90 -----SAAAPGPGKHKKRRGATRER 109
PG G + + GA +R
Sbjct: 1162 VGFPGDPGPPGEGGPRGQDGAKGDR 1186
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 37.4 bits (85), Expect = 0.035
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G+ GP+ EGG R GD G D + PG P P G P P+G P
Sbjct: 1264 GNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEPG-QPGSPGPTGENGPPGPLGKRGP 1322
Query: 90 SAAAPGPGKHKKRRGA 105
A +PG + +GA
Sbjct: 1323 -AGSPGSEGRQGGKGA 1337
Score = 36.2 bits (82), Expect = 0.079
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G+KG E+ S + E G++ + G+ G + PGPP P G + P G P
Sbjct: 1210 GEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPG-EPGPPGPKGPTGDDGPKGNPGP 1268
Query: 90 -----SAAAPGPGKHKKRRGATRER 109
PG G + + GA +R
Sbjct: 1269 VGFPGDPGPPGEGGPRGQDGAKGDR 1293
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 37.0 bits (84), Expect = 0.046
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
GD GP E GG + ++GD G PGPP P+G P P G P
Sbjct: 1327 GDPGPPGEPGPAGQDGVGGDKG---EDGDPG-------QPGPPGPSGEAGPPGPPGKRGP 1376
Query: 90 SAAAPGPGKHKKRRGATRERVVPPPKK 116
AA G+ ++ PP K
Sbjct: 1377 PGAAGAEGRQGEKGAKGEAGAEGPPGK 1403
Score = 30.8 bits (68), Expect = 3.3
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQ---NGDAGGDAKVELSPGPPKPAGREVEPAPVG 85
+G GP + T G R + G +GGD PGPP G + PVG
Sbjct: 885 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP----PGPPGERGPQGPQGPVG 940
Query: 86 GEHPSAAAPGPGK-----HKKRRGAT 106
P PGK H +RG T
Sbjct: 941 FPGPKGPPGPPGKDGLPGHPGQRGET 966
Score = 30.4 bits (67), Expect = 4.3
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G KGP T+S Q E +A QQ A++ L GPP P G P PVGG
Sbjct: 515 GSKGP---TISAQ---EAQAQAILQQ-------ARIALR-GPPGPMGLTGRPGPVGGPGS 560
Query: 90 SAAA-----PGP 96
S A PGP
Sbjct: 561 SGAKGESGDPGP 572
Score = 30.0 bits (66), Expect = 5.7
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 33 GPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVE---LSPGPPKPAGREVEPAPVGGEHP 89
G AET T+ G ++ + G G A VE L GPP PAG P G + P
Sbjct: 416 GVPAETDITETSING--HGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGP 473
Query: 90 SAAAPGPG 97
+ PG
Sbjct: 474 TGPPGDPG 481
Score = 30.0 bits (66), Expect = 5.7
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQNGDAG--GDAKVELSPGPPKPAGREVEPAPVG- 85
+G+ GP E GG + + G+AG G A + GPP G + P PVG
Sbjct: 1272 AGNPGPPGEA------GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGF 1325
Query: 86 -GEHPSAAAPGP 96
G+ PGP
Sbjct: 1326 PGDPGPPGEPGP 1337
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 37.0 bits (84), Expect = 0.046
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
GD GP E GG + ++GD G PGPP P+G P P G P
Sbjct: 1276 GDPGPPGEPGPAGQDGVGGDKG---EDGDPG-------QPGPPGPSGEAGPPGPPGKRGP 1325
Query: 90 SAAAPGPGKHKKRRGATRERVVPPPKK 116
AA G+ ++ PP K
Sbjct: 1326 PGAAGAEGRQGEKGAKGEAGAEGPPGK 1352
Score = 30.8 bits (68), Expect = 3.3
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQ---NGDAGGDAKVELSPGPPKPAGREVEPAPVG 85
+G GP + T G R + G +GGD PGPP G + PVG
Sbjct: 834 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP----PGPPGERGPQGPQGPVG 889
Query: 86 GEHPSAAAPGPGK-----HKKRRGAT 106
P PGK H +RG T
Sbjct: 890 FPGPKGPPGPPGKDGLPGHPGQRGET 915
Score = 30.4 bits (67), Expect = 4.3
