Guide to the Human Genome
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Name: XKR6 Sequence: fasta or formatted (641aa) NCBI GI: 89886484
Description:

XK, Kell blood group complex subunit-related family, member 6 isoform b

Referenced in:

Hematopoiesis and Erythrocytes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         47           3
 C cysteine            2.8         18           2
 D aspartate           4.1         26           2
 E glutamate           4.2         27           2
 F phenylalanine       4.5         29           2
 G glycine             9.5         61           4
 H histidine           1.7         11           1
 I isoleucine          4.5         29           2
 K lysine              2.0         13           2
 L leucine            10.6         68           2
 M methionine          3.3         21           2
 N asparagine          1.2          8           1
 P proline             7.3         47           4
 Q glutamine           3.9         25           2
 R arginine            6.9         44           2
 S serine              6.4         41           3
 T threonine           4.7         30           2
 V valine              7.2         46           3
 W tryptophan          2.8         18           1
 Y tyrosine            5.0         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   XK, Kell blood group complex subunit-related family,... 
XKR4                  0.394   XK, Kell blood group complex subunit-related family,...
XKR7                  0.381   XK, Kell blood group complex subunit-related family,...
XKR8                  0.107   XK, Kell blood group complex subunit-related family,...
XKR9                  0.087   XK, Kell blood group complex subunit-related family,...
XKR5                  0.080   XK-related protein 5a 
XK                    0.040   membrane transport protein XK 
XKRX                  0.020   XK, Kell blood group complex subunit-related, X-lin...
XKR3                  0.020   X Kell blood group precursor-related family, member...
HOXC13                0.014   homeobox C13 
ZFHX3                 0.013   AT-binding transcription factor 1 
ONECUT3               0.013   one cut homeobox 3 
GJD4                  0.012   connexin40.1 
HOXA10                0.011   homeobox A10 isoform a 
LOC100291220          0.011   PREDICTED: hypothetical protein XP_002347633 
LOC100289232          0.011   PREDICTED: hypothetical protein XP_002343935 
LOC100287224          0.011   PREDICTED: hypothetical protein XP_002343483 
ZFPM1                 0.011   zinc finger protein, multitype 1 
POU3F3                0.011   POU class 3 homeobox 3 
HOXB3                 0.011   homeobox B3 
PRB2                  0.011   proline-rich protein BstNI subfamily 2 
ZIC2                  0.010   zinc finger protein of the cerebellum 2 
TNFRSF18              0.010   tumor necrosis factor receptor superfamily, member 1...
BCL9L                 0.010   B-cell CLL/lymphoma 9-like 
LOC100293975          0.009   PREDICTED: hypothetical protein 
LOC100290812          0.009   PREDICTED: hypothetical protein XP_002347678 
LOC100288205          0.009   PREDICTED: hypothetical protein XP_002343496 
PRB1                  0.009   proline-rich protein BstNI subfamily 1 isoform 1 pre...
MAP3K12               0.009   mitogen-activated protein kinase kinase kinase 12 [H...
CDRT15L1              0.009   PREDICTED: CMT1A duplicated region transcript 15-li...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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