Guide to the Human Genome
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Name: LOC100287232 Sequence: fasta or formatted (384aa) NCBI GI: 239743279
Description:

PREDICTED: hypothetical protein XP_002342816

Not currently referenced in the text

Other entries for this name:
alt mRNA {384aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         40           3
 C cysteine            2.9         11           1
 D aspartate           1.0          4           1
 E glutamate           1.6          6           2
 F phenylalanine       3.4         13           1
 G glycine            14.1         54           3
 H histidine           2.1          8           1
 I isoleucine          1.0          4           3
 K lysine              2.1          8           1
 L leucine             5.7         22           4
 M methionine          0.5          2           1
 N asparagine          0.5          2           1
 P proline            14.3         55           3
 Q glutamine           2.9         11           1
 R arginine           13.5         52           3
 S serine             13.5         52           3
 T threonine           5.5         21           2
 V valine              2.6         10           2
 W tryptophan          1.3          5           1
 Y tyrosine            1.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342816 
LOC100291634          1.000   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          1.000   PREDICTED: hypothetical protein 
LOC100291096          0.517   PREDICTED: hypothetical protein XP_002346952 
FLJ37078              0.054   hypothetical protein LOC222183 
LOC100127891          0.041   PREDICTED: hypothetical protein 
LOC643355             0.041   PREDICTED: hypothetical protein 
SFPQ                  0.041   splicing factor proline/glutamine rich (polypyrimidin...
NACA                  0.041   nascent polypeptide-associated complex alpha subuni...
BAT2                  0.040   HLA-B associated transcript-2 
LOC100131455          0.038   PREDICTED: hypothetical protein 
LOC100131455          0.038   PREDICTED: hypothetical protein 
BBC3                  0.038   BCL2 binding component 3 isoform 1 
LOC100127891          0.037   PREDICTED: similar to hCG2042508 
LOC100127891          0.037   PREDICTED: similar to hCG2042508 
LOC100127891          0.037   PREDICTED: similar to hCG2042508 
TAF4                  0.037   TBP-associated factor 4 
LOC100128370          0.037   PREDICTED: hypothetical protein 
LOC100128370          0.037   PREDICTED: hypothetical protein 
SHANK1                0.036   SH3 and multiple ankyrin repeat domains 1 
COL2A1                0.036   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.036   collagen, type II, alpha 1 isoform 2 precursor [Hom...
LOC100291061          0.036   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.036   PREDICTED: hypothetical protein XP_002343855 
LOC100131455          0.036   PREDICTED: hypothetical protein 
FLJ31945              0.035   PREDICTED: hypothetical protein 
COL1A1                0.035   alpha 1 type I collagen preproprotein 
LOC643355             0.035   PREDICTED: hypothetical protein 
LOC643355             0.035   PREDICTED: hypothetical protein 
CXorf67               0.035   hypothetical protein LOC340602 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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