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G KGP T+S Q E +A QQ A++ L GPP P G P PVGG
Sbjct: 464 GSKGP---TISAQ---EAQAQAILQQ-------ARIALR-GPPGPMGLTGRPGPVGGPGS 509
Query: 90 SAAA-----PGP 96
S A PGP
Sbjct: 510 SGAKGESGDPGP 521
Score = 30.0 bits (66), Expect = 5.7
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 33 GPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVE---LSPGPPKPAGREVEPAPVGGEHP 89
G AET T+ G ++ + G G A VE L GPP PAG P G + P
Sbjct: 365 GVPAETDITETSING--HGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGP 422
Query: 90 SAAAPGPG 97
+ PG
Sbjct: 423 TGPPGDPG 430
Score = 30.0 bits (66), Expect = 5.7
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQNGDAG--GDAKVELSPGPPKPAGREVEPAPVG- 85
+G+ GP E GG + + G+AG G A + GPP G + P PVG
Sbjct: 1221 AGNPGPPGEA------GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGF 1274
Query: 86 -GEHPSAAAPGP 96
G+ PGP
Sbjct: 1275 PGDPGPPGEPGP 1286
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 37.0 bits (84), Expect = 0.046
Identities = 26/87 (29%), Positives = 33/87 (37%), Gaps = 10/87 (11%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
GD GP E GG + ++GD G PGPP P+G P P G P
Sbjct: 1315 GDPGPPGEPGPAGQDGVGGDKG---EDGDPG-------QPGPPGPSGEAGPPGPPGKRGP 1364
Query: 90 SAAAPGPGKHKKRRGATRERVVPPPKK 116
AA G+ ++ PP K
Sbjct: 1365 PGAAGAEGRQGEKGAKGEAGAEGPPGK 1391
Score = 30.8 bits (68), Expect = 3.3
Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 12/86 (13%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQ---NGDAGGDAKVELSPGPPKPAGREVEPAPVG 85
+G GP + T G R + G +GGD PGPP G + PVG
Sbjct: 873 AGKPGPRGQRGPTGPRGSRGARGPTGKPGPKGTSGGDGP----PGPPGERGPQGPQGPVG 928
Query: 86 GEHPSAAAPGPGK-----HKKRRGAT 106
P PGK H +RG T
Sbjct: 929 FPGPKGPPGPPGKDGLPGHPGQRGET 954
Score = 30.4 bits (67), Expect = 4.3
Identities = 28/72 (38%), Positives = 32/72 (44%), Gaps = 19/72 (26%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G KGP T+S Q E +A QQ A++ L GPP P G P PVGG
Sbjct: 503 GSKGP---TISAQ---EAQAQAILQQ-------ARIALR-GPPGPMGLTGRPGPVGGPGS 548
Query: 90 SAAA-----PGP 96
S A PGP
Sbjct: 549 SGAKGESGDPGP 560
Score = 30.0 bits (66), Expect = 5.7
Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 33 GPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVE---LSPGPPKPAGREVEPAPVGGEHP 89
G AET T+ G ++ + G G A VE L GPP PAG P G + P
Sbjct: 404 GVPAETDITETSING--HGAYGEKGQKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGP 461
Query: 90 SAAAPGPG 97
+ PG
Sbjct: 462 TGPPGDPG 469
Score = 30.0 bits (66), Expect = 5.7
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 10/72 (13%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQNGDAG--GDAKVELSPGPPKPAGREVEPAPVG- 85
+G+ GP E GG + + G+AG G A + GPP G + P PVG
Sbjct: 1260 AGNPGPPGEA------GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPGPVGF 1313
Query: 86 -GEHPSAAAPGP 96
G+ PGP
Sbjct: 1314 PGDPGPPGEPGP 1325
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 36.6 bits (83), Expect = 0.061
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 68 SPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKKRRTGVSFGD 125
S P P G+ P P GG P P PGK + +G R + PPP K + GD
Sbjct: 87 SRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNRPQGPPPPGKPQGPPPQGD 146
