Guide to the Human Genome
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Name: RPUSD4 Sequence: fasta or formatted (346aa) NCBI GI: 221316667
Description:

RNA pseudouridylate synthase domain containing 4 isoform b

Referenced in:

tRNA Enzymes

Other entries for this name:
alt prot [377aa] RNA pseudouridylate synthase domain containing 4 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7         30           5
 C cysteine            2.0          7           1
 D aspartate           3.2         11           1
 E glutamate           4.9         17           2
 F phenylalanine       2.0          7           2
 G glycine             6.1         21           2
 H histidine           4.6         16           1
 I isoleucine          4.3         15           1
 K lysine              6.9         24           2
 L leucine            12.7         44           1
 M methionine          1.7          6           1
 N asparagine          3.5         12           2
 P proline             5.8         20           1
 Q glutamine           6.6         23           1
 R arginine            6.1         21           2
 S serine              4.9         17           2
 T threonine           4.3         15           2
 V valine              8.7         30           2
 W tryptophan          1.4          5           1
 Y tyrosine            1.4          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA pseudouridylate synthase domain containing 4 is... 
RPUSD4                0.976   RNA pseudouridylate synthase domain containing 4 is...
RPUSD3                0.126   RNA pseudouridylate synthase domain containing 3 is...
RPUSD3                0.097   RNA pseudouridylate synthase domain containing 3 is...
RPUSD2                0.082   RNA pseudouridylate synthase domain containing 2 [Ho...
RPUSD1                0.030   RNA pseudouridylate synthase domain containing 1 [Ho...
KIAA1377              0.009   hypothetical protein LOC57562 
KIF4A                 0.007   kinesin family member 4 
C20orf26              0.004   hypothetical protein LOC26074 
HERC4                 0.004   hect domain and RLD 4 isoform b 
HERC4                 0.004   hect domain and RLD 4 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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