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Search of human proteins with 23238194
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23238194 tumor necrosis factor receptor superfamily, member
18 isoform 2 precursor [Homo sapiens]
(255 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23238194 tumor necrosis factor receptor superfamily, member 1... 577 e-165
gi|4759246 tumor necrosis factor receptor superfamily, member 18... 317 8e-87
gi|23238197 tumor necrosis factor receptor superfamily, member 1... 317 8e-87
gi|5730095 tumor necrosis factor receptor superfamily, member 9 ... 50 1e-06
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 49 4e-06
gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo sap... 48 7e-06
gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo sap... 48 9e-06
gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo sap... 48 9e-06
gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo sap... 48 9e-06
gi|134031945 SCO-spondin [Homo sapiens] 45 5e-05
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 45 6e-05
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 44 1e-04
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 44 1e-04
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 44 1e-04
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens] 42 4e-04
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 42 7e-04
gi|7657039 tumor necrosis factor receptor superfamily, member 21... 41 9e-04
gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens] 40 0.002
gi|112421108 capicua homolog [Homo sapiens] 39 0.003
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 39 0.004
gi|4507565 tumor necrosis factor receptor superfamily, member 11... 39 0.004
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 39 0.004
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 39 0.004
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 39 0.004
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 0.004
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 39 0.004
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 39 0.006
gi|222352122 hypothetical protein LOC284297 [Homo sapiens] 38 0.010
gi|89886484 XK, Kell blood group complex subunit-related family,... 38 0.010
>gi|23238194 tumor necrosis factor receptor superfamily, member 18
isoform 2 precursor [Homo sapiens]
Length = 255
Score = 577 bits (1488), Expect = e-165
Identities = 255/255 (100%), Positives = 255/255 (100%)
Query: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60
MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD
Sbjct: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60
Query: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120
YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF
Sbjct: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120
Query: 121 SGGHEGHCKPWTDCCWRCRRRPKTPEAASSPRKSGASDRQRRRGGWETCGCEPGRPPGPP 180
SGGHEGHCKPWTDCCWRCRRRPKTPEAASSPRKSGASDRQRRRGGWETCGCEPGRPPGPP
Sbjct: 121 SGGHEGHCKPWTDCCWRCRRRPKTPEAASSPRKSGASDRQRRRGGWETCGCEPGRPPGPP 180
Query: 181 TAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRERETQ 240
TAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRERETQ
Sbjct: 181 TAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRERETQ 240
Query: 241 SWPPSSLAGPDGVGS 255
SWPPSSLAGPDGVGS
Sbjct: 241 SWPPSSLAGPDGVGS 255
>gi|4759246 tumor necrosis factor receptor superfamily, member 18
isoform 1 precursor [Homo sapiens]
Length = 241
Score = 317 bits (811), Expect = 8e-87
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60
MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD
Sbjct: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60
Query: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120
YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF
Sbjct: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120
Query: 121 SGGHEGHCKPWTDC 134
SGGHEGHCKPWTDC
Sbjct: 121 SGGHEGHCKPWTDC 134
>gi|23238197 tumor necrosis factor receptor superfamily, member 18
isoform 3 precursor [Homo sapiens]
Length = 234
Score = 317 bits (811), Expect = 8e-87
Identities = 134/134 (100%), Positives = 134/134 (100%)
Query: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60
MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD
Sbjct: 1 MAQHGAMGAFRALCGLALLCALSLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRD 60
Query: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120
YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF
Sbjct: 61 YPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTF 120
Query: 121 SGGHEGHCKPWTDC 134
SGGHEGHCKPWTDC
Sbjct: 121 SGGHEGHCKPWTDC 134
>gi|5730095 tumor necrosis factor receptor superfamily, member 9
precursor [Homo sapiens]
Length = 255
Score = 50.4 bits (119), Expect = 1e-06
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 14/87 (16%)
Query: 54 TTRCCRDYPG-----EECCSEWDCMC-VQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFS 107
T CR G +EC S + C P FHC C+ C C GQ + +G
Sbjct: 61 TCDICRQCKGVFRTRKECSSTSNAECDCTPGFHCLGAGCSMCEQD-CKQGQELTKKG--- 116
Query: 108 FGFQCIDCASGTFSGGHEGHCKPWTDC 134
C DC GTF+ G C+PWT+C
Sbjct: 117 ----CKDCCFGTFNDQKRGICRPWTNC 139
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 48.9 bits (115), Expect = 4e-06
Identities = 43/158 (27%), Positives = 55/158 (34%), Gaps = 13/158 (8%)
Query: 42 GTGTDARCCRVHTTRCCRDYPG--EECCSEWDCM-CVQPEFHCGDP---CCTTCRHHPCP 95
G G +RC R T C PG + S C C G CT + C
Sbjct: 49 GNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCR 108
Query: 96 PGQGVQSQGKFSFGFQCIDCASGTFSGGHEGHCKPWTDCCWRCRRRPKTPEAASSPRKSG 155
G Q + G C C G FS G CKPWT+C + T + AS+ +
Sbjct: 109 CRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKH---TLQPASNSSDAI 165
Query: 156 ASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQAA 193
DR T E PP P P+ P+ +
Sbjct: 166 CEDRDPP----ATQPQETQGPPARPITVQPTEAWPRTS 199
Score = 37.4 bits (85), Expect = 0.013
Identities = 32/118 (27%), Positives = 42/118 (35%), Gaps = 11/118 (9%)
Query: 74 CVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGH-CKPWT 132
CV + D CC H C PG G+ S+ S C C G ++ CKP T
Sbjct: 31 CVGDTYPSNDRCC-----HECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSSKPCKPCT 85
Query: 133 DCCWRCRRRPKTPEAASSPR----KSGASDRQRRRGGWETCGCEPGR-PPGPPTAASP 185
C R K A+ ++G + G + C PG PG A P
