Guide to the Human Genome
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Name: CHST2 Sequence: fasta or formatted (530aa) NCBI GI: 27369497
Description:

carbohydrate (N-acetylglucosamine-6-O) sulfotransferase 2

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.9         63           4
 C cysteine            1.9         10           1
 D aspartate           3.8         20           2
 E glutamate           3.8         20           3
 F phenylalanine       3.2         17           2
 G glycine             8.5         45           2
 H histidine           1.7          9           1
 I isoleucine          1.3          7           1
 K lysine              4.3         23           2
 L leucine            11.5         61           3
 M methionine          2.1         11           1
 N asparagine          2.3         12           1
 P proline             9.1         48           3
 Q glutamine           4.0         21           2
 R arginine            8.9         47           2
 S serine              5.5         29           3
 T threonine           3.4         18           2
 V valine              8.3         44           2
 W tryptophan          1.7          9           1
 Y tyrosine            3.0         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   carbohydrate (N-acetylglucosamine-6-O) sulfotransfer... 
CHST7                 0.307   chondroitin 6-sulfotransferase 7 
CHST5                 0.210   carbohydrate (N-acetylglucosamine 6-O) sulfotransfer...
CHST6                 0.210   carbohydrate (N-acetylglucosamine 6-O) sulfotransfer...
CHST4                 0.189   carbohydrate (N-acetylglucosamine 6-O) sulfotransfera...
CHST1                 0.149   carbohydrate (keratan sulfate Gal-6) sulfotransferase...
CHST3                 0.130   chondroitin 6-sulfotransferase 3 
DSEL                  0.021   dermatan sulfate epimerase-like 
COL1A1                0.015   alpha 1 type I collagen preproprotein 
COL5A2                0.015   alpha 2 type V collagen preproprotein 
DTX1                  0.014   deltex homolog 1 
FOXI3                 0.014   forkhead box I3 
HNRNPR                0.014   heterogeneous nuclear ribonucleoprotein R isoform 3...
HNRNPR                0.014   heterogeneous nuclear ribonucleoprotein R isoform 1...
HNRNPR                0.014   heterogeneous nuclear ribonucleoprotein R isoform 4...
HNRNPR                0.014   heterogeneous nuclear ribonucleoprotein R isoform 2 [...
GATA6                 0.014   GATA binding protein 6 
COL2A1                0.013   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.013   collagen, type II, alpha 1 isoform 2 precursor [Hom...
TAF4                  0.013   TBP-associated factor 4 
C6orf174              0.013   hypothetical protein LOC387104 
WBP11                 0.013   WW domain binding protein 11 
VASP                  0.012   vasodilator-stimulated phosphoprotein 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.012   PREDICTED: hypothetical protein FLJ22184 
TFAP2E                0.012   transcription factor AP-2 epsilon (activating enhan...
FOXD1                 0.011   forkhead box D1 
ZSWIM5                0.011   zinc finger, SWIM domain containing 5 
EMID1                 0.011   EMI domain containing 1 
NRG1                  0.011   neuregulin 1 isoform GGF2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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