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Search of human proteins with 23200025
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|23200025 tumor necrosis factor receptor superfamily, member
25 isoform 4 precursor [Homo sapiens]
(372 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|23200025 tumor necrosis factor receptor superfamily, member 2... 793 0.0
gi|4507569 tumor necrosis factor receptor superfamily, member 25... 772 0.0
gi|23200021 tumor necrosis factor receptor superfamily, member 2... 720 0.0
gi|23200023 tumor necrosis factor receptor superfamily, member 2... 673 0.0
gi|23200031 tumor necrosis factor receptor superfamily, member 2... 376 e-104
gi|89142745 tumor necrosis factor receptor superfamily, member 2... 282 4e-76
gi|4507575 tumor necrosis factor receptor 1 precursor [Homo sapi... 96 7e-20
gi|224494019 tumor necrosis factor receptor superfamily, member ... 55 1e-07
gi|224494026 tumor necrosis factor receptor superfamily, member ... 47 3e-05
gi|23238204 tumor necrosis factor receptor superfamily, member 1... 44 2e-04
gi|23238202 tumor necrosis factor receptor superfamily, member 1... 44 2e-04
gi|21361086 tumor necrosis factor receptor superfamily, member 1... 44 3e-04
gi|23200041 tumor necrosis factor receptor superfamily, member 1... 42 7e-04
gi|14192943 multiple EGF-like-domains 10 [Homo sapiens] 42 9e-04
gi|56676397 ankyrin repeat domain 11 [Homo sapiens] 41 0.002
gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo... 40 0.003
gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens] 39 0.006
gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens] 39 0.006
gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens] 39 0.006
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 39 0.006
gi|119703755 laminin, beta 2 precursor [Homo sapiens] 39 0.008
gi|4507579 tumor necrosis factor receptor superfamily, member 4 ... 39 0.008
gi|145309326 laminin, gamma 1 precursor [Homo sapiens] 39 0.010
gi|181336739 multiple EGF-like-domains 11 [Homo sapiens] 39 0.010
gi|219842266 usherin isoform B [Homo sapiens] 38 0.013
gi|219842259 usherin isoform A [Homo sapiens] 38 0.013
gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo s... 38 0.013
gi|33598931 scavenger receptor class F, member 1 isoform 3 precu... 38 0.017
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu... 38 0.017
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec... 38 0.017
>gi|23200025 tumor necrosis factor receptor superfamily, member 25
isoform 4 precursor [Homo sapiens]
Length = 372
Score = 793 bits (2049), Expect = 0.0
Identities = 372/372 (100%), Positives = 372/372 (100%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAASQVALE 60
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAASQVALE
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAASQVALE 60
Query: 61 NCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTC 120
NCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTC
Sbjct: 61 NCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTC 120
Query: 121 LPGFYEHGDGCVSCPTSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYR 180
LPGFYEHGDGCVSCPTSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYR
Sbjct: 121 LPGFYEHGDGCVSCPTSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYR 180
Query: 181 HCWPHKPLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGY 240
HCWPHKPLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGY
Sbjct: 181 HCWPHKPLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGY 240
Query: 241 PETQEALCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPAR 300
PETQEALCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPAR
Sbjct: 241 PETQEALCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPAR 300
Query: 301 RWKEFVRTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGC 360
RWKEFVRTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGC
Sbjct: 301 RWKEFVRTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGC 360
Query: 361 VEDLRSRLQRGP 372
VEDLRSRLQRGP
Sbjct: 361 VEDLRSRLQRGP 372
>gi|4507569 tumor necrosis factor receptor superfamily, member 25
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 772 bits (1993), Expect = 0.0
