Guide to the Human Genome
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Name: LOC442676 Sequence: fasta or formatted (679aa) NCBI GI: 169170016
Description:

PREDICTED: hypothetical protein LOC442676

Referenced in:

SOX Family

Other entries for this name:
alt prot [679aa] PREDICTED: hypothetical protein LOC442676
alt prot [679aa] PREDICTED: hypothetical protein LOC442676
alt mRNA [679aa] PREDICTED: hypothetical protein LOC442676
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         56           2
 C cysteine            4.1         28           1
 D aspartate           3.1         21           1
 E glutamate           5.3         36           3
 F phenylalanine       1.6         11           2
 G glycine             9.4         64           2
 H histidine           5.0         34           1
 I isoleucine          1.8         12           1
 K lysine              4.9         33           2
 L leucine             9.0         61           2
 M methionine          2.4         16           2
 N asparagine          2.9         20           1
 P proline            10.5         71           3
 Q glutamine           4.9         33           2
 R arginine            4.4         30           4
 S serine              8.4         57           3
 T threonine           5.2         35           3
 V valine              5.6         38           2
 W tryptophan          2.8         19           1
 Y tyrosine            0.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein LOC442676 
LOC442676             1.000   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.999   PREDICTED: hypothetical protein LOC442676 
LOC442676             0.997   PREDICTED: hypothetical protein LOC442676 
LOC648262             0.164   PREDICTED: similar to hCG1996386 
LOC648262             0.164   PREDICTED: similar to hCG1996386 
CIC                   0.157   capicua homolog 
LOC100289067          0.132   PREDICTED: hypothetical protein XP_002342619 
LOC100130600          0.105   PREDICTED: similar to hCG2014367 
LOC100130600          0.105   PREDICTED: similar to hCG2014367 
LOC100130600          0.105   PREDICTED: hypothetical protein LOC100130600 
LOC100130600          0.105   PREDICTED: similar to hCG2014367 
LOC648262             0.095   PREDICTED: hypothetical protein 
LOC100288667          0.094   PREDICTED: hypothetical protein XP_002344293 
LEF1                  0.018   lymphoid enhancer-binding factor 1 isoform 3 
LEF1                  0.018   lymphoid enhancer-binding factor 1 isoform 2 
TNFRSF18              0.016   tumor necrosis factor receptor superfamily, member 1...
SOX17                 0.015   SRY-box 17 
TCF7L2                0.015   transcription factor 7-like 2 isoform 2 
LEF1                  0.015   lymphoid enhancer-binding factor 1 isoform 1 
ATN1                  0.015   atrophin-1 
ATN1                  0.015   atrophin-1 
TCF7L2                0.014   transcription factor 7-like 2 isoform 1 
BBX                   0.013   HMG-BOX transcription factor BBX isoform 1 
BBX                   0.013   HMG-BOX transcription factor BBX isoform 2 
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.013   SWI/SNF-related matrix-associated actin-dependent r...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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