Sbjct: 86 WCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVDCAPCPPGHFSPGDNQACKP 143
>gi|169171742 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 48.1 bits (113), Expect = 7e-06
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 140 RRPKTPEAASS----PRKSGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQAAGA 195
R+P + AS+ P K A +R GG T +PGRPPG SP PG P G
Sbjct: 240 RQPASHSVASNQSKQPAKLAAVAHERPPGG--TGSVDPGRPPGATCPESPGPGTPHTLGV 297
Query: 196 LRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRERETQS 241
+ ++ W +G PC +A + R+E+++ S
Sbjct: 298 VEPGKSPPPTMEEEPWAPQG------SPCWTAQSLSALRKEQDSSS 337
>gi|169172340 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 47.8 bits (112), Expect = 9e-06
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 140 RRPKTPEAASS----PRKSGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQAAGA 195
R+P + AS+ P K A +R GG T +PGRPPG SP PG P G
Sbjct: 240 RQPASHSVASNQSKQPAKLAAVAHERPPGG--TGSVDPGRPPGATCPESPGPGTPHTLGV 297
Query: 196 LRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRERETQS 241
+ ++ W +G PC +A + R+E+++ S
Sbjct: 298 VEPGKSPPPTMEEEPWAPKG------SPCWTAQSLSALRKEQDSSS 337
>gi|169170016 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 47.8 bits (112), Expect = 9e-06
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 140 RRPKTPEAASS----PRKSGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQAAGA 195
R+P + AS+ P K A +R GG T +PGRPPG SP PG P G
Sbjct: 240 RQPASHSVASNQSKQPAKLAAVAHERPPGG--TGSVDPGRPPGATCPESPGPGTPHTLGV 297
Query: 196 LRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRERETQS 241
+ ++ W +G PC +A + R+E+++ S
Sbjct: 298 VEPGKSPPPTMEEEPWAPKG------SPCWTAQSLSALRKEQDSSS 337
>gi|239508816 PREDICTED: hypothetical protein LOC442676 [Homo
sapiens]
Length = 679
Score = 47.8 bits (112), Expect = 9e-06
Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 140 RRPKTPEAASS----PRKSGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQAAGA 195
R+P + AS+ P K A +R GG T +PGRPPG SP PG P G
Sbjct: 240 RQPASHSVASNQSKQPAKLAAVAHERPPGG--TGSVDPGRPPGATCPESPGPGTPHTLGV 297
Query: 196 LRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRERETQS 241
+ ++ W +G PC +A + R+E+++ S
Sbjct: 298 VEPGKSPPPTMEEEPWAPKG------SPCWTAQSLSALRKEQDSSS 337
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 45.4 bits (106), Expect = 5e-05
Identities = 63/245 (25%), Positives = 82/245 (33%), Gaps = 70/245 (28%)
Query: 20 CALSLGQ--------RPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWD 71
C + LGQ RP G GR G T +R C+ ++T+C D
Sbjct: 3484 CDMCLGQSHRSRACSRPPTPEG---GRPCPGNHTQSRPCQENSTQCT------------D 3528
Query: 72 CMCVQPEFHCGDPCCTTCRH----HPCPPGQGVQSQGKFSFGFQ-CIDCASGTFSGGHEG 126
C Q CG PC +C+ C PG S G Q C G S +G
Sbjct: 3529 CGGGQSLHPCGQPCPRSCQDLSPGSVCQPG---------SVGCQPTCGCPLGQLS--QDG 3577
Query: 127 HCKPWTDCCWRCRRRPKTPEAASSPRKSGASDRQRRRGGWET-------------CGCEP 173
C P C RC+ +P + +S S R WE+ C C
Sbjct: 3578 LCVPPAHC--RCQYQPGAMGIPENQSRSAGS----RFSSWESLEPGEVVTGPCDNCTCVA 3631
Query: 174 GRPPGPPTAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQ-RPGPCSSAAAAGP 232
G P PG + G PW+ V GG +Q R C+ GP
Sbjct: 3632 GILQCQEVPDCPDPGVWSSWG-----------PWEDCSVSCGGGEQLRSRRCARPPCPGP 3680