Identities = 372/417 (89%), Positives = 372/417 (89%), Gaps = 45/417 (10%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA------- 53
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 54 --------------------------------------ASQVALENCSAVADTRCGCKPG 75
ASQVALENCSAVADTRCGCKPG
Sbjct: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
Query: 76 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 135
WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
Sbjct: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
Query: 136 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG 195
TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG
Sbjct: 181 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG 240
Query: 196 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 255
MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
Sbjct: 241 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 300
Query: 256 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 315
DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
Sbjct: 301 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 360
Query: 316 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 372
IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
Sbjct: 361 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 417
>gi|23200021 tumor necrosis factor receptor superfamily, member 25
isoform 1 precursor [Homo sapiens]
Length = 426
Score = 720 bits (1859), Expect = 0.0
Identities = 358/426 (84%), Positives = 361/426 (84%), Gaps = 54/426 (12%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA------- 53
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 54 --------------------------------------ASQVALENCSAVADTRCGCKPG 75
ASQVALENCSAVADTRCGCKPG
Sbjct: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
Query: 76 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 135
WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
Sbjct: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
Query: 136 TS--TLGSCPERCA------AVCGWRQ-MFWVQVLLAGLVVPLLLGATLTYTYRHCWPHK 186
T +L P +V G R +FWVQVLLAGLVVPLLLGATLTYTYRHCWPHK
Sbjct: 181 TPPPSLAGAPWGAVQSAVPLSVAGGRVGVFWVQVLLAGLVVPLLLGATLTYTYRHCWPHK 240
Query: 187 PLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA 246
PLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA
Sbjct: 241 PLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEA 300
Query: 247 LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV 306
LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV
Sbjct: 301 LCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFV 360
Query: 307 RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS 366
RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS
Sbjct: 361 RTLGLREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRS 420
Query: 367 RLQRGP 372
RLQRGP
Sbjct: 421 RLQRGP 426
>gi|23200023 tumor necrosis factor receptor superfamily, member 25
isoform 3 precursor [Homo sapiens]
Length = 380
Score = 673 bits (1736), Expect = 0.0
Identities = 334/417 (80%), Positives = 335/417 (80%), Gaps = 82/417 (19%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA------- 53
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 54 --------------------------------------ASQVALENCSAVADTRCGCKPG 75
ASQVALENCSAVADTRCGCKPG
Sbjct: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
Query: 76 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 135
WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
Sbjct: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
Query: 136 TSTLGSCPERCAAVCGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG 195
TSTLGSCPERCAAVCGWRQ +EAG
Sbjct: 181 TSTLGSCPERCAAVCGWRQ-------------------------------------NEAG 203
Query: 196 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 255
MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW
Sbjct: 204 MEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSW 263
Query: 256 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 315
DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE
Sbjct: 264 DQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLGLREAE 323
Query: 316 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 372
IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP
Sbjct: 324 IEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQRGP 380
>gi|23200031 tumor necrosis factor receptor superfamily, member 25
isoform 7 precursor [Homo sapiens]
Length = 234
Score = 376 bits (966), Expect = e-104
Identities = 182/182 (100%), Positives = 182/182 (100%)
Query: 191 ADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQ 250
ADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQ
Sbjct: 53 ADEAGMEALTPPPATHLSPLDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQ 112
Query: 251 VTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLG 310
VTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLG
Sbjct: 113 VTWSWDQLPSRALGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMDAVPARRWKEFVRTLG 172
Query: 311 LREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQR 370
LREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQR
Sbjct: 173 LREAEIEAVEVEIGRFRDQQYEMLKRWRQQQPAGLGAVYAALERMGLDGCVEDLRSRLQR 232
Query: 371 GP 372
GP
Sbjct: 233 GP 234
Score = 116 bits (290), Expect = 4e-26
Identities = 53/53 (100%), Positives = 53/53 (100%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA 53
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA 53
>gi|89142745 tumor necrosis factor receptor superfamily, member 25
isoform 12 precursor [Homo sapiens]
Length = 181
Score = 282 bits (721), Expect = 4e-76
Identities = 136/181 (75%), Positives = 136/181 (75%), Gaps = 45/181 (24%)
Query: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA------- 53
MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPA
Sbjct: 1 MEQRPRGCAAVAAALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAGHYLKAP 60
Query: 54 --------------------------------------ASQVALENCSAVADTRCGCKPG 75
ASQVALENCSAVADTRCGCKPG
Sbjct: 61 CTEPCGNSTCLVCPQDTFLAWENHHNSECARCQACDEQASQVALENCSAVADTRCGCKPG 120
Query: 76 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 135
WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP
Sbjct: 121 WFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCP 180
Query: 136 T 136
T
Sbjct: 181 T 181
>gi|4507575 tumor necrosis factor receptor 1 precursor [Homo
sapiens]
Length = 455
Score = 95.5 bits (236), Expect = 7e-20
Identities = 100/359 (27%), Positives = 139/359 (38%), Gaps = 34/359 (9%)
Query: 36 AGDFHKKIGLFCCRGCPAASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQP 95
A + H + L C + QV + +C+ DT CGC+ Q S + F C
Sbjct: 91 ASENHLRHCLSCSKCRKEMGQVEISSCTVDRDTVCGCRKN-----QYRHYWSENLFQCFN 145
Query: 96 CLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCPTSTLG-SCPERCAA----VC 150
C C L+ L C + TC GF+ + CVSC C + C V
Sbjct: 146 CSLC--LNGTVHLSCQEKQNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQIENVK 203
Query: 151 GWRQ----MFWVQVLLAGLVVPLLLGATLTYTYRH---------CWPHKPLVTADEAGME 197
G + V+ GL + LL L Y Y+ C P + G
Sbjct: 204 GTEDSGTTVLLPLVIFFGLCLLSLLFIGLMYRYQRWKSKLYSIVCGKSTPEKEGELEGTT 263
Query: 198 ALTPPPATHLSPLDS-AHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSWD 256
P SP TL P S + P + + + P + D
Sbjct: 264 TKPLAPNPSFSPTPGFTPTLGFSPVPSSTFTSSSTYTPGDCPNFAAPRREVAPPYQGA-D 322
Query: 257 QLPSRALG--PAAAPTLSPESPAGSPAMMLQPGPQ-LYDVMDAVPARRWKEFVRTLGLRE 313
+ + AL P P E A P + P LY V++ VP RWKEFVR LGL +
Sbjct: 323 PILATALASDPIPNPLQKWEDSAHKPQSLDTDDPATLYAVVENVPPLRWKEFVRRLGLSD 382
Query: 314 AEIEAVEVEIGR-FRDQQYEMLKRWRQQQP---AGLGAVYAALERMGLDGCVEDLRSRL 368
EI+ +E++ GR R+ QY ML WR++ P A L + L M L GC+ED+ L
Sbjct: 383 HEIDRLELQNGRCLREAQYSMLATWRRRTPRREATLELLGRVLRDMDLLGCLEDIEEAL 441
>gi|224494019 tumor necrosis factor receptor superfamily, member 10b
isoform 1 precursor [Homo sapiens]
Length = 440
Score = 54.7 bits (130), Expect = 1e-07
Identities = 80/330 (24%), Positives = 126/330 (38%), Gaps = 48/330 (14%)
Query: 45 LFC--CRGCPAASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGAL 102
LFC C C + +V L C+ +T C C+ G F E SP C+ C
Sbjct: 111 LFCLRCTRCDSG-EVELSPCTTTRNTVCQCEEGTFRE-------EDSPEMCRKC------ 156
Query: 103 HRHTRLLCSRRDTDCGTCLPG------FYEHG---DGCVSCPTSTLGSCPERCAAVCGWR 153
R C R G C P E G G V T+ S P A+ C
Sbjct: 157 ----RTGCPRGMVKVGDCTPWSDIECVHKESGTKHSGEVPAVEETVTSSPGTPASPCSLS 212
