Guide to the Human Genome
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Name: IRX2 Sequence: fasta or formatted (471aa) NCBI GI: 39930475
Description:

iroquois homeobox 2

Referenced in:

Homeobox and Related Proteins

Other entries for this name:
alt mRNA [471aa] iroquois homeobox 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.9         70           6
 C cysteine            1.5          7           1
 D aspartate           5.5         26           3
 E glutamate           6.4         30           2
 F phenylalanine       1.3          6           1
 G glycine            10.2         48           3
 H histidine           1.7          8           1
 I isoleucine          1.3          6           2
 K lysine              5.1         24           2
 L leucine             7.9         37           2
 M methionine          1.3          6           1
 N asparagine          2.5         12           1
 P proline            11.0         52           3
 Q glutamine           2.5         12           1
 R arginine            3.8         18           3
 S serine              9.6         45           2
 T threonine           5.9         28           2
 V valine              1.3          6           2
 W tryptophan          0.8          4           1
 Y tyrosine            5.5         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   iroquois homeobox 2 
IRX2                  1.000   iroquois homeobox 2 
IRX5                  0.366   iroquois homeobox protein 5 
IRX3                  0.205   iroquois homeobox 3 
IRX1                  0.190   iroquois homeobox protein 1 
IRX4                  0.167   iroquois homeobox 4 
IRX6                  0.160   iroquois homeobox protein 6 
MKX                   0.062   mohawk homeobox 
PKNOX2                0.037   PBX/knotted 1 homeobox 2 
SIX5                  0.036   sine oculis homeobox homolog 5 
PKNOX1                0.035   PBX/knotted 1 homeobox 1 
TGIF1                 0.032   TG-interacting factor isoform a 
TGIF1                 0.032   TG-interacting factor isoform c 
TGIF1                 0.032   TG-interacting factor isoform d 
TGIF1                 0.032   TG-interacting factor isoform d 
TGIF1                 0.032   TG-interacting factor isoform d 
TGIF1                 0.032   TG-interacting factor isoform d 
TGIF1                 0.032   TG-interacting factor isoform c 
TGIF1                 0.032   TG-interacting factor isoform b 
WBP11                 0.031   WW domain binding protein 11 
MEIS1                 0.031   Meis homeobox 1 
MEIS3                 0.031   Meis1, myeloid ecotropic viral integration site 1 ho...
TGIF2                 0.030   TGFB-induced factor homeobox 2 
SETD1A                0.030   SET domain containing 1A 
MEIS2                 0.030   Meis homeobox 2 isoform h 
MEIS2                 0.030   Meis homeobox 2 isoform g 
MEIS2                 0.030   Meis homeobox 2 isoform a 
MEIS2                 0.030   Meis homeobox 2 isoform d 
MEIS2                 0.030   Meis homeobox 2 isoform c 
MEIS2                 0.030   Meis homeobox 2 isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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