Query: 233 CRRER 237
R+ R
Sbjct: 3681 ARQSR 3685
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 32 PGCGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCGDPCCTTCRH 91
P CGP G+G C T R G C E DC E CG PC H
Sbjct: 1563 PPCGPFEFRCGSG---EC----TPR------GWRCDQEEDCADGSDERGCGGPCAP--HH 1607
Query: 92 HPCPPGQGVQSQGKFSFGFQCIDCASGTFSG 122
PC G S + G + C G+ G
Sbjct: 1608 APCARGPHCVSPEQLCDGVR--QCPDGSDEG 1636
Score = 30.0 bits (66), Expect = 2.0
Identities = 41/148 (27%), Positives = 50/148 (33%), Gaps = 47/148 (31%)
Query: 67 CSEWDCMCVQP-EFH-CGDPCCTTCRHH----------PCPPGQGVQSQGKFSFGFQCID 114
CSE C P EFH CG PC C H PC PG C
Sbjct: 4418 CSEDSC--TPPFEFHACGSPCAGLCATHLSHQLCQDLPPCQPG--------------CY- 4460
Query: 115 CASGTFSGGHEGHCKPWTDC-CWRCRRRPKTPEAASSPR-KSGASDRQRRRGGWE--TCG 170
C G G C P +C CW A R + G + + RRG + G
Sbjct: 4461 CPKGLLE--QAGGCIPPEECNCWHTSAAGAGMTLAPGDRLQLGCKECECRRGELHCTSQG 4518
Query: 171 CE------------PGRPPGPPTAASPS 186
C+ P P PP+A +P+
Sbjct: 4519 CQGLLPLSEWSEWSPCGPCLPPSALAPA 4546
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 45.1 bits (105), Expect = 6e-05
Identities = 63/232 (27%), Positives = 75/232 (32%), Gaps = 53/232 (22%)
Query: 50 CRVHTTRC--CRDYPGEECCSEWDCMCVQPEFHCGDPCCT---TCRHHPCPPGQGVQ--- 101
C HT C CRD+ G E C C+ FH GDP CR PCP G G Q
Sbjct: 886 CNTHTGACLGCRDHTGGEHCER----CIAG-FH-GDPRLPYGGQCRPCPCPEGPGSQRHF 939
Query: 102 ----SQGKFS-----------FGFQCIDCASGTFS-----GGH--------------EGH 127
Q ++S G +C CA G F GG
Sbjct: 940 ATSCHQDEYSQQIVCHCRAGYTGLRCEACAPGHFGDPSRPGGRCQLCECSGNIDPMDPDA 999
Query: 128 CKPWTDCCWRCRRRPKTPEAA-SSPRKSGASDRQR-RRGGWETCGCEPGRPPGPPTA-AS 184
C P T C RC + P A P G + RQ R G P + P P
Sbjct: 1000 CDPHTGQCLRCLHHTEGPHCAHCKPGFHGQAARQSCHRCTCNLLGTNPQQCPSPDQCHCD 1059
Query: 185 PSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRE 236
PS G ++ P W G +P C + A GP E
Sbjct: 1060 PSSGQCPCLPNVQGPSCDRCAP--NFWNLTSGHGCQPCACHPSRARGPTCNE 1109
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 43.9 bits (102), Expect = 1e-04
Identities = 46/136 (33%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 118 GTFS----GGHEGHCKPWTDCCWRCRRRPKTPEAASSPRKSGASDR--------QRRRGG 165
GTFS G E P D R RP P S P +SG+ + + G
Sbjct: 57 GTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG 116
Query: 166 WETCGCEPGRPPGPPTA-ASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQ---RP 221
PG PG +A ASP+P APQAA R+A GRA + GSDQ RP
Sbjct: 117 SRLRPAAPGPRPGCSSARASPAPAAPQAAA--RTAPGRAASGGSGPGSRGQGSDQVGARP 174
Query: 222 GPCSSAAAAGPCRRER 237
CRR R
Sbjct: 175 SRAGGQPPPLTCRRCR 190
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 43.9 bits (102), Expect = 1e-04
Identities = 46/136 (33%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 118 GTFS----GGHEGHCKPWTDCCWRCRRRPKTPEAASSPRKSGASDR--------QRRRGG 165
GTFS G E P D R RP P S P +SG+ + + G
Sbjct: 57 GTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG 116
Query: 166 WETCGCEPGRPPGPPTA-ASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQ---RP 221
PG PG +A ASP+P APQAA R+A GRA + GSDQ RP
Sbjct: 117 SRLRPAAPGPRPGCSSARASPAPAAPQAAA--RTAPGRAASGGSGPGSRGQGSDQVGARP 174
Query: 222 GPCSSAAAAGPCRRER 237
CRR R
Sbjct: 175 SRAGGQPPPLTCRRCR 190
