SF3B1 32476

Name: SF3B1	Sequence: fasta or formatted (1304aa)		NCBI GI: 54112117
Description: splicing factor 3b, subunit 1 isoform 1		Referenced in: Capping and Splicing
Other entries for this name: alt prot [144aa] splicing factor 3b, subunit 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 8.5 111 3 C cysteine 1.0 13 2 D aspartate 6.0 78 5 E glutamate 7.0 91 2 F phenylalanine 2.1 27 2 G glycine 6.8 89 2 H histidine 2.5 32 1 I isoleucine 6.4 84 2 K lysine 6.4 84 2 L leucine 9.3 121 3 M methionine 3.1 40 1 N asparagine 2.9 38 2 P proline 6.5 85 3 Q glutamine 4.0 52 2 R arginine 6.1 79 2 S serine 4.5 59 3 T threonine 6.3 82 2 V valine 5.8 76 2 W tryptophan 1.2 16 1 Y tyrosine 3.6 47 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 splicing factor 3b, subunit 1 isoform 1 SF3B1 0.099 splicing factor 3b, subunit 1 isoform 2 NACA 0.010 nascent polypeptide-associated complex alpha subuni... PPP2R1B 0.010 beta isoform of regulatory subunit A, protein phosph... PPP2R1B 0.010 beta isoform of regulatory subunit A, protein phosph... PPP2R1A 0.010 alpha isoform of regulatory subunit A, protein phosp... OGFR 0.010 opioid growth factor receptor LOC100134147 0.009 PREDICTED: hypothetical protein LOC100294420 0.009 PREDICTED: similar to mucin 2 MUC2 0.009 mucin 2 precursor C6orf132 0.009 PREDICTED: chromosome 6 open reading frame 132 [Hom... C6orf132 0.009 PREDICTED: chromosome 6 open reading frame 132 [Hom... C6orf132 0.009 PREDICTED: hypothetical protein LOC647024 SRCAP 0.008 Snf2-related CBP activator protein LOC100128719 0.008 PREDICTED: hypothetical protein, partial LOC100128719 0.008 PREDICTED: hypothetical protein, partial MUPCDH 0.008 mucin and cadherin-like isoform 1 MUC4 0.008 mucin 4 isoform a LOC728317 0.008 PREDICTED: hypothetical protein RP1L1 0.008 retinitis pigmentosa 1-like 1 ZNF469 0.007 zinc finger protein 469 FLJ22184 0.007 PREDICTED: hypothetical protein FLJ22184 EPN1 0.007 epsin 1 isoform c ANKRD33B 0.007 PREDICTED: ankyrin repeat domain 33B MUC5B 0.007 mucin 5, subtype B, tracheobronchial SLC38A10 0.007 solute carrier family 38, member 10 isoform b MUC7 0.007 mucin 7, secreted precursor MUC7 0.007 mucin 7, secreted precursor MUC7 0.007 mucin 7, secreted precursor BASP1 0.007 brain abundant, membrane attached signal protein 1 [... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.