Query: 154 QMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTADEAG----MEALTPPPATHLSP 209
+ + V +A +V+ + + + ++ P+ + + G ++ + P +
Sbjct: 213 GII-IGVTVAAVVLIVAVFVCKSLLWKKVLPYLKGICSGGGGDPERVDRSSQRPGAEDNV 271
Query: 210 LDSAHTLLAPPDSSEKICTVQLVGNSWTPGYPETQEALCPQVTWSWDQLPSRALGPAAAP 269
L+ ++L P E+ VQ P P L P + + P+ A
Sbjct: 272 LNEIVSILQPTQVPEQEMEVQ------EPAEPTGVNMLSPGESEHLLE-PAEAERSQRRR 324
Query: 270 TLSPESPAGSPAMMLQPGPQLYD-VMDAVPARRWKEFVRTLGLREAEIEAVEVEIGRFRD 328
L P + G P L+ Q +D D VP W+ +R LGL + EI+ + E RD
Sbjct: 325 LLVPANE-GDPTETLR---QCFDDFADLVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRD 380
Query: 329 QQYEMLKRW--RQQQPAGLGAVYAALERMG 356
Y ML +W + + A + + ALE +G
Sbjct: 381 TLYTMLIKWVNKTGRDASVHTLLDALETLG 410
>gi|224494026 tumor necrosis factor receptor superfamily, member 10b
isoform 2 precursor [Homo sapiens]
Length = 411
Score = 47.0 bits (110), Expect = 3e-05
Identities = 75/317 (23%), Positives = 112/317 (35%), Gaps = 51/317 (16%)
Query: 45 LFC--CRGCPAASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGAL 102
LFC C C + +V L C+ +T C C+ G F E SP C+ C
Sbjct: 111 LFCLRCTRCDSG-EVELSPCTTTRNTVCQCEEGTFRE-------EDSPEMCRKC------ 156
Query: 103 HRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCPTSTLGSCPERCAAVCGWRQMFWVQVLL 162
R C R G C P S + + + G V ++
Sbjct: 157 ----RTGCPRGMVKVGDCTPW-------------SDIECVHKESGIIIGVTVAAVVLIVA 199
Query: 163 AGLVVPLLLGATLTYTYRHCWPHKPLVTADEAGMEALTPPPATHLSPLDSAHTLLAPPDS 222
+ LL L Y C D ++ + P + L+ ++L P
Sbjct: 200 VFVCKSLLWKKVLPYLKGICSGGG----GDPERVDRSSQRPGAEDNVLNEIVSILQPTQV 255
Query: 223 SEKICTVQLVGNSWTPGYPETQEALCPQVTWSWDQLPSRALGPAAAPTLSPESPAGSPAM 282
E+ VQ P P L P + + P+ A L P + G P
Sbjct: 256 PEQEMEVQ------EPAEPTGVNMLSPGESEHLLE-PAEAERSQRRRLLVPANE-GDPTE 307
Query: 283 MLQPGPQLYD-VMDAVPARRWKEFVRTLGLREAEIEAVEVEIGRFRDQQYEMLKRW--RQ 339
L+ Q +D D VP W+ +R LGL + EI+ + E RD Y ML +W +
Sbjct: 308 TLR---QCFDDFADLVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIKWVNKT 364
Query: 340 QQPAGLGAVYAALERMG 356
+ A + + ALE +G
Sbjct: 365 GRDASVHTLLDALETLG 381
>gi|23238204 tumor necrosis factor receptor superfamily, member 19
isoform 2 precursor [Homo sapiens]
Length = 417
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 93 CQPCLDCGALHRHTRLLCS-RRDTDCGTCLPGFY 125
C+PCLDC ++R + CS D CG CLPGFY
Sbjct: 89 CKPCLDCAVVNRFQKANCSATSDAICGDCLPGFY 122
Score = 33.5 bits (75), Expect = 0.32
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 48 CRGCPAASQVALENCSAVADTRCG-CKPGWFVECQVSQCVSSSPFYCQPCLD 98
C C ++ NCSA +D CG C PG++ + ++ V C PC D
Sbjct: 92 CLDCAVVNRFQKANCSATSDAICGDCLPGFY---RKTKLVGFQDMECVPCGD 140
>gi|23238202 tumor necrosis factor receptor superfamily, member 19
isoform 1 precursor [Homo sapiens]
Length = 423
Score = 44.3 bits (103), Expect = 2e-04
Identities = 18/34 (52%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 93 CQPCLDCGALHRHTRLLCS-RRDTDCGTCLPGFY 125
C+PCLDC ++R + CS D CG CLPGFY
Sbjct: 89 CKPCLDCAVVNRFQKANCSATSDAICGDCLPGFY 122
Score = 33.5 bits (75), Expect = 0.32
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 48 CRGCPAASQVALENCSAVADTRCG-CKPGWFVECQVSQCVSSSPFYCQPCLD 98
C C ++ NCSA +D CG C PG++ + ++ V C PC D
Sbjct: 92 CLDCAVVNRFQKANCSATSDAICGDCLPGFY---RKTKLVGFQDMECVPCGD 140
>gi|21361086 tumor necrosis factor receptor superfamily, member 10a
[Homo sapiens]
Length = 468
Score = 43.5 bits (101), Expect = 3e-04
Identities = 81/302 (26%), Positives = 109/302 (36%), Gaps = 57/302 (18%)
Query: 87 SSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCPTSTLGSCPERC 146
S++ F C PC C + + R+T C C PG + + + C + G CP
Sbjct: 158 SNNLFACLPCTACKSDEEERSPCTTTRNTAC-QCKPGTFRNDNSAEMCRKCSRG-CPRGM 215
Query: 147 AAV---------------CGWRQMFWVQVLLAGLVVPLLLGATLTYTYRHCWPHKPLVTA 191
V G WV +L+ LVVPLLL A L C
Sbjct: 216 VKVKDCTPWSDIECVHKESGNGHNIWV-ILVVTLVVPLLLVAVLIV----CCCIGSGCGG 270
Query: 192 DEAGME--------ALTPPPATHLSPLDSAHT-LLAPPDSSEKICTVQLVGNSWTPGYPE 242
D M+ L P A D+AH +L+ DS + Q + E
Sbjct: 271 DPKCMDRVCFWRLGLLRGPGAE-----DNAHNEILSNADSLSTFVSEQQM---------E 316
Query: 243 TQEALCPQVTWSWDQLPSRA---LGPAAAPTLSPESPAGSPAMMLQPGPQLYDVMD---- 295
+QE +T Q P A LGPA A S PA P L D
Sbjct: 317 SQEP--ADLTGVTVQSPGEAQCLLGPAEAEG-SQRRRLLVPANGADPTETLMLFFDKFAN 373
Query: 296 AVPARRWKEFVRTLGLREAEIEAVEVEIGRFRDQQYEMLKRW--RQQQPAGLGAVYAALE 353