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 43.9 bits (102), Expect = 1e-04
Identities = 46/136 (33%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 118 GTFS----GGHEGHCKPWTDCCWRCRRRPKTPEAASSPRKSGASDR--------QRRRGG 165
GTFS G E P D R RP P S P +SG+ + + G
Sbjct: 57 GTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG 116
Query: 166 WETCGCEPGRPPGPPTA-ASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQ---RP 221
PG PG +A ASP+P APQAA R+A GRA + GSDQ RP
Sbjct: 117 SRLRPAAPGPRPGCSSARASPAPAAPQAAA--RTAPGRAASGGSGPGSRGQGSDQVGARP 174
Query: 222 GPCSSAAAAGPCRRER 237
CRR R
Sbjct: 175 SRAGGQPPPLTCRRCR 190
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 43.9 bits (102), Expect = 1e-04
Identities = 46/136 (33%), Positives = 54/136 (39%), Gaps = 18/136 (13%)
Query: 118 GTFS----GGHEGHCKPWTDCCWRCRRRPKTPEAASSPRKSGASDR--------QRRRGG 165
GTFS G E P D R RP P S P +SG+ + + G
Sbjct: 57 GTFSPESAAGTEVSGAPHPDSRTRPAARPPHPRTRSPPGRSGSGTTFSAVPPRPSQHQSG 116
Query: 166 WETCGCEPGRPPGPPTA-ASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQ---RP 221
PG PG +A ASP+P APQAA R+A GRA + GSDQ RP
Sbjct: 117 SRLRPAAPGPRPGCSSARASPAPAAPQAAA--RTAPGRAASGGSGPGSRGQGSDQVGARP 174
Query: 222 GPCSSAAAAGPCRRER 237
CRR R
Sbjct: 175 SRAGGQPPPLTCRRCR 190
>gi|4507581 CD40 antigen isoform 1 precursor [Homo sapiens]
Length = 277
Score = 42.4 bits (98), Expect = 4e-04
Identities = 32/109 (29%), Positives = 40/109 (36%), Gaps = 11/109 (10%)
Query: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPG----EECCSEWDCMCVQPE-FHCGDPCCTT 88
CG L + C H + C G ++ SE D +C E +HC C +
Sbjct: 62 CGESEFLDTWNRETHC---HQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACES 118
Query: 89 C-RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCKPWTDC 134
C H C PG GV+ C C G FS C PWT C
Sbjct: 119 CVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSC 167
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 41.6 bits (96), Expect = 7e-04
Identities = 58/222 (26%), Positives = 71/222 (31%), Gaps = 51/222 (22%)
Query: 23 SLGQRPTGGPGCGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCG 82
S G+RP P R + ARC C R G P HC
Sbjct: 124 SAGKRPAAAARAAPPR----QRSLARCLPRSVGSCVRPSVGPSL----------PRRHCR 169
Query: 83 DPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEGHCKPWTDCCWRCRRRP 142
C CR P P +Q + G + +G P+ RCRRR
Sbjct: 170 RHCRCHCRRRPLPKPPPLQPR----LGSASPPRLAAPLAGSRAPSLSPFPR---RCRRRA 222
Query: 143 K-------TPEAASSPRKSGASDRQRRRGGWE------TCGCEPGRPPGPPTAASPSPGA 189
+ P S R +RRRGG E GC G PP P P A
Sbjct: 223 ERSPAGHGLPLPRSLSRGGEVVGARRRRGGEERRVRGRRQGCALGSPPIP-----AGPAA 277
Query: 190 PQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAG 231
P AG R+A ++W + GG PG A G
Sbjct: 278 PGRAGERRAA---------RQWRKRGGG---PGVSPREGAQG 307
Score = 28.5 bits (62), Expect = 5.9
Identities = 32/105 (30%), Positives = 36/105 (34%), Gaps = 17/105 (16%)
Query: 142 PKTPEAASSPRKSGASDRQRRRGGWETCGCEPGRPPG-------PPTAASPSPGAPQAAG 194
P PE A P + A G C PP PPT A GA AAG
Sbjct: 16 PGCPEVAPQPEGTDAP-------GPAVCSPTARAPPPILPAPQRPPTRAREWEGAAWAAG 68
Query: 195 ALRSALGRALLPWQQKW--VQEGGSDQRPGPCSSA-AAAGPCRRE 236
A LP ++ V + PGP A A G C RE
Sbjct: 69 ATGVGAALLALPGSRRLGRVPLTFREASPGPAPGAPRARGSCGRE 113
