Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: APAF1 Sequence: fasta or formatted (1194aa) NCBI GI: 4502123
Description:

apoptotic peptidase activating factor 1 isoform b

Referenced in:

BCL2 Pathways, Caspases, and Programmed Cell Death
WD Repeat Proteins

Other entries for this name:
alt prot [1248aa] apoptotic peptidase activating factor 1 isoform c
alt prot [1205aa] apoptotic peptidase activating factor 1 isoform d
alt prot [338aa] apoptotic peptidase activating factor 1 isoform e
alt prot [1237aa] apoptotic peptidase activating factor 1 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         63           2
 C cysteine            3.3         39           3
 D aspartate           7.0         83           2
 E glutamate           6.4         76           3
 F phenylalanine       4.0         48           2
 G glycine             4.9         59           2
 H histidine           3.6         43           2
 I isoleucine          5.2         62           2
 K lysine              7.4         88           2
 L leucine            11.2        134           3
 M methionine          2.2         26           1
 N asparagine          4.3         51           2
 P proline             2.4         29           1
 Q glutamine           4.6         55           3
 R arginine            3.9         47           2
 S serine              8.0         95           4
 T threonine           4.9         59           2
 V valine              7.0         83           2
 W tryptophan          2.2         26           2
 Y tyrosine            2.3         28           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   apoptotic peptidase activating factor 1 isoform b [Ho... 
APAF1                 0.997   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.991   apoptotic peptidase activating factor 1 isoform a [Ho...
APAF1                 0.988   apoptotic peptidase activating factor 1 isoform c [H...
APAF1                 0.240   apoptotic peptidase activating factor 1 isoform e [H...
WDR69                 0.038   WD repeat domain 69 
WDR5B                 0.038   WD repeat domain 5B 
SNRNP40               0.037   WD repeat domain 57 (U5 snRNP specific) 
SPAG16                0.037   sperm associated antigen 16 isoform 1 
PAFAH1B1              0.037   platelet-activating factor acetylhydrolase, isoform I...
WDR5                  0.037   WD repeat domain 5 
WDR5                  0.037   WD repeat domain 5 
WDR51B                0.033   WD repeat domain 51B 
TEP1                  0.033   telomerase-associated protein 1 
WDR38                 0.033   WD repeat domain 38 
TAF5L                 0.032   PCAF associated factor 65 beta isoform a 
NLE1                  0.032   Notchless gene homolog isoform a 
GNB2L1                0.031   guanine nucleotide binding protein (G protein), beta ...
WDR51A                0.031   WD repeat domain 51A isoform 2 
WDR51A                0.031   WD repeat domain 51A isoform 1 
WDR88                 0.031   PQQ repeat and WD repeat domain containing 
STRAP                 0.030   serine/threonine kinase receptor associated protein...
FBXW7                 0.029   F-box and WD repeat domain containing 7 isoform 3 [H...
FBXW7                 0.029   F-box and WD repeat domain containing 7 isoform 1 [H...
FBXW7                 0.029   F-box and WD repeat domain containing 7 isoform 2 [H...
WDR51A                0.027   WD repeat domain 51A isoform 3 
WDSUB1                0.027   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.027   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.027   WD repeat, sterile alpha motif and U-box domain con...
TAF5                  0.027   TBP-associated factor 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press