Query: 126 E 126
+
Sbjct: 147 K 147
Score = 35.0 bits (79), Expect = 0.18
Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 68 SPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKKRRTGVSFGD 125
S P P G+ P P GG P P PGK + +G + + PPP K + GD
Sbjct: 148 SRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGPPPQGGKKPQGPPPPGKPQGPPPQGD 207
Query: 126 E 126
+
Sbjct: 208 K 208
Score = 32.3 bits (72), Expect = 1.1
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 65 VELSPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKKRRTGVS 122
V P AG P+P GG P P PGK + +G + + PPP K +
Sbjct: 23 VSQEESPSLIAGNPQGPSPQGGNKPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPP 82
Query: 123 FGDE 126
GD+
Sbjct: 83 QGDK 86
Score = 32.3 bits (72), Expect = 1.1
Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 61 GDAKVELSPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHK--KRRGATRERVVPPPKK 116
GD P KP G P P GG P P PGK + +G + + PPP K
Sbjct: 206 GDKSRSSQSPPGKPQG----PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK 259
Score = 31.6 bits (70), Expect = 1.9
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 70 GPPKPAGREVEPAPVGGEHPSAAAPGPGKHK---KRRGATRERVVPPPKK 116
GPP P G+ P P GG P P PGK + + G+ + PP K
Sbjct: 232 GPPPPPGKPQGPPPQGGNKPQGPPP-PGKPQGPPAQGGSKSQSARSPPGK 280
>gi|23503317 coiled-coil domain containing 96 [Homo sapiens]
Length = 555
Score = 36.2 bits (82), Expect = 0.079
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 37 ETVSTQVGTEGGLRASHQQNGDAG---GDAKVELSPGPP----KPAGREVEPAPVGGEHP 89
E Q ++GG A Q G +A E PG P +P EPA VG E P
Sbjct: 49 EEEEEQAASQGGTAADEQAEAPKGLTAAEAAGEEGPGEPGRPAEPQPEPEEPAEVGAEEP 108
Query: 90 SAAAPGPGKHKKRRGATRERV 110
+ PG G + A E +
Sbjct: 109 AQPEPGAGPEELEAEAGAEEL 129
>gi|37537692 proline-rich protein BstNI subfamily 4 precursor [Homo
sapiens]
Length = 247
Score = 35.8 bits (81), Expect = 0.10
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 68 SPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKK---RRGATRERVVPPPKK 116
S GPP G+ P P GG P PGK ++ + G R PPP K
Sbjct: 89 SQGPPPHPGKPERPPPQGGNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGK 140
Score = 34.7 bits (78), Expect = 0.23
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 68 SPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKK--RRGATRERVVPPP 114
S GPP P G+ P GG P PGK ++ +G + + PPP
Sbjct: 68 SQGPPPPPGKPEGRPPQGGNQSQGPPPHPGKPERPPPQGGNQSQGTPPP 116
Score = 32.3 bits (72), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 71 PPKPAGREVEPAPVGGEHPSAAAPGPGKHKKR--RGATRERVVPP 113
PP P G+ P P GG P PGK + R +G + + PP
Sbjct: 50 PPPPPGKPQGPPPQGGNQSQGPPPPPGKPEGRPPQGGNQSQGPPP 94
Score = 31.6 bits (70), Expect = 1.9
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 68 SPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKK--RRGATRERVVPP 113
S G P P G+ P P GG P PGK ++ +G + + PP
Sbjct: 110 SQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGGNQSQGPPP 157
Score = 30.4 bits (67), Expect = 4.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 71 PPKPAGREVEPAPVGGEHPSAAAPGPGK 98
PP P G+ P P GG P PGK
Sbjct: 134 PPPPPGKPERPPPQGGNQSQGPPPHPGK 161