VP W + +R L L + EI+ V D Y ML +W + + A + + ALE
Sbjct: 374 IVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLMKWVNKTGRNASIHTLLDALE 433
Query: 354 RM 355
RM
Sbjct: 434 RM 435
>gi|23200041 tumor necrosis factor receptor superfamily, member 14
precursor [Homo sapiens]
Length = 283
Score = 42.4 bits (98), Expect = 7e-04
Identities = 37/139 (26%), Positives = 53/139 (38%), Gaps = 26/139 (18%)
Query: 48 CRGC-PAASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHT 106
C+ C PA A NCS + CGC PG F C+ +C C
Sbjct: 96 CQMCDPAMGLRASRNCSRTENAVCGCSPGHF-------CIVQDGDHCAACRAYATSSPGQ 148
Query: 107 RLL---CSRRDTDCGTCLPGFYEHGDGCVSCPTSTLGSCPE--RCA-----AVCGWRQMF 156
R+ +DT C C PG + P TL C +C+ A G
Sbjct: 149 RVQKGGTESQDTLCQNCPPGTFS--------PNGTLEECQHQTKCSWLVTKAGAGTSSSH 200
Query: 157 WVQVLLAGLVVPLLLGATL 175
WV L+G +V +++ +T+
Sbjct: 201 WVWWFLSGSLVIVIVCSTV 219
>gi|14192943 multiple EGF-like-domains 10 [Homo sapiens]
Length = 1140
Score = 42.0 bits (97), Expect = 9e-04
Identities = 38/138 (27%), Positives = 51/138 (36%), Gaps = 27/138 (19%)
Query: 25 QGGTRSPRCDCAGDFHKKIGLFCCRGCPAASQVALENCSAVADTRCGCKPGWFVECQVSQ 84
+ G RC+ G+ C + CP + +C ++ C CKPGW
Sbjct: 342 EAGFAGERCEARLCPEGLYGIKCDKRCPCHLENT-HSCHPMSG-ECACKPGW-------- 391
Query: 85 CVSSSPFYCQPCLDCGALHRHTRLLCS-RRDTDCG------TCLPGFYEHGDGCVSCPTS 137
S YC G + +CS + DC TC PGF + D CP
Sbjct: 392 ----SGLYCNETCSPGFYGEACQQICSCQNGADCDSVTGKCTCAPGF-KGIDCSTPCPLG 446
Query: 138 TLG-SCPERCA----AVC 150
T G +C RC AVC
Sbjct: 447 TYGINCSSRCGCKNDAVC 464
Score = 32.0 bits (71), Expect = 0.92
Identities = 39/141 (27%), Positives = 50/141 (35%), Gaps = 38/141 (26%)
Query: 27 GTRSP---RCDCAGDFHKKIGLFCCRGCPAA----SQVALENCSAVA-----DTRCGCKP 74
GT +P C C + IG C + CP A + + NC A D C C P
Sbjct: 679 GTCNPIDRSCQCYPGW---IGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTP 735
Query: 75 GWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCS-RRDTDCG------TCLPGFYEH 127
GW + YC G + L+C + DC TC GF
Sbjct: 736 GW------------TGLYCTQRCPLGFYGKDCALICQCQNGADCDHISGQCTCRTGFM-- 781
Query: 128 GDGC-VSCPTSTLG-SCPERC 146
G C CP+ T G C + C
Sbjct: 782 GRHCEQKCPSGTYGYGCRQIC 802
Score = 30.8 bits (68), Expect = 2.0
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 103 HRHTRLLCSRRDTDCGTCLPGFYEHGDGCV-SCPTSTL-GSC--PERCAAVCGW 152
+RH RR + C PGFYE G+ CV C + G C P C GW
Sbjct: 80 YRHGEKTMYRRKSQC---CPGFYESGEMCVPHCADKCVHGRCIAPNTCQCEPGW 130
>gi|56676397 ankyrin repeat domain 11 [Homo sapiens]
Length = 2663
Score = 40.8 bits (94), Expect = 0.002
Identities = 49/162 (30%), Positives = 63/162 (38%), Gaps = 39/162 (24%)
Query: 163 AGLVVPLLLGATLTYTYRHCWPHKPLVTADEAGMEALTPPPATHLSPLD----SAHTLLA 218
A L+VP L GA P + D+ A+ PP ++L PLD SA
Sbjct: 1896 AELLVPSLEGAL---------PPDLDTSEDQQATAAIIPPEPSYLEPLDEGPFSAVITEE 1946
Query: 219 PPD---SSEKICTVQLVGN------SWTPG----------YPETQEALCPQVTWSWDQLP 259
P + SE+ L+G SW G +PE+ + CP D L
Sbjct: 1947 PVEWAHPSEQALASSLIGGTSENPVSWPVGSDLLLKSPQRFPESPKRFCPA-----DPLH 2001
Query: 260 SRALGPAAAPTLSPESPAGSPAMMLQP--GPQLYDVMDAVPA 299
S A GP +A +P SPA P P L DV D V A
Sbjct: 2002 SAAPGPFSASEAPYPAPPASPAPYALPVAEPGLEDVKDGVDA 2043
>gi|145309304 cadherin EGF LAG seven-pass G-type receptor 3 [Homo
sapiens]
Length = 3312
Score = 40.0 bits (92), Expect = 0.003
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 20/97 (20%)
Query: 53 AASQVALENCSAVADTRCGCKPGW---FVECQVSQCVSSSPFYCQPCLDCGALHRHT--- 106
A++ +A RC C PG+ F E ++ C Y PC + GA R
Sbjct: 1404 ASASTLFRPIQPIAGLRCRCPPGFTGDFCETELDLC------YSNPCRNGGACARREGGY 1457
Query: 107 RLLCSRR--------DTDCGTCLPGFYEHGDGCVSCP 135
+C R DT+ G C+PG +G C P
Sbjct: 1458 TCVCRPRFTGEDCELDTEAGRCVPGVCRNGGTCTDAP 1494
>gi|54607027 integrin beta 4 isoform 2 precursor [Homo sapiens]
Length = 1805
Score = 39.3 bits (90), Expect = 0.006
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 25 QGGTRSPRCDCAGDFHKKIGLFCCRG---CPAASQVALENCSAVADTRCGCKPGW---FV 78
+G + C C G+ + G FC CP S + + +C C+PGW
Sbjct: 515 RGECQCGHCVCYGEGRYE-GQFCEYDNFQCPRTSGFLCNDRGRCSMGQCVCEPGWTGPSC 573
Query: 79 ECQVSQ--CVSSSPFYC--QPCLDCGALHRHTRLLCSRRDTDC----GTCLPGFYEHGDG 130
+C +S C+ S+ C + +CG H H + L + DT C PG E
Sbjct: 574 DCPLSNATCIDSNGGICNGRGHCECGRCHCHQQSLYT--DTICEINYSAIHPGLCEDLRS 631
