SNRNP40 1471

Name: SNRNP40	Sequence: fasta or formatted (357aa)		NCBI GI: 115298668
Description: WD repeat domain 57 (U5 snRNP specific)		Referenced in: Capping and Splicing WD Repeat Proteins
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.0 25 2 C cysteine 2.2 8 2 D aspartate 6.2 22 2 E glutamate 3.9 14 1 F phenylalanine 3.1 11 1 G glycine 9.0 32 2 H histidine 2.8 10 1 I isoleucine 4.8 17 3 K lysine 5.3 19 2 L leucine 9.0 32 3 M methionine 2.0 7 1 N asparagine 4.2 15 1 P proline 4.8 17 2 Q glutamine 4.5 16 3 R arginine 5.6 20 2 S serine 8.7 31 2 T threonine 5.6 20 2 V valine 6.4 23 1 W tryptophan 2.0 7 1 Y tyrosine 3.1 11 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 WD repeat domain 57 (U5 snRNP specific) WDR5B 0.208 WD repeat domain 5B WDR5 0.207 WD repeat domain 5 WDR5 0.207 WD repeat domain 5 WDR69 0.165 WD repeat domain 69 ATG16L1 0.155 APG16 autophagy 16-like isoform 1 ATG16L1 0.155 APG16 autophagy 16-like isoform 2 KATNB1 0.145 katanin p80 subunit B 1 WDR51A 0.145 WD repeat domain 51A isoform 2 WDR51A 0.145 WD repeat domain 51A isoform 1 WDR51B 0.141 WD repeat domain 51B WDR51A 0.139 WD repeat domain 51A isoform 3 WDR38 0.138 WD repeat domain 38 ATG16L2 0.137 ATG16 autophagy related 16-like 2 PAFAH1B1 0.132 platelet-activating factor acetylhydrolase, isoform I... WDR88 0.132 PQQ repeat and WD repeat domain containing APAF1 0.127 apoptotic peptidase activating factor 1 isoform d [H... APAF1 0.127 apoptotic peptidase activating factor 1 isoform b [Ho... FBXW7 0.127 F-box and WD repeat domain containing 7 isoform 3 [H... FBXW7 0.127 F-box and WD repeat domain containing 7 isoform 1 [H... FBXW7 0.127 F-box and WD repeat domain containing 7 isoform 2 [H... TAF5L 0.123 PCAF associated factor 65 beta isoform a CDC40 0.117 cell division cycle 40 homolog MORG1 0.117 mitogen-activated protein kinase organizer 1 MORG1 0.117 mitogen-activated protein kinase organizer 1 NLE1 0.115 Notchless gene homolog isoform a TAF5 0.114 TBP-associated factor 5 TBL1XR1 0.113 transducin (beta)-like 1 X-linked receptor 1 PRPF4 0.111 PRP4 pre-mRNA processing factor 4 homolog BRWD1 0.110 bromodomain and WD repeat domain containing 1 isofor... Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.