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/102 (29%), Positives = 37/102 (36%), Gaps = 16/102 (15%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQNGDAG-----------GDAKVELSPGPPKPAGR 77
+G KGP E S G + G+AG G + GPP PAG+
Sbjct: 502 AGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQ 561
Query: 78 EVEPAPVG-----GEHPSAAAPGPGKHKKRRGATRERVVPPP 114
+ P P G G+ PGP G ER VP P
Sbjct: 562 DGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGP 603
Score = 30.8 bits (68), Expect = 3.3
Identities = 25/75 (33%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREV------EPA 82
SG +GP E G S G G V + GPP PAG E EP
Sbjct: 418 SGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ-GPPGPAGEEGKRGARGEPG 476
Query: 83 PVGGEHPSAAAPGPG 97
P G P GPG
Sbjct: 477 PTGLPGPPGERGGPG 491
Score = 30.8 bits (68), Expect = 3.3
Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAG--GDAKVELSPGPPKPAGREVEPAPVGGE 87
G GP E G+ G AG G+A + PGP PAG E P G
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP 640
Query: 88 HPSAAAPGPGKHKKRRGATRERVVP 112
PGP G E+ VP
Sbjct: 641 -GFQGLPGPAGPPGEAGKPGEQGVP 664
Score = 30.8 bits (68), Expect = 3.3
Identities = 26/78 (33%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEH 88
SG+ GP G EGG + + G AG +V GPP P G E G +
Sbjct: 889 SGNAGPPGPP--GPAGKEGG-KGPRGETGPAGRPGEV----GPPGPPGPAGEKGSPGADG 941
Query: 89 PSAA--APGPGKHKKRRG 104
P+ A PGP +RG
Sbjct: 942 PAGAPGTPGPQGIAGQRG 959
Score = 30.4 bits (67), Expect = 4.3
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 68 SPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKKRRGATRE---RVVPPPKKRRTG 120
+PG G + EP PVG + P PGP + +RGA E +P P R G
Sbjct: 438 APGSKGDTGAKGEPGPVGVQGP----PGPAGEEGKRGARGEPGPTGLPGPPGERGG 489
Score = 30.4 bits (67), Expect = 4.3
Identities = 36/112 (32%), Positives = 42/112 (37%), Gaps = 23/112 (20%)
Query: 22 PSFTRTWSGDKG-PMAETVSTQVGTEG--GLRASHQQNGDAG--GDAKVELSPGPPKPAG 76
P+ R GD+G P + G G G + + GDAG GDA GPP PAG
Sbjct: 792 PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDA------GPPGPAG 845
Query: 77 REVEPAPVG--------GEHPSAAAPGPGKHKKRRGATRERVVPPPKKRRTG 120
P P+G G SA PG G RV PP G
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAG----RVGPPGPSGNAG 893
Score = 29.6 bits (65), Expect = 7.4
Identities = 18/45 (40%), Positives = 19/45 (42%), Gaps = 8/45 (17%)
Query: 69 PGPPKPAGREVEPAPVG--------GEHPSAAAPGPGKHKKRRGA 105
PGPP PAG+E P G GE PGP K GA
Sbjct: 895 PGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGA 939
>gi|32483399 p21-activated kinase 2 [Homo sapiens]
Length = 524
Score = 35.4 bits (80), Expect = 0.13
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 81 PAPVGGEHPSAAAPGPGKHKKRRGATRERVVPPPKKRRTGVSFGDEHFAETSY 133
PAPVG H AA K KK+ T E ++ +K RT VS GD T Y
Sbjct: 203 PAPVGDSHVDGAAKSLDKQKKKTKMTDEEIM---EKLRTIVSIGDPKKKYTRY 252
>gi|153792633 hypothetical protein LOC26049 [Homo sapiens]
Length = 670
Score = 35.4 bits (80), Expect = 0.13
Identities = 30/117 (25%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 398 RGRGGYIPKTNEELLRDLVAEHQAKQSLDVLDLC--EGDLSPGLTDSTAPSSELGKDDLE 455
R GG+ E + V+E+ + + L+ EG P T + P S L + +LE
Sbjct: 538 RSDGGFPNSVIAEFSEEPVSENLSPNTTSSLEDQGEEGVSEPQETSTALPQSSLIEVELE 597
Query: 456 EL-----AAAAQKMEEVAEAAPQELDTIALASEKAVETDVMNQETDPLCAECRLVRQ 507
