Guide to the Human Genome
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Name: TUT1 Sequence: fasta or formatted (912aa) NCBI GI: 226371750
Description:

terminal uridylyl transferase 1, U6 snRNA-specific

Referenced in:

RNA-binding Proteins
Capping and Splicing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         87           3
 C cysteine            2.6         24           2
 D aspartate           4.5         41           1
 E glutamate           7.1         65           2
 F phenylalanine       3.2         29           2
 G glycine             9.0         82           3
 H histidine           2.3         21           2
 I isoleucine          1.2         11           1
 K lysine              2.9         26           1
 L leucine            12.1        110           2
 M methionine          1.2         11           1
 N asparagine          1.4         13           1
 P proline             7.6         69           2
 Q glutamine           5.8         53           3
 R arginine            7.5         68           3
 S serine              9.6         88           3
 T threonine           3.4         31           2
 V valine              6.7         61           2
 W tryptophan          1.5         14           2
 Y tyrosine            0.9          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   terminal uridylyl transferase 1, U6 snRNA-specific ... 
MTPAP                 0.075   PAP associated domain containing 1 
ZCCHC11               0.049   zinc finger, CCHC domain containing 11 isoform a [Ho...
ZCCHC11               0.049   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.049   zinc finger, CCHC domain containing 11 isoform c [Ho...
ZCCHC6                0.046   zinc finger, CCHC domain containing 6 
PAPD4                 0.026   PAP associated domain containing 4 
PAPD4                 0.026   PAP associated domain containing 4 
PAPD4                 0.026   PAP associated domain containing 4 
HNRNPA1               0.014   heterogeneous nuclear ribonucleoprotein A1 isoform b...
HNRNPA1               0.014   heterogeneous nuclear ribonucleoprotein A1 isoform a ...
C2orf55               0.014   hypothetical protein LOC343990 
LOC653548             0.013   PREDICTED: double homeobox, 4-like 
DUX4                  0.013   double homeobox, 4 
LOC728410             0.013   double homeobox, 4-like 
LOC653543             0.013   double homeobox, 4-like 
LOC653545             0.013   double homeobox, 4-like 
LOC653544             0.013   double homeobox, 4-like 
LOC440017             0.013   PREDICTED: similar to double homeobox, 4 
LOC728022             0.013   PREDICTED: similar to double homeobox, 4 
LOC100289581          0.013   PREDICTED: hypothetical protein XP_002343082 
LOC440014             0.013   PREDICTED: similar to double homeobox, 4 
LOC399839             0.013   PREDICTED: similar to double homeobox, 4 
LOC440013             0.013   PREDICTED: similar to double homeobox, 4 
HNRNPA1L2             0.012   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
HNRNPA1L2             0.012   heterogeneous nuclear ribonucleoprotein A1-like [Hom...
LOC441056             0.012   PREDICTED: double homeobox, 4-like 
MLL2                  0.011   myeloid/lymphoid or mixed-lineage leukemia 2 
FLJ22184              0.010   PREDICTED: hypothetical protein FLJ22184 
HNRNPA3               0.010   heterogeneous nuclear ribonucleoprotein A3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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