Query: 131 CVSCPTSTLGSCPERCAAVCGWR 153
CV C G R C ++
Sbjct: 632 CVQCQAWGTGEKKGRTCEECNFK 654
>gi|54607035 integrin beta 4 isoform 1 precursor [Homo sapiens]
Length = 1822
Score = 39.3 bits (90), Expect = 0.006
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 25 QGGTRSPRCDCAGDFHKKIGLFCCRG---CPAASQVALENCSAVADTRCGCKPGW---FV 78
+G + C C G+ + G FC CP S + + +C C+PGW
Sbjct: 515 RGECQCGHCVCYGEGRYE-GQFCEYDNFQCPRTSGFLCNDRGRCSMGQCVCEPGWTGPSC 573
Query: 79 ECQVSQ--CVSSSPFYC--QPCLDCGALHRHTRLLCSRRDTDC----GTCLPGFYEHGDG 130
+C +S C+ S+ C + +CG H H + L + DT C PG E
Sbjct: 574 DCPLSNATCIDSNGGICNGRGHCECGRCHCHQQSLYT--DTICEINYSAIHPGLCEDLRS 631
Query: 131 CVSCPTSTLGSCPERCAAVCGWR 153
CV C G R C ++
Sbjct: 632 CVQCQAWGTGEKKGRTCEECNFK 654
>gi|54607033 integrin beta 4 isoform 3 precursor [Homo sapiens]
Length = 1752
Score = 39.3 bits (90), Expect = 0.006
Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 17/143 (11%)
Query: 25 QGGTRSPRCDCAGDFHKKIGLFCCRG---CPAASQVALENCSAVADTRCGCKPGW---FV 78
+G + C C G+ + G FC CP S + + +C C+PGW
Sbjct: 515 RGECQCGHCVCYGEGRYE-GQFCEYDNFQCPRTSGFLCNDRGRCSMGQCVCEPGWTGPSC 573
Query: 79 ECQVSQ--CVSSSPFYC--QPCLDCGALHRHTRLLCSRRDTDC----GTCLPGFYEHGDG 130
+C +S C+ S+ C + +CG H H + L + DT C PG E
Sbjct: 574 DCPLSNATCIDSNGGICNGRGHCECGRCHCHQQSLYT--DTICEINYSAIHPGLCEDLRS 631
Query: 131 CVSCPTSTLGSCPERCAAVCGWR 153
CV C G R C ++
Sbjct: 632 CVQCQAWGTGEKKGRTCEECNFK 654
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 39.3 bits (90), Expect = 0.006
Identities = 39/154 (25%), Positives = 55/154 (35%), Gaps = 38/154 (24%)
Query: 27 GTRSPRCDCAGD--FHKKIGLFC----CRGCPAASQV---ALENCSAVAD--TRC----- 70
G R RC+ D F +GLF C C + V A+ NC ++ RC
Sbjct: 780 GQRGRRCEVCDDGFFGDPLGLFGHPQPCHQCQCSGNVDPNAVGNCDPLSGHCLRCLHNTT 839
Query: 71 -----GCKPGWFVECQVSQCVSSSPFYCQPC-----------LDCGALHRHTRLLCSRRD 114
C+ G++ + C PC + C + L
Sbjct: 840 GDHCEHCQEGFYGSALAPRPADK----CMPCSCHPQGSVSEQMPCDPVTGQCSCLPHVTA 895
Query: 115 TDCGTCLPGFYE--HGDGCVSCPTSTLGSCPERC 146
DC C PGF++ G GC SC LGS ++C
Sbjct: 896 RDCSRCYPGFFDLQPGRGCRSCKCHPLGSQEDQC 929
Score = 32.7 bits (73), Expect = 0.54
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 93 CQPCLDC---GALHRHT--RLLCSRRDT----DCGTCLPGFYEHGDG----CVSCPTSTL 139
CQPC DC G+LH C+ + T C CLPGF+ +G C P +L
Sbjct: 380 CQPC-DCQSAGSLHLQCDDTGTCACKPTVTGWKCDRCLPGFHSLSEGGCRPCTCNPAGSL 438
Query: 140 GSCPER 145
+C R
Sbjct: 439 DTCDPR 444
Score = 32.3 bits (72), Expect = 0.70
Identities = 33/114 (28%), Positives = 43/114 (37%), Gaps = 19/114 (16%)
Query: 52 PAASQVALENC-SAVADTRC-GCKPGWFVECQVSQCVSSSPFYCQPCL--DCGALHRHTR 107
P AS V + +C + C C PG+ E +S C PC G +T
Sbjct: 665 PPASWVEICSCPTGYTGQFCESCAPGYKREMPQGGPYAS----CVPCTCNQHGTCDPNTG 720
Query: 108 LLCSRRDTD---CGTCLPGFYEH-----GDGCVSCPTSTLGSC---PERCAAVC 150
+ T+ C CLPGFY + D C CP +C PE VC
Sbjct: 721 ICVCSHHTEGPSCERCLPGFYGNPFAGQADDCQPCPCPGQSACTTIPESREVVC 774
>gi|119703755 laminin, beta 2 precursor [Homo sapiens]
Length = 1798
Score = 38.9 bits (89), Expect = 0.008
Identities = 34/131 (25%), Positives = 48/131 (36%), Gaps = 19/131 (14%)
Query: 27 GTRSPRCDCAGDFHKKIGLFCCRGCPAASQVALENCSAVADTRCGCKPGWF-VECQVSQC 85
G RCD + G C+ C + + AL + +C C+ G F + C Q
Sbjct: 807 GVVGRRCDLCAPGYYGFGPTGCQACQCSHEGALSSLCEKTSGQCLCRTGAFGLRCDRCQR 866
Query: 86 VSSSPFYCQPCLDCG---ALHRHTRLLCSRRD----TDCGTCLPGFY-----EHGDGCVS 133
C+PC+ G + HT RD C C+ GF+ +G C
Sbjct: 867 GQWGFPSCRPCVCNGHADECNTHTGACLGCRDHTGGEHCERCIAGFHGDPRLPYGGQCRP 926
Query: 134 CPTSTLGSCPE 144
CP CPE
Sbjct: 927 CP------CPE 931
>gi|4507579 tumor necrosis factor receptor superfamily, member 4
precursor [Homo sapiens]
Length = 277
Score = 38.9 bits (89), Expect = 0.008
Identities = 45/167 (26%), Positives = 59/167 (35%), Gaps = 43/167 (25%)
Query: 13 AALLLVLLGARAQGGTRSPRCDCAGDFHKKIGLFCCRGCPAASQVALENCSAVADTRCG- 71
AALLL+ LG G C GD + CC C + + + CS +T C
Sbjct: 14 AALLLLGLGLSTVTGLH-----CVGDTYPSNDR-CCHECRPGNGM-VSRCSRSQNTVCRP 66
Query: 72 CKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTR--LLCSRRDT-------------- 115
C PG++ + VSS P C+PC C R L + +DT
Sbjct: 67 CGPGFY-----NDVVSSKP--CKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSY 119
Query: 116 ----DCGTCLPGFYEHGD--------GCVSCPTSTLGSCPERCAAVC 150
DC C PG + GD C TL A+C