++ A + EE +EA+ ++LD ++EKAV++ E + + R +R+
Sbjct: 598 DVPFSQNAGQKNQSEEQSEASSEQLDQFTQSAEKAVDSSSEEIEVEVPVVDRRNLRR 654
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 35.0 bits (79), Expect = 0.18
Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 8/96 (8%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKV--------ELSPGPPKPAGREVE 80
+G +G E V G+R G G D K PGPP P+G +
Sbjct: 515 AGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPPGPSGPRGQ 574
Query: 81 PAPVGGEHPSAAAPGPGKHKKRRGATRERVVPPPKK 116
P +G P PGK+ +R G PP K
Sbjct: 575 PGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGK 610
Score = 32.0 bits (71), Expect = 1.5
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 13/90 (14%)
Query: 31 DKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAG--------REVEPA 82
D P ++ + + G+ GG + +NG G PGPP P G E PA
Sbjct: 1013 DGNPGSDGLPGRDGSPGG-KGDRGENGSPGAPGAPG-HPGPPGPVGPAGKSGDRGESGPA 1070
Query: 83 -PVGGEHP--SAAAPGPGKHKKRRGATRER 109
P G P S APGP + +G T ER
Sbjct: 1071 GPAGAPGPAGSRGAPGPQGPRGDKGETGER 1100
Score = 31.2 bits (69), Expect = 2.5
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 22 PSFTRTWSGDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGRE--- 78
P+ +R G +GP + T G++ G+ G +PG P PAG++
Sbjct: 1078 PAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPG-------APGSPGPAGQQGAI 1130
Query: 79 VEPAPVGGEHPSAAAPGPGK 98
P P G P + PGK
Sbjct: 1131 GSPGPAGPRGPVGPSGPPGK 1150
Score = 29.3 bits (64), Expect = 9.7
Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 13/89 (14%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDA-------KVELSP----GPPKPAGR 77
+G +G E T G + QNG+ GG K E P GPP +G
Sbjct: 791 AGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGP 850
Query: 78 EVEPAPVG--GEHPSAAAPGPGKHKKRRG 104
P P G GE S PG RG
Sbjct: 851 AGPPGPQGVKGERGSPGGPGAAGFPGARG 879
>gi|91823274 autotaxin isoform 1 preproprotein [Homo sapiens]
Length = 915
Score = 35.0 bits (79), Expect = 0.18
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 83 PVGGEHPSAAAP-GPGKHKKRRGATR---ERVVPPPKKRRTGVSFGDEHFAET 131
P G E S +P P K KR+ A + ER V PPKKRR + D + AET
Sbjct: 320 PFGPEESSYGSPFTPAKRPKRKVAPKRRQERPVAPPKKRRRKIHRMDHYAAET 372
>gi|182765466 FCH and double SH3 domains 2 [Homo sapiens]
Length = 740
Score = 35.0 bits (79), Expect = 0.18
Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 52 SHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKK----RRGATR 107
S +NGD ++++SP P A + P P+ + PS+ P P K R +
Sbjct: 628 SASENGDTPWMREIQISPSPKPHAS--LPPLPLYDQPPSSPYPSPDKRSSLYFPRSPSAN 685
Query: 108 ERVVPPPKKRRTGVSFGDEHFAETSYYFEGGLRKVR 143
E+ + G S H ETSY G LR VR
Sbjct: 686 EKSL---HAESPGFSQASRHTPETSY---GKLRPVR 715
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 35.0 bits (79), Expect = 0.18
Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 59 AGGDAKVELSPGPPKPAGREVEPAPVGGEHPSAAAP-------GPGKHKKRRGATRERVV 111
A A SPGP +P R AP+ P+ AAP GP + A RE +
Sbjct: 152 AAAAATAPPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPL 211
Query: 112 PPP 114
PPP
Sbjct: 212 PPP 214
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 34.7 bits (78), Expect = 0.23
Identities = 34/102 (33%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 22 PSFTRTWSGDKGPMAETVSTQVGTEG--GLRASHQQNGDAGGDAKVELS-----PGPPKP 74
