Guide to the Human Genome
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Name: RASSF5 Sequence: fasta or formatted (336aa) NCBI GI: 32996733
Description:

Ras association (RalGDS/AF-6) domain family 5 isoform B

Referenced in:

Ras

Other entries for this name:
alt prot [418aa] Ras association (RalGDS/AF-6) domain family 5 isoform A
alt prot [265aa] Ras association (RalGDS/AF-6) domain family 5 isoform C
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         21           2
 C cysteine            3.6         12           1
 D aspartate           4.2         14           1
 E glutamate           5.7         19           2
 F phenylalanine       2.7          9           1
 G glycine             6.2         21           2
 H histidine           1.8          6           1
 I isoleucine          3.9         13           1
 K lysine              4.8         16           2
 L leucine            10.4         35           3
 M methionine          1.2          4           1
 N asparagine          2.1          7           1
 P proline            12.2         41           5
 Q glutamine           5.7         19           2
 R arginine           10.4         35           3
 S serine              6.5         22           2
 T threonine           5.4         18           3
 V valine              5.1         17           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Ras association (RalGDS/AF-6) domain family 5 isofor... 
RASSF5                0.979   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.377   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF1                0.234   Ras association domain family 1 isoform A 
RASSF1                0.226   Ras association domain family 1 isoform D 
RASSF1                0.160   Ras association domain family 1 isoform C 
RASSF1                0.138   Ras association domain family 1 isoform B 
RASSF3                0.090   Ras association (RalGDS/AF-6) domain family member 3...
LOC100292845          0.031   PREDICTED: hypothetical protein 
LOC100289230          0.031   PREDICTED: hypothetical protein XP_002342600 
LOC100127891          0.030   PREDICTED: hypothetical protein 
GGN                   0.028   gametogenetin 
CDC2L5                0.027   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.027   cell division cycle 2-like 5 isoform 2 
PRKCZ                 0.025   protein kinase C, zeta isoform 1 
PRKCI                 0.025   protein kinase C, iota 
PRKD2                 0.025   protein kinase D2 isoform B 
PRKD2                 0.025   protein kinase D2 isoform A 
PRKD2                 0.025   protein kinase D2 isoform A 
PRKD2                 0.025   protein kinase D2 isoform A 
RASGRP4               0.025   RAS guanyl releasing protein 4 isoform a 
RASGRP4               0.025   RAS guanyl releasing protein 4 isoform g 
RASGRP4               0.025   RAS guanyl releasing protein 4 isoform f 
RASGRP4               0.025   RAS guanyl releasing protein 4 isoform e 
RASGRP4               0.025   RAS guanyl releasing protein 4 isoform d 
RASGRP4               0.025   RAS guanyl releasing protein 4 isoform c 
RASGRP4               0.025   RAS guanyl releasing protein 4 isoform b 
UNC13A                0.024   unc-13 homolog A 
LOC100127891          0.024   PREDICTED: similar to hCG2042508 
LOC100127891          0.024   PREDICTED: similar to hCG2042508 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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