>gi|7657039 tumor necrosis factor receptor superfamily, member 21
precursor [Homo sapiens]
Length = 655
Score = 41.2 bits (95), Expect = 9e-04
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 71 DCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HC 128
+C C F C H CP G GV+ +G + +C CA GTFS C
Sbjct: 130 ECTCPPGMFQSNATCAP---HTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKC 186
Query: 129 KPWTDC 134
K +TDC
Sbjct: 187 KAYTDC 192
>gi|23312371 CD40 antigen isoform 2 precursor [Homo sapiens]
Length = 203
Score = 40.0 bits (92), Expect = 0.002
Identities = 35/126 (27%), Positives = 46/126 (36%), Gaps = 21/126 (16%)
Query: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPG----EECCSEWDCMCVQPE-FHCGDPCCTT 88
CG L + C H + C G ++ SE D +C E +HC C +
Sbjct: 62 CGESEFLDTWNRETHC---HQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACES 118
Query: 89 C-RHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCKPWTDCCWRCRRRPKTP 145
C H C PG GV+ C C G FS C PWT ++P
Sbjct: 119 CVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWT----------RSP 168
Query: 146 EAASSP 151
+A SP
Sbjct: 169 GSAESP 174
>gi|112421108 capicua homolog [Homo sapiens]
Length = 1608
Score = 39.3 bits (90), Expect = 0.003
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 24/103 (23%)
Query: 142 PKTPEAASSPRKSGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQAAGALRSALG 201
P + P +S A +R GG T +P RPPG SP PG P G + S G
Sbjct: 65 PVASNQSKEPAESAAVAHERPPGG--TGSADPERPPGATCPESPGPGPPHPLGVVESGKG 122
Query: 202 RALLPWQQKWVQEGGSDQRPGPCSSAAAAGP---CRRERETQS 241
P P + A+GP R + ET+S
Sbjct: 123 -------------------PPPTTEEEASGPPGEPRLDSETES 146
Score = 32.0 bits (71), Expect = 0.54
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 139 RRRPKTPEAASSPRKSGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQAAGALRS 198
R K PE +S S +SD + G E G EP PP P A + +PG G+ S
Sbjct: 1256 RTSAKGPETMASKFPSSSSDWRVPGQGLENRG-EPPTPPSPAPAPAVAPG-----GSSES 1309
Query: 199 ALGRA 203
+ GRA
Sbjct: 1310 SSGRA 1314
Score = 28.5 bits (62), Expect = 5.9
Identities = 20/77 (25%), Positives = 28/77 (36%), Gaps = 11/77 (14%)
Query: 172 EPGRPPGPPTA-----------ASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQR 220
EP PP PP A ++ SP + A+ A +LG Q+ R
Sbjct: 513 EPPGPPDPPVAFGKGYGSAPSSSASSPASSSASAATSFSLGSGTFKAQESGQGSTAGPLR 572
Query: 221 PGPCSSAAAAGPCRRER 237
P P + A P + R
Sbjct: 573 PPPPGAGGPATPSKATR 589
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 46 DARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGK 105
+AR C R CR G F C H CPPG GV + G
Sbjct: 101 EARACHATHNRACRCRTG---------------FFAHAGFCL--EHASCPPGAGVIAPGT 143
Query: 106 FSFGFQCIDCASGTFSGGHEG--HCKPWTDC 134
S QC C GTFS C+P +C
Sbjct: 144 PSQNTQCQPCPPGTFSASSSSSEQCQPHRNC 174
>gi|4507565 tumor necrosis factor receptor superfamily, member 11a
precursor [Homo sapiens]
Length = 616
Score = 38.9 bits (89), Expect = 0.004
Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 72 CMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFSGGHEG--HCK 129
C C +H C R+ C PG G Q + + C C +G FS C+
Sbjct: 112 CACTAG-YHWSQDCECCRRNTECAPGLGAQHPLQLNKDTVCKPCLAGYFSDAFSSTDKCR 170
Query: 130 PWTDCCWRCRR 140