P+ R +GD G E G G GL S G AG + V L PGP P
Sbjct: 428 PAGVRGPNGDAGRPGEP-----GLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGP 482
Query: 75 AGREVEPAPVGGEHPSAAAPGPGKH--KKRRGATRERVVPPP 114
AG EP +G P PGK+ K G R P P
Sbjct: 483 AGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGP 524
Score = 30.8 bits (68), Expect = 3.3
Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G +GP E S GLR S G G D + + GPP G PA V G +
Sbjct: 379 GKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADGRAGVM-GPPGSRGAS-GPAGVRGPNG 436
Query: 90 SAAAPG-PG 97
A PG PG
Sbjct: 437 DAGRPGEPG 445
Score = 30.8 bits (68), Expect = 3.3
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 7/87 (8%)
Query: 29 SGDKGPMAETVSTQVGTEGGLRASHQQNGDAG--GDAKVELSPGPPKPAGREVEPAPVGG 86
+G GP S G G+ G G G + + PGPP PAG+E P G
Sbjct: 765 AGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGD 824
Query: 87 EHP-----SAAAPGPGKHKKRRGATRE 108
+ P A GP +G + E
Sbjct: 825 QGPVGRTGEVGAVGPPGFAGEKGPSGE 851
Score = 30.0 bits (66), Expect = 5.7
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 30 GDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVGGEHP 89
G G T + + E G S ++G+ G GPP P+G E + P GE
Sbjct: 331 GPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAG-PQGPPGPSGEEGKRGP-NGEAG 388
Query: 90 SAAAPGP 96
SA PGP
Sbjct: 389 SAGPPGP 395
Score = 29.3 bits (64), Expect = 9.7
Identities = 29/90 (32%), Positives = 39/90 (43%), Gaps = 20/90 (22%)
Query: 30 GDKGPMAETVSTQVGTEG--GLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVG-- 85
G+ GP+ ++ G G G S NG A G+A + +PG P GR+ +P G
Sbjct: 892 GEPGPLG--IAGPPGARGPPGAVGSPGVNG-APGEAGRDGNPGNDGPPGRDGQPGHKGER 948
Query: 86 ------GEHPSAAAPGP-------GKHKKR 102
G +A APGP GKH R
Sbjct: 949 GYPGNIGPVGAAGAPGPHGPVGPAGKHGNR 978
>gi|55749932 desmin [Homo sapiens]
Length = 470
Score = 34.7 bits (78), Expect = 0.23
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 403 YIPKTNEELLRDLVAEHQAKQSLDVLDLCEGDLSPGLTDSTAPSSELGKDDLEELAA-AA 461
++ K +EE +R+L A+ Q +Q +D+ + DL+ L D A + ++ E
Sbjct: 238 FLKKVHEEEIRELQAQLQEQQVQVEMDMSKPDLTAALRDIRAQYETIAAKNISEAEEWYK 297
Query: 462 QKMEEVAEAAPQELDTIALASEKAVE 487
K+ ++ +AA + D + A ++ +E
Sbjct: 298 SKVSDLTQAANKNNDALRQAKQEMME 323
>gi|239745414 PREDICTED: NPIP-like protein 2 isoform 2 [Homo
sapiens]
Length = 380
Score = 34.3 bits (77), Expect = 0.30
Identities = 19/57 (33%), Positives = 27/57 (47%)
Query: 62 DAKVELSPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKKRRGATRERVVPPPKKRR 118
+A+ E P P + E+E P +A P + K+RR A E P PK+RR
Sbjct: 312 EAEAEKPPKPKRWRAAEMESPPEPKRRRAAEVESPPEPKRRRAAEVEPSSPEPKRRR 368
>gi|44662836 breast cancer anti-estrogen resistance 1 [Homo sapiens]
Length = 870
Score = 34.3 bits (77), Expect = 0.30
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 8/92 (8%)
Query: 12 LGHWRYDLRRPSFTRTWSGDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGP 71
+GH Y + TR+W G K P V T+VG +G + + Q D + L+PGP
Sbjct: 187 MGHDIYQVPPSMDTRSWEGTKPPAKVVVPTRVG-QGYVYEAAQPEQDEYDIPRHLLAPGP 245
Query: 72 PK----PAGREVEPAPVGGE---HPSAAAPGP 96
P R + P+ G E P A GP
Sbjct: 246 QDIYDVPPVRGLLPSQYGQEVYDTPPMAVKGP 277
>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
sapiens]
Length = 406