Sbjct: 120 KPGVDCAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASNSSDAIC 166
>gi|145309326 laminin, gamma 1 precursor [Homo sapiens]
Length = 1609
Score = 38.5 bits (88), Expect = 0.010
Identities = 39/152 (25%), Positives = 54/152 (35%), Gaps = 34/152 (22%)
Query: 27 GTRSPRCDCAGD--FHKKIG----LFCCRGCPAASQV---ALENCSAVADT--RC----- 70
GT RC+ D F +G + CR C + + A+ NC+ + +C
Sbjct: 798 GTTGKRCELCDDGYFGDPLGRNGPVRLCRLCQCSDNIDPNAVGNCNRLTGECLKCIYNTA 857
Query: 71 -----GCKPGWFV---------ECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTD 116
CK G+F +C+ C Q C + L D
Sbjct: 858 GFYCDRCKDGFFGNPLAPNPADKCKACNCNLYGTMKQQS--SCNPVTGQCECLPHVTGQD 915
Query: 117 CGTCLPGFY--EHGDGCVSCPTSTLGSCPERC 146
CG C PGFY + G GC C LGS +C
Sbjct: 916 CGACDPGFYNLQSGQGCERCDCHALGSTNGQC 947
>gi|181336739 multiple EGF-like-domains 11 [Homo sapiens]
Length = 1044
Score = 38.5 bits (88), Expect = 0.010
Identities = 38/135 (28%), Positives = 51/135 (37%), Gaps = 33/135 (24%)
Query: 27 GTRSPRCD---CAGDFHKKIGLFCCRGCPAASQVALENCSAVADTRCGCKPGWFVECQVS 83
G + PRC C H G C CP + + +C V C C+PGW
Sbjct: 338 GYKGPRCQERLCPEGLH---GPGCTLPCPCDADNTI-SCHPVTGA-CTCQPGW------- 385
Query: 84 QCVSSSPFYCQPCLDCGALHRHTRLLCS-RRDTDCG------TCLPGFYEHGDGC-VSCP 135
S +C G +L C+ + DC TC PGF G+ C VSC
Sbjct: 386 -----SGHHCNESCPVGYYGDGCQLPCTCQNGADCHSITGGCTCAPGFM--GEVCAVSCA 438
Query: 136 TSTLGSCPERCAAVC 150
T G C+++C
Sbjct: 439 AGTYG---PNCSSIC 450
Score = 37.0 bits (84), Expect = 0.029
Identities = 36/117 (30%), Positives = 42/117 (35%), Gaps = 16/117 (13%)
Query: 44 GLFCCRGCPAASQVALENCSAVADTRCGCKPGWFVECQVSQCVS-------SSPFYCQPC 96
GL C C A+ A CS + D C C PGW + C S C
Sbjct: 486 GLNCNESCTCANGAA---CSPI-DGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHA 541
Query: 97 LDCGALHRHTRLLCSRRDTDC-GTCLPGFYEHGDGC-VSCPTSTLGSC-PERCAAVC 150
C + H L C TC PG + G C VSC GSC PE + C
Sbjct: 542 DGCDPVTGHCCCLAGWTGIRCDSTCPPGRW--GPNCSVSCSCENGGSCSPEDGSCEC 596
Score = 34.3 bits (77), Expect = 0.19
Identities = 36/119 (30%), Positives = 46/119 (38%), Gaps = 22/119 (18%)
Query: 35 CAGDFHKKIGLFCCRGCPAASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSP--FY 92
CAG + G C + C A+ CS + D C C PGW + C + P F+
Sbjct: 654 CAGGY---FGQDCAQLCSCANN---GTCSPI-DGSCQCFPGWIGK----DCSQACPPGFW 702
Query: 93 CQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVS-CPTSTLGSCPERCAAVC 150
C A H CS D C C PG+ G C CP + G + C VC
Sbjct: 703 GPACFH--ACSCHNGASCSAEDGAC-HCTPGW--TGLFCTQRCPAAFFG---KDCGRVC 753
Score = 33.1 bits (74), Expect = 0.41
Identities = 40/138 (28%), Positives = 52/138 (37%), Gaps = 37/138 (26%)
Query: 24 AQGGTRSP---RCDCAGDFHKKIGLFCCRGCP----------AASQVALENCSAVADTRC 70
A GT SP C C F IG C + CP A S +CSA D C
Sbjct: 670 ANNGTCSPIDGSCQC---FPGWIGKDCSQACPPGFWGPACFHACSCHNGASCSA-EDGAC 725
Query: 71 GCKPGWFVECQVSQCVSSSPFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDG 130
C PGW +C ++ F+ + DCG R+ + C +H G
Sbjct: 726 HCTPGWTGLFCTQRCPAA--FFGK---DCG------RVCQCQNGASC--------DHISG 766
Query: 131 CVSCPTSTLGS-CPERCA 147
+C T G C +RCA
Sbjct: 767 KCTCRTGFTGQHCEQRCA 784
Score = 32.0 bits (71), Expect = 0.92
Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 101 ALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCPTSTL--GSC--PERCAAVCGW 152
A R R + RR C PG+YE GD C+ T G C P+ C GW
Sbjct: 73 AYRRGLRTMYRRRSQ----CCPGYYESGDFCIPLCTEECVHGRCVSPDTCHCEPGW 124
Score = 28.9 bits (63), Expect = 7.8
Identities = 35/131 (26%), Positives = 46/131 (35%), Gaps = 25/131 (19%)
Query: 29 RSPRCDCAGDFHKKIGLFCCRGCPAASQVA-------LEN---CSAVADTRCGCKPGWFV 78
R+ C CA + G++C CP S A +N C + C C PGW
Sbjct: 200 RAGECLCAPGY---TGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITG-ECACPPGWTG 255
Query: 79 ECQVSQCVSSSPFYCQPC-LDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGC-VSCPT 136
C + + Q C DC H C C C G+ GD C CP
Sbjct: 256 AVCAQPCPPGT--FGQNCSQDCPCHHGGQ---CDHVTGQC-HCTAGYM--GDRCQEECPF 307
Query: 137 STLG-SCPERC 146
+ G C + C
Sbjct: 308 GSFGFQCSQHC 318
>gi|219842266 usherin isoform B [Homo sapiens]
Length = 5202
Score = 38.1 bits (87), Expect = 0.013
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 33 CDCAGDFHKKIGLFCCRG---CPAASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSS 89
CD G + L C + CP V C+ R F CQ+ +C S