PWT+C + +R
Sbjct: 171 PWTNCTFLGKR 181
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 38.9 bits (89), Expect = 0.004
Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 19/91 (20%)
Query: 46 DARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCGDPCCTTCRHHPCPPGQGVQSQGK 105
+AR C R CR G F C H CPPG GV + G
Sbjct: 101 EARACHATHNRACRCRTG---------------FFAHAGFCL--EHASCPPGAGVIAPGT 143
Query: 106 FSFGFQCIDCASGTFSGGHEG--HCKPWTDC 134
S QC C GTFS C+P +C
Sbjct: 144 PSQNTQCQPCPPGTFSASSSSSEQCQPHRNC 174
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 38.9 bits (89), Expect = 0.004
Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 30/116 (25%)
Query: 141 RPKTPEAASSPRK---SGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGA---PQAAG 194
RP+ P +PR S + + R G C GRP G ASP P P+ G
Sbjct: 5 RPRGPHQGGTPRPLPASAGAQGSQARSGLRLCRTTQGRPAG---GASPPPSPRSRPEGPG 61
Query: 195 ALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRERETQSWPPSSLAGP 250
R A A +RP S+ +AGP +R R P LAGP
Sbjct: 62 PPRPATPSA---------------RRPQGLSAGVSAGPAQRSR------PLQLAGP 96
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 38.9 bits (89), Expect = 0.004
Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 30/116 (25%)
Query: 141 RPKTPEAASSPRK---SGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGA---PQAAG 194
RP+ P +PR S + + R G C GRP G ASP P P+ G
Sbjct: 5 RPRGPHQGGTPRPLPASAGAQGSQARSGLRLCRTTQGRPAG---GASPPPSPRSRPEGPG 61
Query: 195 ALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGPCRRERETQSWPPSSLAGP 250
R A A +RP S+ +AGP +R R P LAGP
Sbjct: 62 PPRPATPSA---------------RRPQGLSAGVSAGPAQRSR------PLQLAGP 96
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 38.9 bits (89), Expect = 0.004
Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 7/78 (8%)
Query: 173 PGRPPGPPTAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAGP 232
PG P GPPTAA P P AA + G A P G S Q PGP ++AAA P
Sbjct: 284 PGHPAGPPTAAPAVP--PPAAAQNGGSAGAAPAPAPAAGGPAGVSGQ-PGPGAAAAAPAP 340
Query: 233 CRR----ERETQSWPPSS 246
+ +R Q+ PP++
Sbjct: 341 GVKAESPKRVVQAAPPAA 358
Score = 32.0 bits (71), Expect = 0.54
Identities = 19/68 (27%), Positives = 24/68 (35%)
Query: 138 CRRRPKTPEAASSPRKSGASDRQRRRGGWETCGCEPGRPPGPPTAASPSPGAPQAAGALR 197
C P A+ P + A + PG PGP P PG P GA +
Sbjct: 137 CAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQ 196
Query: 198 SALGRALL 205
+ G A L
Sbjct: 197 TLNGSAAL 204
Score = 28.5 bits (62), Expect = 5.9
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 173 PGRPPGPPTA--ASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAA 230
PG P PP A A P G PQ G + R L+P + RP P SA +
Sbjct: 83 PGAAPEPPPAGRARPGGGGPQRPGP--PSPRRPLVP---AGPAPPAAKLRPPPEGSAGSC 137
Query: 231 GPCRRERETQSWPPSSLAGP 250
P + P + AGP
Sbjct: 138 APVPAAAAVAAGPEPAPAGP 157
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 38.9 bits (89), Expect = 0.004
Identities = 53/224 (23%), Positives = 74/224 (33%), Gaps = 50/224 (22%)
Query: 33 GCGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWDCMCVQPEFHCGDPCCTTCRHH 92
G P + LLGT + VH+ P + W GD TC
Sbjct: 725 GSLPSQDLLGTSSATVTPAVHSDFVSGVSPHNAPSAGW----------AGDAGSRTCSPA 774
Query: 93 PCPP--GQGVQSQGKFSFGFQCIDCASGTFS-------------GGHEGHC--------- 128