Score = 34.3 bits (77), Expect = 0.30
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 43 VGTEGGLRASHQQNGDAGGDAKVELSPGPP--KPAGREVEPAPV-----GGEHPSAAAPG 95
VGTEG + + Q GG + PP KP ++ EP + E P G
Sbjct: 61 VGTEGSVPSDDQDREGGGGHEPEQQQEEPPLTKPEQQQEEPPLLELKQEQEEPPQTTVEG 120
Query: 96 PGKHKKRRGATRERVVPPPKKRRTGVSFGDEHFAETSYYFE 136
P T E PP +KRR +F E +F+
Sbjct: 121 P--QPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFD 159
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 33.9 bits (76), Expect = 0.39
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 48 GLRASHQQNGDAGGDAKVELS--------PGPPKPAGREVEPAPVGGEHPSAAAPGPGK 98
G R + GDAG KV S PGPP P G +P +G P A PGK
Sbjct: 558 GARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK 616
Score = 31.6 bits (70), Expect = 1.9
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 22 PSFTRTWSGDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEP 81
P+ R G +GP + E GL+ G G PGPP P+G +
Sbjct: 1102 PAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG-------LPGPPGPSGDQGAS 1154
Query: 82 APVGGEHPSAAAPGPGKHKKRRGAT--RERVVPPPKKRRTG 120
P G P PGP + GA + PP + R+G
Sbjct: 1155 GPAGPSGP-RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1194
Score = 30.8 bits (68), Expect = 3.3
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 41 TQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEPAPVG--GEHPSAAAPGP 96
T + T G Q G+ G + GPP P G E P G G+ APGP
Sbjct: 91 TDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGDRGDKGEKGAPGP 148
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 33.9 bits (76), Expect = 0.39
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 48 GLRASHQQNGDAGGDAKVELS--------PGPPKPAGREVEPAPVGGEHPSAAAPGPGK 98
G R + GDAG KV S PGPP P G +P +G P A PGK
Sbjct: 489 GARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGK 547
Score = 31.6 bits (70), Expect = 1.9
Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 10/101 (9%)
Query: 22 PSFTRTWSGDKGPMAETVSTQVGTEGGLRASHQQNGDAGGDAKVELSPGPPKPAGREVEP 81
P+ R G +GP + E GL+ G G PGPP P+G +
Sbjct: 1033 PAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQG-------LPGPPGPSGDQGAS 1085
Query: 82 APVGGEHPSAAAPGPGKHKKRRGAT--RERVVPPPKKRRTG 120
P G P PGP + GA + PP + R+G
Sbjct: 1086 GPAGPSGP-RGPPGPVGPSGKDGANGIPGPIGPPGPRGRSG 1125
>gi|32996733 Ras association (RalGDS/AF-6) domain family 5 isoform B
[Homo sapiens]
Length = 336
Score = 33.9 bits (76), Expect = 0.39
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 6/53 (11%)
Query: 66 ELSPGPPKPAGREVEPAPVGGEHPSAAAPGPGKHKKRRGATRERVVPPPKKRR 118
EL P PP + R PAP+ + APG + + R A R + PPP+ R
Sbjct: 32 ELPPPPPDRSSRLCVPAPL------STAPGAREGRSARRAARGNLEPPPRASR 78
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,806,362
Number of Sequences: 37866
Number of extensions: 1334545
Number of successful extensions: 7017
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 6084
Number of HSP's gapped (non-prelim): 1047
length of query: 545
length of database: 18,247,518
effective HSP length: 107
effective length of query: 438
effective length of database: 14,195,856
effective search space: 6217784928
effective search space used: 6217784928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.