Guide to the Human Genome
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Name: LOC643355 Sequence: fasta or formatted (426aa) NCBI GI: 169160903
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {520aa} PREDICTED: hypothetical protein
alt prot {520aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.4         57           4
 C cysteine            2.8         12           1
 D aspartate           0.7          3           1
 E glutamate           4.7         20           2
 F phenylalanine       0.9          4           1
 G glycine            12.0         51           3
 H histidine           1.9          8           1
 I isoleucine          0.7          3           1
 K lysine              0.9          4           1
 L leucine             5.6         24           2
 M methionine          0.2          1           1
 N asparagine          0.7          3           1
 P proline            17.4         74           3
 Q glutamine           2.1          9           1
 R arginine           16.7         71           4
 S serine              9.9         42           2
 T threonine           3.5         15           1
 V valine              3.8         16           2
 W tryptophan          1.2          5           1
 Y tyrosine            0.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC643355             0.563   PREDICTED: hypothetical protein 
LOC643355             0.563   PREDICTED: hypothetical protein 
SAMD1                 0.052   sterile alpha motif domain containing 1 
FLJ22184              0.047   PREDICTED: hypothetical protein LOC80164 
TAF4                  0.047   TBP-associated factor 4 
NACA                  0.046   nascent polypeptide-associated complex alpha subuni...
LOC100291624          0.045   PREDICTED: hypothetical protein XP_002345876 
LOC100289712          0.045   PREDICTED: hypothetical protein XP_002346761 
LOC100287455          0.045   PREDICTED: hypothetical protein XP_002342583 
SRRM1                 0.044   serine/arginine repetitive matrix 1 
LOC388279             0.043   PREDICTED: hypothetical protein 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
LOC645602             0.040   PREDICTED: hypothetical protein 
LOC645602             0.040   PREDICTED: hypothetical protein 
LOC645602             0.040   PREDICTED: hypothetical protein 
LOC100292122          0.039   PREDICTED: hypothetical protein XP_002345138 
LOC100286986          0.039   PREDICTED: hypothetical protein XP_002344191 
DACT3                 0.039   thymus expressed gene 3-like 
FLJ37078              0.038   hypothetical protein LOC222183 
LOC100291634          0.037   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.037   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.037   PREDICTED: hypothetical protein 
SRRM2                 0.037   splicing coactivator subunit SRm300 
LMTK3                 0.037   lemur tyrosine kinase 3 
SCAF1                 0.037   SR-related CTD-associated factor 1 
FLJ22184              0.036   PREDICTED: hypothetical protein FLJ22184 
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.036   WAS/WASL interacting protein family, member 1 
LOC100129571          0.035   PREDICTED: similar to hCG1646049 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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