P PP G S G + D + G H HC
Sbjct: 775 PIPPHTSDSCSKSGAASLGEEARDTPQPSSPLVLQVGRPEQGAVGPHRSHCCSQPGTQPA 834
Query: 129 -----KPWTDCCWRCRR--------RPKTPEAASSPRKSGASDRQRRRGGWETCGCEPGR 175
P + W C R RP +SS +G+S + RG + E R
Sbjct: 835 QEAQRGPSPEASWLCGRYCPTPPRGRPCPQRRSSSCGSTGSSHQSTARGPGGSPQ-EGTR 893
Query: 176 PPGPPTAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQ 219
PGP + P+ GA + + A + A R L ++K ++ GG Q
Sbjct: 894 QPGPTPSPGPNSGASRRSSASQGAGSRGLS--EEKTLRSGGGPQ 935
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 38.5 bits (88), Expect = 0.006
Identities = 31/111 (27%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 34 CGPGRLLLGTGTDARCCRVHTTRCCRDYPGEECCSEWD---CMCVQPEFHC----GDPCC 86
C PG + ++C + CS + C C P C GD C
Sbjct: 78 CPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVCGC-SPGHFCIVQDGDHCA 136
Query: 87 TTCRHHPCPPGQGVQSQGKFSFGFQCIDCASGTFS-GGHEGHCKPWTDCCW 136
+ PGQ VQ G S C +C GTFS G C+ T C W
Sbjct: 137 ACRAYATSSPGQRVQKGGTESQDTLCQNCPPGTFSPNGTLEECQHQTKCSW 187
Score = 29.3 bits (64), Expect = 3.5
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 12/61 (19%)
Query: 60 DYP-GEECCSEWDCMCVQPEFH----CGDPCCTTCRHHPCPPGQGVQSQGKFSFGFQCID 114
+YP G ECC + P + CG+ T C PCPPG + S QC
Sbjct: 46 EYPVGSECCPK-----CSPGYRVKEACGELTGTVCE--PCPPGTYIAHLNGLSKCLQCQM 98
Query: 115 C 115
C
Sbjct: 99 C 99
>gi|222352122 hypothetical protein LOC284297 [Homo sapiens]
Length = 1573
Score = 37.7 bits (86), Expect = 0.010
Identities = 42/141 (29%), Positives = 53/141 (37%), Gaps = 15/141 (10%)
Query: 114 DCASGTFSGGHEGHCKPWTDCCWRCRRRP--KTPEAASSPRKSGASDRQRRRGGWETCGC 171
D A GT + G GH P WR RRP +P P +G+ D + W+T
Sbjct: 892 DLAKGTTTAGVPGHTLP-----WRTTRRPGSSSPAIRRLP-DTGSKDGYKLPWTWDTPSG 945
Query: 172 EPGRPPGPPTAASPSPGAPQAAGALRSALGRALLPWQQKWVQEGGSDQRPGPCSSAAAAG 231
G G PTA P AG RS P + + GS ++P P
Sbjct: 946 R-GLAEGTPTAGKLGP--TLGAGTTRSPGS----PPTLRVHGDTGSPRKPWPERRPPRPA 998
Query: 232 PCRRERETQSWPPSSLAGPDG 252
R T S PS+ GP G
Sbjct: 999 ATRTAPPTPSPGPSASPGPPG 1019
>gi|89886484 XK, Kell blood group complex subunit-related family,
member 6 isoform b [Homo sapiens]
Length = 641
Score = 37.7 bits (86), Expect = 0.010
Identities = 26/78 (33%), Positives = 31/78 (39%), Gaps = 9/78 (11%)
Query: 118 GTFSGGHEGHCKPWTDCCWRCRRRPKTPEAASSPRKSGASDRQRRRGGWE----TCGCEP 173
G S H HC + C W CR PR+S A+D GG +
Sbjct: 49 GESSSMHICHCCNTSSCYWGCRSACLRSLLGRKPRRSAAAD-----GGDQPLQPPAAPGA 103
Query: 174 GRPPGPPTAASPSPGAPQ 191
GR P P+AA P P PQ
Sbjct: 104 GRQPPTPSAARPEPPPPQ 121
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.138 0.502
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,834,648
Number of Sequences: 37866
Number of extensions: 1038561
Number of successful extensions: 8688
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 563
Number of HSP's that attempted gapping in prelim test: 7559
Number of HSP's gapped (non-prelim): 1659
length of query: 255
length of database: 18,247,518
effective HSP length: 100
effective length of query: 155
effective length of database: 14,460,918
effective search space: 2241442290
effective search space used: 2241442290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.