ATG16L1 2738

Name: ATG16L1	Sequence: fasta or formatted (607aa)		NCBI GI: 124256480
Description: APG16 autophagy 16-like isoform 1		Referenced in: Additional Membrane Functions Small RNAs in RNA Processing WD Repeat Proteins
Other entries for this name: alt prot [588aa] APG16 autophagy 16-like isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.7 47 2 C cysteine 2.0 12 1 D aspartate 6.9 42 3 E glutamate 7.9 48 2 F phenylalanine 3.0 18 1 G glycine 5.4 33 2 H histidine 2.6 16 1 I isoleucine 4.6 28 2 K lysine 6.4 39 2 L leucine 10.2 62 2 M methionine 1.5 9 1 N asparagine 3.6 22 2 P proline 2.6 16 1 Q glutamine 4.8 29 1 R arginine 7.2 44 3 S serine 8.9 54 3 T threonine 5.3 32 2 V valine 6.3 38 2 W tryptophan 1.8 11 1 Y tyrosine 1.2 7 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 APG16 autophagy 16-like isoform 1 ATG16L1 0.959 APG16 autophagy 16-like isoform 2 ATG16L2 0.329 ATG16 autophagy related 16-like 2 SNRNP40 0.093 WD repeat domain 57 (U5 snRNP specific) WDR51A 0.077 WD repeat domain 51A isoform 3 WDR51A 0.077 WD repeat domain 51A isoform 2 WDR51A 0.077 WD repeat domain 51A isoform 1 WDR51B 0.077 WD repeat domain 51B WDR5B 0.076 WD repeat domain 5B WDR5 0.073 WD repeat domain 5 WDR5 0.073 WD repeat domain 5 WDR69 0.069 WD repeat domain 69 TBL3 0.058 transducin beta-like 3 KATNB1 0.055 katanin p80 subunit B 1 PAFAH1B1 0.054 platelet-activating factor acetylhydrolase, isoform I... SPAG16 0.054 sperm associated antigen 16 isoform 1 WDR38 0.053 WD repeat domain 38 SMU1 0.052 smu-1 suppressor of mec-8 and unc-52 homolog TBL1X 0.052 transducin beta-like 1X isoform b TBL1X 0.052 transducin beta-like 1X isoform b TBL1X 0.052 transducin beta-like 1X isoform a TBL1X 0.052 transducin beta-like 1X isoform a WDR47 0.052 WD repeat domain 47 isoform 3 WDR47 0.052 WD repeat domain 47 isoform 1 WDR47 0.052 WD repeat domain 47 isoform 2 FBXW7 0.050 F-box and WD repeat domain containing 7 isoform 3 [H... FBXW7 0.050 F-box and WD repeat domain containing 7 isoform 1 [H... FBXW7 0.050 F-box and WD repeat domain containing 7 isoform 2 [H... TBL1XR1 0.049 transducin (beta)-like 1 X-linked receptor 1 TBL1Y 0.048 transducin beta-like 1Y Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.