Sbjct: 849 CDKTGTINGS--LLCNKSTGQCPCKLGVTGLRCNQCEPHRYNLTIDNFQHCQMCECDSLG 906
Query: 90 PFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFY---EHGDGCVSCPTSTLGSCPERC 146
P C + + +R+ C C PGFY + GC+ C T G+ C
Sbjct: 907 TL---PGTICDPISGQCLCVPNRQGRRCNQCQPGFYISPGNATGCLPCSCHTTGAVNHIC 963
Query: 147 AAVCG 151
++ G
Sbjct: 964 NSLTG 968
>gi|219842259 usherin isoform A [Homo sapiens]
Length = 1546
Score = 38.1 bits (87), Expect = 0.013
Identities = 31/125 (24%), Positives = 45/125 (36%), Gaps = 11/125 (8%)
Query: 33 CDCAGDFHKKIGLFCCRG---CPAASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSS 89
CD G + L C + CP V C+ R F CQ+ +C S
Sbjct: 849 CDKTGTINGS--LLCNKSTGQCPCKLGVTGLRCNQCEPHRYNLTIDNFQHCQMCECDSLG 906
Query: 90 PFYCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFY---EHGDGCVSCPTSTLGSCPERC 146
P C + + +R+ C C PGFY + GC+ C T G+ C
Sbjct: 907 TL---PGTICDPISGQCLCVPNRQGRRCNQCQPGFYISPGNATGCLPCSCHTTGAVNHIC 963
Query: 147 AAVCG 151
++ G
Sbjct: 964 NSLTG 968
>gi|7656967 cadherin EGF LAG seven-pass G-type receptor 1 [Homo
sapiens]
Length = 3014
Score = 38.1 bits (87), Expect = 0.013
Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 8/121 (6%)
Query: 32 RCDCAGDFHKKIGLFCCRGCPAASQVALENCSAVADTRCGCKPGWFVECQVSQCVSSSPF 91
+C C +++K + C C + +A +C CKPG + Q ++C +PF
Sbjct: 1984 QCQCKENYYKLLAQDTCLPCDCFPHGSHSRTCDMATGQCACKPG-VIGRQCNRC--DNPF 2040
Query: 92 YCQPCLDCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGCVSCPTSTLGSCPERCAAVCG 151
L C ++ C + + G P V CP ++G+ C+ G
Sbjct: 2041 AEVTTLGCEVIYNG----CPKA-FEAGIWWPQTKFGQPAAVPCPKGSVGNAVRHCSGEKG 2095
Query: 152 W 152
W
Sbjct: 2096 W 2096
>gi|33598931 scavenger receptor class F, member 1 isoform 3
precursor [Homo sapiens]
Length = 569
Score = 37.7 bits (86), Expect = 0.017
Identities = 45/135 (33%), Positives = 53/135 (39%), Gaps = 23/135 (17%)
Query: 32 RCDCA-GDFHKKIGLFC--CRGCPAASQVALENCSAVADTRCGCKPGWF-------VECQ 81
RCD A G H + G + CR P A C A C CKPGW+ C
Sbjct: 140 RCDPATGVCHCEPGWWSSTCRR-PCQCNTAAARCEQ-ATGACVCKPGWWGRRCSFRCNCH 197
Query: 82 VSQC-VSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGC-VSCPT 136
S C S C+P +C R CS +C TC PGF G C + CP
Sbjct: 198 GSPCEQDSGRCACRPGWWGPECQQQCECVRGRCSAASGEC-TCPPGF--RGARCELPCPA 254
Query: 137 STLGSCPERCAAVCG 151
GS +CA CG
Sbjct: 255 ---GSHGVQCAHSCG 266
>gi|33598929 scavenger receptor class F, member 1 isoform 1
precursor [Homo sapiens]
Length = 830
Score = 37.7 bits (86), Expect = 0.017
Identities = 45/135 (33%), Positives = 53/135 (39%), Gaps = 23/135 (17%)
Query: 32 RCDCA-GDFHKKIGLFC--CRGCPAASQVALENCSAVADTRCGCKPGWF-------VECQ 81
RCD A G H + G + CR P A C A C CKPGW+ C
Sbjct: 140 RCDPATGVCHCEPGWWSSTCRR-PCQCNTAAARCEQ-ATGACVCKPGWWGRRCSFRCNCH 197
Query: 82 VSQC-VSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGC-VSCPT 136
S C S C+P +C R CS +C TC PGF G C + CP
Sbjct: 198 GSPCEQDSGRCACRPGWWGPECQQQCECVRGRCSAASGEC-TCPPGF--RGARCELPCPA 254
Query: 137 STLGSCPERCAAVCG 151
GS +CA CG
Sbjct: 255 ---GSHGVQCAHSCG 266
>gi|145309306 scavenger receptor class F, member 1 isoform 5
precursor [Homo sapiens]
Length = 744
Score = 37.7 bits (86), Expect = 0.017
Identities = 45/135 (33%), Positives = 53/135 (39%), Gaps = 23/135 (17%)
Query: 32 RCDCA-GDFHKKIGLFC--CRGCPAASQVALENCSAVADTRCGCKPGWF-------VECQ 81
RCD A G H + G + CR P A C A C CKPGW+ C
Sbjct: 140 RCDPATGVCHCEPGWWSSTCRR-PCQCNTAAARCEQ-ATGACVCKPGWWGRRCSFRCNCH 197
Query: 82 VSQC-VSSSPFYCQPCL---DCGALHRHTRLLCSRRDTDCGTCLPGFYEHGDGC-VSCPT 136
S C S C+P +C R CS +C TC PGF G C + CP
Sbjct: 198 GSPCEQDSGRCACRPGWWGPECQQQCECVRGRCSAASGEC-TCPPGF--RGARCELPCPA 254
Query: 137 STLGSCPERCAAVCG 151
GS +CA CG
Sbjct: 255 ---GSHGVQCAHSCG 266
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,975,570
Number of Sequences: 37866
Number of extensions: 989085
Number of successful extensions: 4542
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 166
Number of HSP's that attempted gapping in prelim test: 4235
Number of HSP's gapped (non-prelim): 466
length of query: 372
length of database: 18,247,518
effective HSP length: 104
effective length of query: 268
effective length of database: 14,309,454
effective search space: 3834933672
effective search space used: 3834933672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.